View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9368_low_7 (Length: 261)

Name: NF9368_low_7
Description: NF9368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9368_low_7
NF9368_low_7
[»] chr7 (5 HSPs)
chr7 (1-256)||(12537985-12538240)
chr7 (1-256)||(15834497-15834752)
chr7 (41-256)||(11527695-11527910)
chr7 (1-256)||(23532019-23532274)
chr7 (59-256)||(15931849-15932046)
[»] chr8 (3 HSPs)
chr8 (1-256)||(25502946-25503201)
chr8 (1-256)||(21408730-21408986)
chr8 (1-256)||(21803222-21803478)
[»] chr1 (1 HSPs)
chr1 (1-256)||(554927-555182)
[»] chr6 (1 HSPs)
chr6 (1-256)||(11695108-11695363)
[»] chr2 (1 HSPs)
chr2 (1-256)||(29603294-29603543)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-256)||(56660-56915)
[»] scaffold0443 (1 HSPs)
scaffold0443 (1-235)||(6128-6358)
[»] chr3 (4 HSPs)
chr3 (1-256)||(14565775-14566030)
chr3 (1-237)||(16083059-16083295)
chr3 (59-256)||(102969-103166)
chr3 (1-237)||(15418115-15418351)
[»] scaffold0071 (1 HSPs)
scaffold0071 (1-237)||(43887-44123)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 12537985 - 12538240
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |||    
T  12537985 gttgaagacggttacatgctcagaaggatcgcctcttccatcgaaagatggtagatgaggcggtttaaagttatcgggaaccggagcgttccatatttca 12538084  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    || |||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12538085 gttgaaaacggttgaggctctggctcatccaaatcgccatgatgagagtcggccctttcttgctgttgcacttgttggatagtttcgactgaggcgagaa 12538184  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    |||| |||||||| ||||||||||||| ||| |||||||||||||| | |||||||    
T  12538185 gtgcctcattctgctccaacaattgggtgatttgactcctcattgtttgtgcttct 12538240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 15834497 - 15834752
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| ||||| |||||||| ||||||||||| ||||||||||| |||    
T  15834497 gttgaagacggttacatgctcagaaggatcgcctcttccatcgaaagatggtagatgaggcggtttaaagttgtcgggaaccggtgcgttccatatttca 15834596  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    || |||||||| ||||||||||| ||||||||||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||||||||    
T  15834597 gttgaaaacggttgaggctctggctcatccaaatcgccatgatgagagtcggtcttttcttgctgttgcacttgttggatagtttcgactgaggcgagaa 15834696  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  15834697 gtgcctcattctgctccaacaattgggcgatttgactcctcattgtctgtgcttct 15834752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 256
Target Start/End: Complemental strand, 11527910 - 11527695
Alignment:
Q  41 tcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccat 140  Q
    |||||||||||||  || ||||| || |||||||| ||||| |||||||||||||| ||||| || |||||||| || |||||||||||||  ||||| |    
T  11527910 tcgaaagttggtaagtgcggcggtttgaagttatctggaacaggagcgttccatatttcagttgagaacggctggggttctggttcatccatctcgccgt 11527811  T
Q  141 gatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcct 240  Q
    ||||||| || ||| | ||||| ||||||  ||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||||| ||||||||||||||| |    
T  11527810 gatgagagtccgccttctcttgttgctgctgttgctggatggtttccactgaagcgagtagggcttcgttcttttccaacaactgggcgatctgactctt 11527711  T
Q  241 cattgtctctgcttct 256  Q
    ||| || |||||||||    
T  11527710 catcgtttctgcttct 11527695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 23532019 - 23532274
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||| ||||| ||||||||||| | ||| ||||| || |||||||||||||  || ||| | || |||||||| |||||||||||||||||||| | |    
T  23532019 gttgaaaacggttacatgctcagatgcatcacccctcccgtcgaaagttggtaagtgcggcagtttgaagttatctggaaccggagcgttccatatttta 23532118  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    || || |||||||| || |||||||||||||  ||||| |||||||| || ||| | ||||| ||||||  ||| ||||| ||||| || || ||||| |    
