View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9368_low_6 (Length: 286)
Name: NF9368_low_6
Description: NF9368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9368_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 24398481 - 24398247
Alignment:
| Q |
39 |
ctttcttttgtggctgaagtgttcaattgatttcttcagtatagggatttataggaaaaaatcatctactacctaacaaagggaaaggagtatttatgta |
138 |
Q |
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| T |
24398481 |
ctttcttttgtggctgaagtgttcaattgatttcttcagtgtagggatttataggaaaaaatcatctactacctaccaaaggaaaaggagtatttatgta |
24398382 |
T |
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| Q |
139 |
tactatgtaaggtaggttgtatttatgtaacaaaatgtatttgtcgtaaacttagctcagttgataatgatattgtataatatatataggatcaatgttt |
238 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
24398381 |
tactatgtaaggtaggttgtatttatgtaataaaatgtatttgtcgtaagcttagctcagttgataacgatgttgtataatatatataggatcaatgttt |
24398282 |
T |
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| Q |
239 |
aaaccctagacatcatacttattcatcttaaagta |
273 |
Q |
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| T |
24398281 |
aaaccctggacattatacttattcatcttaaagta |
24398247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 11759024 - 11759064
Alignment:
| Q |
183 |
cgtaaacttagctcagttgataatgatattgtataatatat |
223 |
Q |
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| T |
11759024 |
cgtaaacttagctcagttgataaggataatgtataatatat |
11759064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 24607881 - 24607922
Alignment:
| Q |
182 |
tcgtaaacttagctcagttgataatgatattgtataatatat |
223 |
Q |
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| T |
24607881 |
tcgtaaacctagctcaattgataaagatattgtataatatat |
24607922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 43108106 - 43108066
Alignment:
| Q |
182 |
tcgtaaacttagctcagttgataatgatattgtataatata |
222 |
Q |
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||||||||||| |||||||||||| |||| ||||||||||| |
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| T |
43108106 |
tcgtaaacttaactcagttgataaggataatgtataatata |
43108066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 12619343 - 12619383
Alignment:
| Q |
183 |
cgtaaacttagctcagttgataatgatattgtataatatat |
223 |
Q |
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| T |
12619343 |
cgtaagcttagctcagttgataatgataatgcataatatat |
12619383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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