View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9368_low_1 (Length: 781)
Name: NF9368_low_1
Description: NF9368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9368_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 697; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 19 - 768
Target Start/End: Original strand, 31398611 - 31399361
Alignment:
| Q |
19 |
ggtgtaccggttcaagatccattggttttgttagaaaataatccagaaaatggagtgattgtacctcctcaagaaataggtgctccaagccctaataata |
118 |
Q |
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| T |
31398611 |
ggtgtaccggttcaagatccattggttttgttagaaaataatccagaaaatggagtgattgtacctcctcaagaagtaggtgctccaagccctaataata |
31398710 |
T |
|
| Q |
119 |
cagcaaagaaggtgacagacaaaaaagtaattcaatggatgttaactctacatcaaataggtttgtgaaatatttttaggttctcaatgcactataatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31398711 |
cagcaaagaaggtgacagacaaaaaagtaattcaatggatgttaactctacatcaaataggtttgtgaaatatttttaggttctcaatgcactataatat |
31398810 |
T |
|
| Q |
219 |
gtatactattggatgtttttcaaatgaagaaatgtaaaattctatcatcataaaataactcacatggtgaattatcttactttctttttcttatataaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31398811 |
gtatactattggatgtttttcaaatgaagaaatgtaaaattctatcatcataaaataactcacatggtgaattatcttactttctttttcttatataaac |
31398910 |
T |
|
| Q |
319 |
acatttcaggtcttgacgtgattcgtaccgataggacactggttttttatgagaagaaagagaatttgtcaaaattatgggatattcttgctgtttatgc |
418 |
Q |
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| T |
31398911 |
acatttcaggtcttgacgtgattcgtaccgataggacactggttttttatgagaagaaagagaatttgtcaaaattatgggatattcttgctgtttatgc |
31399010 |
T |
|
| Q |
419 |
taggatagataatgatgttggctatggtcaaggttagtcattagatatgtgattcatttgaatg-taannnnnnnnnngttgcctcttttcgacattgac |
517 |
Q |
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| T |
31399011 |
taggatagataatgatgttggctatggtcaaggttagtcattagatatgtgattcatttgaatgttaattttttttttgttgcctcttttcgacattgac |
31399110 |
T |
|
| Q |
518 |
taatacttggtcattgacttaaaatagcagaaaatgtatatagatgtagtgataattgtggttgttgatatcttttaaaccctgatatactgcagttgca |
617 |
Q |
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| T |
31399111 |
taatacttggtcattgacttaaaatagcagaaaatgtatgtagatgtaatgataattgtggttgttgatatcttttaaaccctgatatactgcagttgca |
31399210 |
T |
|
| Q |
618 |
taccgcaatttaaaacattgacttattcatagattaattttaattatgatccacttgtaatcttatgagaaactaaatgtaaccagaatttgaaactaat |
717 |
Q |
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| T |
31399211 |
taccgcaatttaaaaccttgacttattcatagattaattttaattatgatccacttgtaatcttatgagaaactaaatgtaaccagaatttgaaactaat |
31399310 |
T |
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| Q |
718 |
gtaaatttctggttatcattttacaatttgcaggaatgagtgacctatgct |
768 |
Q |
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| T |
31399311 |
gtaaatttctggttatcattttacaatttgcaggaatgagtgacctatgct |
31399361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 603 - 635
Target Start/End: Complemental strand, 24562981 - 24562949
Alignment:
| Q |
603 |
tatactgcagttgcataccgcaatttaaaacat |
635 |
Q |
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| T |
24562981 |
tatactgcagttgcataccgcaatttaaaacat |
24562949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 322 - 453
Target Start/End: Complemental strand, 34941625 - 34941494
Alignment:
| Q |
322 |
tttcaggtcttgacgtgattcgtaccgataggacactggttttttatgagaagaaagagaatttgtcaaaattatgggatattcttgctgtttatgctag |
421 |
Q |
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||||||||||||||||| |||| || ||||| ||| |||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||| | |
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| T |
34941625 |
tttcaggtcttgacgtggttcgcactgatagaacattggttttttatgagaaacaagaaaacttgtcaaaattatgggatattcttgcggtttatgcttg |
34941526 |
T |
|
| Q |
422 |
gatagataatgatgttggctatggtcaaggtt |
453 |
Q |
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| T |
34941525 |
gatagataaagaagttggatacggtcaaggtt |
34941494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 34941775 - 34941718
Alignment:
| Q |
130 |
gtgacagacaaaaaagtaattcaatggatgttaactctacatcaaataggtttgtgaa |
187 |
Q |
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| T |
34941775 |
gtgacagacaagaaactaatccagtggatgttaactctccatcaaataggtttgtgaa |
34941718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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