View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_high_23 (Length: 215)

Name: NF9369_high_23
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_high_23
NF9369_high_23
[»] chr1 (16 HSPs)
chr1 (17-209)||(5389204-5389395)
chr1 (17-209)||(46692601-46692793)
chr1 (17-209)||(5459268-5459460)
chr1 (17-209)||(24449711-24449904)
chr1 (17-205)||(41920559-41920753)
chr1 (17-142)||(31585608-31585734)
chr1 (26-147)||(6764225-6764346)
chr1 (17-209)||(30685705-30685878)
chr1 (17-209)||(24684273-24684451)
chr1 (109-184)||(6804739-6804814)
chr1 (72-174)||(7857814-7857915)
chr1 (72-181)||(46814277-46814387)
chr1 (38-145)||(27031687-27031793)
chr1 (134-206)||(31584823-31584894)
chr1 (96-148)||(24659113-24659166)
chr1 (130-182)||(32882586-32882638)
[»] chr7 (17 HSPs)
chr7 (17-209)||(38306368-38306560)
chr7 (17-209)||(47325665-47325859)
chr7 (17-209)||(44353345-44353538)
chr7 (43-209)||(31971916-31972082)
chr7 (17-209)||(10244289-10244480)
chr7 (17-184)||(5860095-5860262)
chr7 (17-184)||(37795096-37795263)
chr7 (43-209)||(3867249-3867415)
chr7 (18-205)||(3419441-3419628)
chr7 (15-209)||(25160918-25161109)
chr7 (17-138)||(33435217-33435337)
chr7 (73-205)||(3419182-3419314)
chr7 (103-209)||(40726286-40726392)
chr7 (72-146)||(6585043-6585118)
chr7 (17-184)||(41089556-41089721)
chr7 (72-148)||(34390123-34390200)
chr7 (38-169)||(35745644-35745779)
[»] chr2 (13 HSPs)
chr2 (17-199)||(10524207-10524388)
chr2 (17-184)||(39338673-39338839)
chr2 (15-184)||(17116686-17116856)
chr2 (60-209)||(387324-387476)
chr2 (72-181)||(7874452-7874561)
chr2 (51-181)||(14106332-14106462)
chr2 (72-181)||(7460837-7460947)
chr2 (72-181)||(5254417-5254522)
chr2 (72-158)||(14405359-14405447)
chr2 (72-146)||(10173425-10173499)
chr2 (72-146)||(16952229-16952304)
chr2 (72-146)||(17022894-17022969)
chr2 (72-146)||(17060200-17060275)
[»] chr8 (16 HSPs)
chr8 (17-209)||(20138533-20138726)
chr8 (18-206)||(24995179-24995368)
chr8 (17-209)||(31207143-31207336)
chr8 (17-209)||(12898057-12898248)
chr8 (17-184)||(37986665-37986832)
chr8 (17-184)||(9519606-9519774)
chr8 (19-209)||(34388788-34388977)
chr8 (18-209)||(41893185-41893374)
chr8 (18-209)||(32066065-32066268)
chr8 (15-110)||(22773604-22773699)
chr8 (17-209)||(36630945-36631123)
chr8 (99-184)||(16457282-16457367)
chr8 (110-184)||(22773815-22773889)
chr8 (102-184)||(35821432-35821514)
chr8 (83-174)||(38577606-38577699)
chr8 (72-126)||(15821244-15821299)
[»] chr5 (7 HSPs)
chr5 (17-209)||(18593350-18593542)
chr5 (18-209)||(698469-698659)
chr5 (17-209)||(34378205-34378399)
chr5 (17-209)||(29087589-29087778)
chr5 (38-209)||(7161795-7161969)
chr5 (19-209)||(18313425-18313614)
chr5 (138-209)||(7451601-7451672)
[»] chr3 (17 HSPs)
chr3 (18-209)||(47235806-47235998)
chr3 (15-209)||(53248005-53248200)
chr3 (17-209)||(45163962-45164154)
chr3 (15-209)||(34475539-34475730)
chr3 (17-182)||(20611890-20612054)
chr3 (17-184)||(2392313-2392480)
chr3 (17-184)||(2394077-2394244)
chr3 (15-209)||(31482989-31483180)
chr3 (18-210)||(43012484-43012678)
chr3 (17-184)||(17551064-17551226)
chr3 (51-209)||(19176645-19176806)
chr3 (48-184)||(9583862-9583997)
chr3 (72-184)||(30352248-30352358)
chr3 (51-181)||(23328160-23328290)
chr3 (38-174)||(40023389-40023525)
chr3 (89-182)||(7105019-7105113)
chr3 (17-174)||(45398904-45399060)
[»] chr6 (4 HSPs)
chr6 (48-205)||(10541970-10542127)
chr6 (17-209)||(3117600-3117794)
chr6 (64-209)||(14663231-14663380)
chr6 (161-209)||(3254209-3254257)
[»] chr4 (12 HSPs)
chr4 (17-209)||(8255134-8255327)
chr4 (17-209)||(8268552-8268745)
chr4 (17-209)||(30167346-30167538)
chr4 (17-209)||(30964548-30964737)
chr4 (74-184)||(8705951-8706061)
chr4 (106-209)||(20464786-20464889)
chr4 (18-137)||(4305833-4305951)
chr4 (17-174)||(31050478-31050634)
chr4 (72-183)||(35341148-35341258)
chr4 (74-148)||(2825946-2826020)
chr4 (72-144)||(19673259-19673332)
chr4 (152-209)||(36689586-36689643)
[»] scaffold0343 (1 HSPs)
scaffold0343 (17-209)||(5813-6004)
[»] scaffold0068 (1 HSPs)
scaffold0068 (17-209)||(35558-35746)
[»] scaffold0434 (1 HSPs)
scaffold0434 (166-209)||(2454-2497)
[»] scaffold0085 (1 HSPs)
scaffold0085 (135-184)||(48560-48609)
[»] scaffold0172 (1 HSPs)
scaffold0172 (106-173)||(19113-19177)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 5389395 - 5389204
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5389395 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 5389296  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    ||||||| ||||| |||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5389295 ggtgttc-ttgtaagtgagtagtgacgatgggcggtggtggataccgtgtttacggtgcttgttttttgggagtttgttttaggtggtgatgt 5389204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 46692793 - 46692601
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||  |||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||    
T  46692793 ggaggtcgcgaggtttgtgatagctgcattatcctccggttaagtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggag 46692694  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||| ||||||||||||||||||||| |||| |||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46692693 ggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgtttacagtgcttgtttttttggagtttgttttaggtggtgatgt 46692601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 5459268 - 5459460
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    |||||| |||||||||||| ||||| |||| |||||| |||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||     
T  5459268 ggaggttgcgaggtttgtgatagctgcatgatccttcagttaggtgctctttgaaatgtggctcagcttgggtgttggggtctggaagttttattttgat 5459367  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||||||||||| || |||||||    
T  5459368 ggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgattgtttttttggagtttgttttaagtagtgatgt 5459460  T

