View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9368_low_2 (Length: 508)
Name: NF9368_low_2
Description: NF9368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9368_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 34945001 - 34945477
Alignment:
| Q |
19 |
ctcatgaaattgaattcgactttattgaataaaaatatgttttagcaaatatcaatttgttacatcaaagtaacttgtgcaaggcactactaaactattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945001 |
ctcatgaaattgaattcgactttattgaataaaaatatgttttagcaaatatcaatttgttacatcaaagtaacttgtgcaaggcactactaaactattt |
34945100 |
T |
|
| Q |
119 |
gcattttattttgagaaattgatgtcacacaaattacattcttattcttgttattacactggttaggggccacctatatgtcacttgagttaaatataag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945101 |
gcattttattttgagaaattgatgtcacacaaattacattcttattcttgttattacactggttaggggccacctatatgtcacttgagttaaatataag |
34945200 |
T |
|
| Q |
219 |
tggctcctttattacagtccccttataaatatatttgaagcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945201 |
tggctcctttattacagtccccttataaatatatttgaagcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagac |
34945300 |
T |
|
| Q |
319 |
ctaaaaccaaatgtgaggaagatcttgtaatatttgaagccagcttgtaagaaaagttgtttccattccttttcatttctctcttttccattgaaacagg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34945301 |
ctaaaaccaaatgtgaggaagatcttgtaatatttgaagccagcttgtaagaaaagttgtttccattctttttcatttctctcttttccattgaaacagg |
34945400 |
T |
|
| Q |
419 |
tcatcataaccacatcaagcaaaagctttacttctgtcatttcatgttcatcttgtttttcatttatcactgcatct |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945401 |
tcatcataaccacatcaagcaaaagctttacttctgtcatttcatgttcatcttgtttttcatttatcactgcatct |
34945477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 39 - 488
Target Start/End: Original strand, 34949409 - 34949870
Alignment:
| Q |
39 |
tttattgaataaaa-atatgttttagcaaatatcaatttgttacatcaaa-------gtaacttgtgcaaggcactactaaactatttgcattttatttt |
130 |
Q |
| |
|
|||||||||||||| || | ||||| |||||||||| ||| ||||||||| |||| |||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
34949409 |
tttattgaataaaacatgttttttaccaaatatcaaattgatacatcaaattctgatgtaagttgtgcaaggcactacaaaactatttgcatatt-tttt |
34949507 |
T |
|
| Q |
131 |
gagaaattgatgtcacacaaattacattcttattcttg----ttattacactggttaggggccacctatatgtcacttgagttaaatataagtggctcct |
226 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
34949508 |
gagaaattgatatcacacaaattacattcttattcttgcttcttattacactggttagaggccatctatatatcactagagttaaatatgagtggctcct |
34949607 |
T |
|
| Q |
227 |
ttattacagtccccttataaatatatttgaa-gcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagacctaaaac |
325 |
Q |
| |
|
|||||||| ||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34949608 |
ttattacaactataatataaatttataacaaagcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagacctaaaac |
34949707 |
T |
|
| Q |
326 |
caaatgtgaggaagatcttgtaatatttgaagccagcttgtaagaaaagttgtttccattccttttcatttctctcttttccattgaaacaggtcatcat |
425 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
34949708 |
caaacgtggggaagatcttgtagtatttgaagccagcttgtaagaaaagttgtttccattccttttcatttctctcttttccattgagactggtcatcat |
34949807 |
T |
|
| Q |
426 |
aaccacatcaagcaaaagctttacttctgtcatttcatgttcatcttgtttttcatttatcac |
488 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34949808 |
aaccacatcaagtaaaagctttacttctgtcatttcatgttcatcttgtttttcatttatcac |
34949870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 488
Target Start/End: Original strand, 8064294 - 8064334
Alignment:
| Q |
448 |
acttctgtcatttcatgttcatcttgtttttcatttatcac |
488 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
8064294 |
acttctgttatttcatgctcatcttgcttttcatttatcac |
8064334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University