View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_high_2 (Length: 500)

Name: NF9369_high_2
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_high_2
NF9369_high_2
[»] chr6 (14 HSPs)
chr6 (7-485)||(26616818-26617310)
chr6 (7-485)||(26722746-26723238)
chr6 (97-205)||(26861059-26861167)
chr6 (423-485)||(26811431-26811493)
chr6 (435-485)||(27214351-27214401)
chr6 (435-485)||(27234827-27234877)
chr6 (155-207)||(26811169-26811221)
chr6 (147-207)||(26974603-26974663)
chr6 (151-206)||(26848236-26848291)
chr6 (228-281)||(26974753-26974804)
chr6 (147-204)||(26958791-26958848)
chr6 (155-204)||(27667862-27667911)
chr6 (146-206)||(27310311-27310371)
chr6 (373-473)||(27665332-27665432)
[»] chr2 (2 HSPs)
chr2 (375-485)||(17993887-17993997)
chr2 (147-206)||(17994256-17994315)


Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 26616818 - 26617310
Alignment:
Q  7 tttggagttcacagaacaatcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg 106  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616818 tttggagctcacagaacaatcatttattttaatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg 26616917  T
Q  107 aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616918 aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 26617017  T
Q  207 ccacacagattagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617018 ccacacagattagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttatt 26617117  T
Q  307 ttcttgtttctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcc------------atctcttatgatttcagcttcga 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||    
T  26617118 ttcttgtttctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcctcctcttcttctatctcttatgatttcagcttcga 26617217  T
Q  395 tgcgttcgtcagttttcggggggctgatactcga--tcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 485  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26617218 tgcgttcgtcagttttcggggggctgatactcgatctcgggcttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttc 26617310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 26722746 - 26723238
Alignment:
Q  7 tttggagttcacagaacaatcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg 106  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722746 tttggagctcacagaacaatcatttattttaatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg 26722845  T
Q  107 aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722846 aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 26722945  T
Q  207 ccacacagattagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722946 ccacacagattagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttatt 26723045  T
Q  307 ttcttgtttctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcc------------atctcttatgatttcagcttcga 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||    
T  26723046 ttcttgtttctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcctcctcttcttctatctcttatgatttcagcttcga 26723145  T
Q  395 tgcgttcgtcagttttcggggggctgatactcga--tcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 485  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26723146 tgcgttcgtcagttttcggggggctgatactcgatctcgggcttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttc 26723238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 26861059 - 26861167
Alignment:
Q  97 agtaaaaatgaaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaac 196  Q
    |||| ||||||||||||||||||| || ||| |||||| |||||||||   ||| || |||||||||||||| |||||||||  | || ||||||||| |    
T  26861059 agtataaatgaaaaagtttaagaagtctaattaataacgtgccacaaggaaaacgaaaataatggttctgcaatgattttcattaaagaaaaagttgatc 26861158  T
Q  197 aataattga 205  Q
    |||||||||    
T  26861159 aataattga 26861167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 26811431 - 26811493
Alignment:
Q  423 actcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 485  Q
    |||||||| |||||||||||  |||||||||||||||||||||| |||||| |||||||||||    
T  26811431 actcgatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatccgaaccttc 26811493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 27214351 - 27214401
Alignment:
Q  435 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 485  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  27214351 ttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttc 27214401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 485
Target Start/End: Complemental strand, 27234877 - 27234827
Alignment:
Q  435 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 485  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  27234877 ttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttc 27234827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 26811169 - 26811221
Alignment:
Q  155 ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc 207  Q
    |||||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  26811169 ataatggttctgcaatgattttcactaaagaaaaagttgaacaataattgatc 26811221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 26974603 - 26974663
Alignment:
Q  147 caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc 207  Q
    ||||||| |||||||||||||| ||| |||||| | || ||||||||||||||||||||||    
T  26974603 caacaaaaataatggttctgcaatgagtttcacaaaagaaaaagttgaacaataattgatc 26974663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 26848236 - 26848291
Alignment:
Q  151 aaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 206  Q
    |||||||||||||||||| |||||||||| | || ||||||||| |||||||||||    
T  26848236 aaagataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat 26848291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 26974753 - 26974804
Alignment:
Q  228 gaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactctta 281  Q
    |||| ||||||||| ||||||||||||  ||||||||||| |||||||||||||    
T  26974753 gaaggaagtttcgctactaatgttaaa--aatggacactcataaataactctta 26974804  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 26958791 - 26958848
Alignment:
Q  147 caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattg 204  Q
    ||||||| |||||||||||| | ||| |||||| | || |||||||||||||||||||    
T  26958791 caacaaaaataatggttctgtaatgagtttcacaaaagaaaaagttgaacaataattg 26958848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 27667911 - 27667862
Alignment:
Q  155 ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattg 204  Q
    ||||||||||||||||| ||||||  | || |||||||||||||||||||    
T  27667911 ataatggttctgcagtgtttttcagtaaagaaaaagttgaacaataattg 27667862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 27310371 - 27310311
Alignment:
Q  146 gcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 206  Q
    |||||||  ||||||||||| || |||||||||| | || ||||||||||| |||||||||    
T  27310371 gcaacaagaataatggttcttcaatgattttcactaaagaaaaagttgaacgataattgat 27310311  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 473
Target Start/End: Complemental strand, 27665432 - 27665332
Alignment:
Q  373 tctcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaagg 472  Q
    ||||||||||||||| |||||||| |||| | |||||  ||||  | || |||||||  || |||||||| || |||||||| ||||||| ||| |||||    
T  27665432 tctcttatgatttcaacttcgatgtgttcattagtttcaggggtaccgacactcgatttggtttcaccggtaacctctataaggctctttctgacaaagg 27665333  T
Q  473 a 473  Q
    |    
T  27665332 a 27665332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 485
Target Start/End: Complemental strand, 17993997 - 17993887
Alignment:
Q  375 tcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaaggag 474  Q
    ||||||| |||||||||||||| |||| | |||||  ||||  | ||||||||||  || |||||||| ||||||||||||||||||| ||| || |||     
T  17993997 tcttatggtttcagcttcgatgtgttcattagtttcaggggtaccgatactcgatatggtttcaccggtaatctctataaagctctttctgacaagggaa 17993898  T
Q  475 tccgaaccttc 485  Q
    | |||||||||    
T  17993897 ttcgaaccttc 17993887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 17994315 - 17994256
Alignment:
Q  147 caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 206  Q
    ||||||| |||||||||||||| |||||||||  | || |||||||||||||||||||||    
T  17994315 caacaaaaataatggttctgcaatgattttcagtaaagaaaaagttgaacaataattgat 17994256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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