View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_high_19 (Length: 242)
Name: NF9369_high_19
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 38304238 - 38304444
Alignment:
| Q |
19 |
aaaaacactctcttcccattcccttcaccaccttcctccatcacctcaaatctccaccaaatcttctccaaaccaaaaaactccacgctcttcttctcat |
118 |
Q |
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| T |
38304238 |
aaaaacactctcttcccattcccttcaccaccttcctccatcacctcaaatctccaccaaatcttctccaaaccaaaaaactccacgctcttcttctcat |
38304337 |
T |
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| Q |
119 |
ccatggtttcttccacccatcttcaccacacactcctctttcctcacaccttgtcaatgcttacgttaactttggttcccaccattacgcttttctctcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38304338 |
ccatggtttcttccacccatcttcaccacacactcctctttgctcacaccttgtcaatgcttacgttaactttggttcccaccattacgcttttctcttc |
38304437 |
T |
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| Q |
219 |
ttctctc |
225 |
Q |
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||||||| |
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| T |
38304438 |
ttctctc |
38304444 |
T |
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