View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9368_low_9 (Length: 240)
Name: NF9368_low_9
Description: NF9368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9368_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 1840074 - 1839858
Alignment:
| Q |
1 |
tgtttaacacttccatttgcaagttttcacccgcgtatattttggattcattgcaaatgagctgaatt-aatctaccagacatgaaacaatttgatgaag |
99 |
Q |
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| T |
1840074 |
tgtttaacacttccatttgcaggttgttacccgcatatattttggattcattgcaaatgagctgaatttaatctaccagccatgaaacaatttgatgaag |
1839975 |
T |
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| Q |
100 |
agttgttgagttctataccaaatggatatggaatttctttacctccacaagtcatgtgaatgcagttatttggtgctgaatcagctgcaactgttgttcc |
199 |
Q |
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| T |
1839974 |
agttgttgaggtctataccaaatggatatggaatttctatacctccacaagtcatgtgactgcagttatttggtgctgaatcagctgcaactgttgttcc |
1839875 |
T |
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| Q |
200 |
taccagtactaccacca |
216 |
Q |
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||| ||||||||||||| |
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| T |
1839874 |
tactagtactaccacca |
1839858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 1865990 - 1865797
Alignment:
| Q |
27 |
tcacccgcgtatattttggattcattgcaaatgagctgaattaatctaccagacatgaaacaatttgatgaagagttgttgagttctataccaaatggat |
126 |
Q |
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| T |
1865990 |
tcaccggcgtatattttggattcattgcaagtgagcggaattaatctacgacccaagaaacactctgatgaggtgttgttgtcatctatgccaaatggat |
1865891 |
T |
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| Q |
127 |
atggaatttctttacctccacaagtcatgtgaatgcagttatttggtgctgaatcagctgcaactgttgttcctaccagtactaccaccatggctaa |
223 |
Q |
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| T |
1865890 |
atggaatttcttgacctccacaag---tgtgactgcaagtatttgttgctgaatcagctgcaactgttgttcctaccagtactaccaccatggctaa |
1865797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 1833042 - 1833119
Alignment:
| Q |
117 |
ccaaatggatatggaatttctttacctccacaagtcatgtgaatgcagttatt---tggtgctgaatcagctgcaactgtt |
194 |
Q |
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| T |
1833042 |
ccaaatggatatggaatttctttatctccacaag---tgtgactgcaggtatttaatggtgttgaatcagctgcaactgtt |
1833119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 1832945 - 1832998
Alignment:
| Q |
20 |
caagttttcacccgcgtatattttggattcattgcaaatgagctgaattaatct |
73 |
Q |
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| T |
1832945 |
caagttatcacccatgtatattttggattcattgcaatggagctgaattaatct |
1832998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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