View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9368_low_8 (Length: 259)
Name: NF9368_low_8
Description: NF9368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9368_low_8 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 17461468 - 17461222
Alignment:
| Q |
10 |
gatggacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttgctttcttagcnnnnnnngagagttccctgtaaaag |
109 |
Q |
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|||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17461468 |
gatgtacatcagcaagcgattttgatccccaagcaacccacttaagcgccaccatacattgtttgctttcttagctttttttgagagttccctgtaaaag |
17461369 |
T |
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| Q |
110 |
gttgaaatcaacaatgtgaaaggaaagtgaaatttgatgttttaaccctcatcagaaattctactgaaatagtatagcatatatgattttggattctcag |
209 |
Q |
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| T |
17461368 |
gttgaaatcaacaatgtgaaagaaaagtgaa-tttgatgttttaaccctcatcagaaattctactgaaatagta--gcatatatgattatggactctcag |
17461272 |
T |
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| Q |
210 |
aaagggataacatctataattaatctgtatgctttatttgctactatttt |
259 |
Q |
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| T |
17461271 |
aaagggataacatctataattaatcagtatgctttatttgctactatttt |
17461222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 17455556 - 17455686
Alignment:
| Q |
10 |
gatggacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttgctttcttagcnnnnnnngagagttccctgtaaaag |
109 |
Q |
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| T |
17455556 |
gatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaac |
17455655 |
T |
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| Q |
110 |
gttgaaatcaacaatgtgaaaggaaagtgaa |
140 |
Q |
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| T |
17455656 |
attgaagtcgaaaatgtgaaagaaaagtgaa |
17455686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 259
Target Start/End: Original strand, 774869 - 775083
Alignment:
| Q |
57 |
gccaccatacattgtttgctttcttagcnnnnnnngagagttccctgtaaaaggttgaaatcaacaatgtgaaaggaaagtgaa------------attt |
144 |
Q |
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| T |
774869 |
gccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcaacaatgtgaaagaaaagtgaagtgcataaactaattt |
774968 |
T |
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| Q |
145 |
gatgttttaaccctcatcagaaattctactgaaatagtatagcatatatgattt--tggattctcagaaagggataacatctataattaatctgtatgct |
242 |
Q |
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| T |
774969 |
gatgttttaaccctcatcagaaattctattgaaatag--tagcagatatgattttatggactctcagggaggggtaacatcaataattaatcaatatgtt |
775066 |
T |
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| Q |
243 |
ttatttgctactatttt |
259 |
Q |
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| T |
775067 |
ttctttgctactatttt |
775083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 52142896 - 52142789
Alignment:
| Q |
15 |
acatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttgctttcttagcnnnnnnngagagttccctgtaaaaggttga |
114 |
Q |
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|||| |||| |||||||| ||| |||| | |||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||| |||| |
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| T |
52142896 |
acattagcatgcgattttgatccccaaatagcccacttaggcgccaccatatattgtttgctttcttagctttttttgagagttccctgtgaaagattga |
52142797 |
T |
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| Q |
115 |
aatcaaca |
122 |
Q |
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| T |
52142796 |
agtcaaca |
52142789 |
T |
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