T  23532119 gttgagaacggctggggttctggttcatccagctcgccgtgatgagagtccgccttctcttgttgctgctgttgctggatggtttccaccgaagcgagta 23532218  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    | ||||  |||||||||| ||| ||||||||||||||| |||| || |||||||||    
T  23532219 gggctttgttctgttccatcaactgggcgatctgactcttcatcgtttctgcttct 23532274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 256
Target Start/End: Original strand, 15931849 - 15932046
Alignment:
Q  59 ggcggcttaaagttatcgggaaccggagcgttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagcccttt 158  Q
    ||||| || |||||||| ||||||||||||||||| || ||||  || ||||| || || ||||| ||||||| |||||| |||||||| || ||| | |    
T  15931849 ggcggtttgaagttatctggaaccggagcgttccagatttcagatgagaacggttggggttctggctcatccagatcgccgtgatgagagtccgccttct 15931948  T
Q  159 cttgctgctgcacttgttggatagtttcgactgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    | ||  ||||   ||| ||||| ||||| || |||||||| || ||||| |||||||||||||| ||||||||||||||| |||  || |||||||||    
T  15931949 cctgtagctgttgttgctggatggtttccaccgaggcgagtagagcttcgttctgttccaacaactgggcgatctgactcttcaccgtttctgcttct 15932046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 25503201 - 25502946
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||||||| |||    
T  25503201 gttgaagacggttacatgctcagaaggatcgcctcttccatcgaaagatggtaggtgaggcggtttaaagttatcgggaaccggagcgttccatatttca 25503102  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
     | |||||||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25503101 attgaaaacggttgaggctctggctcatccaaatcgccgtgatgagagtcggccctttcttgctgttgcacttgttggatagtttcgactgaggcgagaa 25503002  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||| | |||||||    
T  25503001 gtgcctcattctgctccaacaattgggcgatttgactcctcattgtttgtgcttct 25502946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 21408986 - 21408730
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagtt-ggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtc 99  Q
    |||||||||||| ||||||||||| ||||| |||||| | | ||||||| ||||  || |||||||| |||||||| ||||||||||||||| |||| ||    
T  21408986 gttgaagacggttacatgctcagaaggatcacccctttcgttgaaagtttggtaagtgcggcggcttgaagttatccggaaccggagcgttctatatttc 21408887  T
Q  100 agtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgaga 199  Q
     || || ||||||||||| || ||||||||||  ||||| |||||||| |  ||| | ||||| |||||||  || ||||||||||| || || |||||     
T  21408886 ggttgagaacggctgaggttcgggttcatccagctcgccgtgatgagagttcgccttctcttgttgctgcagctgctggatagtttccaccgaagcgagt 21408787  T
Q  200 agtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    || ||||| |||||||||||||| ||||||||||||||| |||| || | |||||||    
T  21408786 agggcttcgttctgttccaacaactgggcgatctgactcttcatcgtttgtgcttct 21408730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 21803478 - 21803222
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagtt-ggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtc 99  Q
    |||||||||||| ||||||||||| ||||| |||||| | | ||||||| ||||  || |||||||| |||||||| ||||||||||||||| |||| ||    
T  21803478 gttgaagacggttacatgctcagaaggatcacccctttcgttgaaagtttggtaagtgcggcggcttgaagttatccggaaccggagcgttctatatttc 21803379  T
Q  100 agtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgaga 199  Q
     || || ||||||||||| || ||||||||||  ||||| |||||||| |  ||| | ||||| |||||||  || ||||||||||| || || |||||     
T  21803378 ggttgagaacggctgaggttcgggttcatccagctcgccgtgatgagagttcgccttctcttgttgctgcagctgctggatagtttccaccgaagcgagt 21803279  T
Q  200 agtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    || ||||| |||||||||||||| ||||||||||||||| |||| || | |||||||    
T  21803278 agggcttcgttctgttccaacaactgggcgatctgactcttcatcgtttgtgcttct 21803222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 554927 - 555182
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||| |||||||| || || ||||  |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||     
