View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9368_low_10 (Length: 220)
Name: NF9368_low_10
Description: NF9368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9368_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 33926303 - 33926161
Alignment:
| Q |
63 |
cgccatggatgatgaagtgcgcaagatcttcagcaagttcgacaaaaacggcgatggaaaaatctcacgctcagaactcaaagaaatgcttttaacactc |
162 |
Q |
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| T |
33926303 |
cgccatggatgatgaagtgcgcaagatcttcagcaagttcgacaaaaacggcgatggaaaaatctcacgctcagaactcaaagaaatgcttttaacgctc |
33926204 |
T |
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| Q |
163 |
ggatcagaaactacatcagaagaagtgaaacgcatgatggaag |
205 |
Q |
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| T |
33926203 |
ggatcagaaactacatcagaagaagtgaaacgcatgatggaag |
33926161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 1892863 - 1892738
Alignment:
| Q |
79 |
gtgcgcaagatcttcagcaagttcgacaaaaacggcgatggaaaaatctcacgctcagaactcaaagaaatgcttttaacactcggatcagaaactacat |
178 |
Q |
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| T |
1892863 |
gtgcgtaacatcttcaacaagttcgacaagaacgacgacggaaagatctctgtctcagagctggaagaaatgctttcaacgcttggatccaaaacgacat |
1892764 |
T |
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| Q |
179 |
cagaagaagtgaaacgcatgatggaa |
204 |
Q |
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| T |
1892763 |
ctaatgaagtaaaacgcatgatggaa |
1892738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 17751682 - 17751624
Alignment:
| Q |
63 |
cgccatggatgatgaagtgcgcaagatcttcagcaagttcgacaaaaacggcgatggaa |
121 |
Q |
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| T |
17751682 |
cgccatggatgacgaggttcgcaaaatcttcagcaagttcgacaagaatggtgatggaa |
17751624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 30196715 - 30196659
Alignment:
| Q |
76 |
gaagtgcgcaagatcttcagcaagttcgacaaaaacggcgatggaaaaatctcacgc |
132 |
Q |
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||||| ||||||||||| | ||| ||||||||||||||||| || || ||||||||| |
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| T |
30196715 |
gaagttcgcaagatctttaacaaattcgacaaaaacggcgacgggaagatctcacgc |
30196659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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