View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9368_low_4 (Length: 298)
Name: NF9368_low_4
Description: NF9368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9368_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 28209614 - 28209344
Alignment:
| Q |
17 |
cacattacgcaggagaggatatagttcttaaactccagcctaatgaggcatggaaaaaagtttttgggccaacttttgtctatcttaacaacttgttgga |
116 |
Q |
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| T |
28209614 |
cacattacgcaggagaggatatagttcttaaactccagcctaatgagccatggaaaaaagtttttgggccaacttttgtctatcttaacaacttgttgga |
28209515 |
T |
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| Q |
117 |
tcatgatgaggacccactagctcaactctgggaggacgccaaatttcaggttcagaattaaaaaatctagaaaatttagtttaatttaagaacataaaca |
216 |
Q |
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| T |
28209514 |
tcatgatgaggacccactagctcaactctgggaggacgccaaatttcaggttcagaatta-aaaatctagaaaatttagtttaatttaagaacataaaca |
28209416 |
T |
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| Q |
217 |
ctaattaaatactaattaagaccacttaaaatggcttctagatgaacaaagaagtacaaagttggccctatg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209415 |
ctaattaaatactaattaagaccacttaaaatggcttctagatgaacaaagaagtacaaagttggccctatg |
28209344 |
T |
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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 52629283 - 52629364
Alignment:
| Q |
207 |
aacataaacactaattaaatactaattaagaccacttaaaatggcttctagatgaacaaagaagtacaaagttggccctatg |
288 |
Q |
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|||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
52629283 |
aacataaacactaattaagtactaactaagaccatttaaaatggcttctagatgaacatggaagtgcaaagtaggccctatg |
52629364 |
T |
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