T  554927 gttgaagacggttacatgctctgaagggtcgcttcttccatcgaaagttggtagttggggcggtttaaagttatcgggaaccggagcgttccatatttcg 555026  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    || |||||||| ||||| ||||| ||||||||||||||||||||||| || | | |||||||||| ||||| ||||||||||||||||||||||||||||    
T  555027 gttgaaaacggttgaggttctggctcatccaaatcgccatgatgagagtcggtcttttcttgctgttgcacctgttggatagtttcgactgaggcgagaa 555126  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    |||| |||||||| ||||||| ||||||||| |||||||||||||||| |||||||    
T  555127 gtgcctcattctgctccaacagttgggcgatttgactcctcattgtctatgcttct 555182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 11695363 - 11695108
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||| || ||     
T  11695363 gttgaagacggtcacatgctcagacggaccgcccctcccatcgaaagttggtaaatggggcagcttgaagttatcaggaaccggagcgttccaaatttcg 11695264  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    ||||| ||||| |||||||||||||||| ||||||||| |||||||| || |  |||||||||| ||||||||| ||||||||||| |||||||||||||    
T  11695263 gtcgagaacggttgaggctctggttcattcaaatcgccgtgatgagagtccgttctttcttgctactgcacttgctggatagtttctactgaggcgagaa 11695164  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    |||| ||||||||||||| ||||||||| || |||||| |||| || | |||||||    
T  11695163 gtgcctcattctgttccagcaattgggctatttgactcttcatcgtttgtgcttct 11695108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 29603294 - 29603543
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||| ||||||||||| |||||||||||||||| |||||||||||  || |||||||| |||||||| |||||||||||||||||||| |||    
T  29603294 gttgaagacggttacatgctcagaaggatcgccccttccattgaaagttggtaagtgcggcggcttgaagttatctggaaccggagcgttccatatttca 29603393  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    || ||||||||||| ||||||||||||||||  ||||| |||||||| || ||| | || |||||||||      |||||||| || ||||| ||||| |    
T  29603394 gttgaaaacggctggggctctggttcatccagctcgccgtgatgagagtccgccttctcctgctgctgc------tggatagtctccactgaagcgagta 29603487  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    | ||||| |||||||||||||| |||||||||||||||||||| || | |||||||    
T  29603488 gagcttcgttctgttccaacaactgggcgatctgactcctcatcgtttgtgcttct 29603543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 56915 - 56660
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||| ||||||||||| | |||||||||||||| ||| |||||||  || ||| |||| ||||||||  ||||||||||||||||||| ||     
T  56915 gttgaagacggttacatgctcagacgaatcgccccttccattgaaggttggtaagtgcggcagcttgaagttatcttgaaccggagcgttccatatttcg 56816  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    || || ||||| || ||||||||||| ||||  |||||||||||||| || ||| | || |||||||||  ||| |||||||| || ||||| ||||| |    
T  56815 gttgagaacggttggggctctggttcctccagctcgccatgatgagagtccgccttctcctgctgctgctattgctggatagtctccactgaagcgagta 56716  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    | ||||| |||||||||||||| |||||||||||||||||||| || | |||||||    
T  56715 gagcttcgttctgttccaacaactgggcgatctgactcctcatcgtttgtgcttct 56660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6128 - 6358
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||| |  || ||||| || |||||||| || || |||||||||||||| ||     
T  6128 gttgaagacggttacatgctcagaaggatcgccccttccatcgaaagttggcaagtgcggcggtttgaagttatccgggactggagcgttccatatttcg 6227  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    ||  ||||| | || ||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||| | ||| |||||||| || || || |||||||    
T  6228 gtttaaaacagttggggctctggttcatccaactcgccgtgatgagaatccgccttttcttgctgctgtagttgctggatagtctccaccgaagcgagaa 6327  T
Q  201 gtgcttcattctgttccaacaattgggcgatctga 235  Q
        ||| |||||||||||||| ||||||||||||    
T  6328 ----ttcgttctgttccaacaactgggcgatctga 6358  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 14565775 - 14566030
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||| ||||| ||||| ||||| ||||| || || || |||||||| || |  || ||||||||||||||||| ||||| |||||||||||||| |||    
