View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9368_low_3 (Length: 324)
Name: NF9368_low_3
Description: NF9368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9368_low_3 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 101491 - 101197
Alignment:
| Q |
16 |
acttctctcatgctctaccatgccattaccctgccatggggatagtgactagaatctgtacttgagacatatatataagaattgaattgaaaggatacat |
115 |
Q |
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| T |
101491 |
acttctctcatgctctaccatgccattaccctgccatggggatagtgactagaatctgtacttgagacatatatataagaattgaattgaaaggatacat |
101392 |
T |
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| Q |
116 |
gcatggtatggttacctattattatttgataagtcctattcacttgaggtgatagtgttggatgaataaaacaaaaaggagtatgaaatgattgattatt |
215 |
Q |
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| T |
101391 |
gcatggtatggttacctattattatttgataagtcctattcacttgaggtgatagtgttggatgaataaaacaaaaaggagtatgaaatgattgattatt |
101292 |
T |
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| Q |
216 |
gtcgagggtcattatctttagaccaaatgaccaattataaaaacatgtttagtaagttgataaccttagattggaatagacaatacatgtgatgt |
310 |
Q |
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| T |
101291 |
gtcgagggtcattatctttagaccaaatgaccaattataaaaacatgtttagtaagttgataaccttagattggaatagacaatacatgtgatgt |
101197 |
T |
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Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 41121658 - 41121952
Alignment:
| Q |
16 |
acttctctcatgctctaccatgccattaccctgccatggggatagtgactagaatctgtacttgagacatatatataagaattgaattgaaaggatacat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41121658 |
acttctctcatgctctaccatgccattaccctgccatggggatagtgactagaatctgtacttgagacatatatataagaattgaattgaaaggatacat |
41121757 |
T |
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| Q |
116 |
gcatggtatggttacctattattatttgataagtcctattcacttgaggtgatagtgttggatgaataaaacaaaaaggagtatgaaatgattgattatt |
215 |
Q |
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| T |
41121758 |
gcatggtatggttacctattattatttgataagtcctattcacttgaggtgatagtgttggatgaataaaacaaaaaggagtatgaaatgattgattatt |
41121857 |
T |
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| Q |
216 |
gtcgagggtcattatctttagaccaaatgaccaattataaaaacatgtttagtaagttgataaccttagattggaatagacaatacatgtgatgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41121858 |
gtcgagggtcattatctttagaccaaatgaccaattataaaaacatgtttagtaagttgataaccttagattggaatagacaatacatgtgatgt |
41121952 |
T |
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