T  14565775 gttgaaaacggttacatgttcagatggatctcctctcccgtcgaaagtgggcaagtgtggcggcttaaagttatccggaacgggagcgttccatatctca 14565874  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    || || |||||||| || |||||| ||||||  ||||| |||||| | || ||| ||||||| ||||||  ||| || || ||||| ||||| ||||| |    
T  14565875 gttgagaacggctggggttctggtacatccatctcgccgtgatgacagtccgccttttcttgttgctgctgttgctgaatggtttccactgaagcgagta 14565974  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    | ||||| ||||| ||||| |||||||||||||||||| |||| || || ||||||    
T  14565975 gggcttcgttctgctccaataattgggcgatctgactcttcatcgtttcagcttct 14566030  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16083295 - 16083059
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||| || |||||||| ||||| |||||||||||||||| ||| || || || || ||||| || ||||| || ||||| |||||||||||||| |||    
T  16083295 gttgaatactgtcacatgttcagacggatcgccccttccattgaaggtaggcaggtgcggcggtttgaagttctccggaactggagcgttccatatttca 16083196  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    |  || |||||||| || || |||||||| |  |||||||||||||| || | ||| || |||  ||||   |||||||| ||||| || |||||||| |    
T  16083195 gctgagaacggctggggttccggttcatcaagctcgccatgatgagagtccgtcctctcctgcatctgctgctgttggatggtttcaaccgaggcgagta 16083096  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgact 237  Q
      |||||||||||||||||||  ||||||||||||||    
T  16083095 aagcttcattctgttccaacagctgggcgatctgact 16083059  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 256
Target Start/End: Original strand, 102969 - 103166
Alignment:
Q  59 ggcggcttaaagttatcgggaaccggagcgttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagcccttt 158  Q
    ||||| || |||||||| |||||  ||||||||||||| ||||| || |||||||| || || ||||||||||  ||||| |||||||| || ||| | |    
T  102969 ggcggtttgaagttatccggaacaagagcgttccatatttcagttgagaacggctggggttccggttcatccatctcgccgtgatgagagtctgccttct 103068  T
Q  159 cttgctgctgcacttgttggatagtttcgactgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 256  Q
    |||| ||||||  ||| || || ||||| ||||| ||||| || ||||| |||||||||| ||| ||||||||||||||| |||| || ||| |||||    
T  103069 cttgttgctgctgttgctgaatggtttccactgaagcgagcagggcttcgttctgttccagcaactgggcgatctgactcttcatcgtttctccttct 103166  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 15418351 - 15418115
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||||| ||| || || ||||| ||||| || || || || || |  || ||||| || |||||||| |||||||||||||||||||| ||     
T  15418351 gttgaagacggtcatatgttccgatggatcacccctcccgtcaaaggtaggcaagtgaggcggtttgaagttatctggaaccggagcgttccatatttcg 15418252  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    |  || |||||||| || ||||| |||||||  ||||| ||  | || || ||  | || || |||||   ||| ||||| ||||| || || ||||| |    
T  15418251 gctgagaacggctggggttctggctcatccagctcgccgtggcgggagtccgctttctcctgttgctgttgttgctggatggtttccaccgaagcgagta 15418152  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgact 237  Q
    | ||||| |||||||||||||| ||||||||||||||    
T  15418151 gagcttcgttctgttccaacaactgggcgatctgact 15418115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43887 - 44123
Alignment:
Q  1 gttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgtca 100  Q
    |||||||||||||| ||| || || ||||| ||||| || || || || || |  || ||||| || |||||||| |||||||||||||||||||| ||     
T  43887 gttgaagacggtcatatgttccgatggatcacccctcccgtcaaaggtaggcaagtgaggcggtttgaagttatctggaaccggagcgttccatatttcg 43986  T
Q  101 gtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgagaa 200  Q
    |  || |||||||| || ||||| |||||||  ||||| ||  | || || ||  | || || |||||   ||| ||||| ||||| || || ||||| |    
T  43987 gctgagaacggctggggttctggctcatccagctcgccgtggcgggagtccgctttctcctgttgctgttgttgctggatggtttccaccgaagcgagta 44086  T
Q  201 gtgcttcattctgttccaacaattgggcgatctgact 237  Q
    | ||||| |||||||||||||| ||||||||||||||    
T  44087 gagcttcgttctgttccaacaactgggcgatctgact 44123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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