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Target: chr1; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 24449904 - 24449711
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||| | |||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||    
T  24449904 ggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctcttcgaaatgcggctcagcttgggtgttggggtctaggagttttattttgag 24449805  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtt-ttttgggagtttgttttaggtggtgatgt 209  Q
    |||||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||||| |  |||||||||||||||    
T  24449804 ggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttgttttttttggagtctactttaggtggtgatgt 24449711  T

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Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 41920559 - 41920753
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtcct-----tcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttatt 111  Q
    ||||||||||||||||||| ||||| |||| ||||     || |||| |||||||||   |||||||||||||||||||||||||||| |||||||||||    
T  41920559 ggaggtcgcgaggtttgtgatagctgcatgatcctaaccttcagttaggtgctcttcatcatgtggctcagcttgggtgttggggtcttggagttttatt 41920658  T
Q  112 ttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttg-ttttttgggagtttgttttaggtggtg 205  Q
    ||||||||||| ||||| |||||||||||||||| |||| ||||| || ||||||||||| |||||| ||||||  |||||||||||||||||||    
T  41920659 ttgagggtgttttttgtgggtgagtagtgacgataggcggtggtgaataccgtgtttacattgcttgtttttttttgagtttgttttaggtggtg 41920753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 31585734 - 31585608
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgtt-ggggtctgggagttttattttga 115  Q
    ||||||||||||||||||| |||||  ||| ||||| ||||| ||||||||||| |||||||| |||||||||||| |||||||| ||||||||||||||    
T  31585734 ggaggtcgcgaggtttgtgatagctgtatgatcctttggttaggtgctcttcgaaatgtggctaagcttgggtgttgggggtctgagagttttattttga 31585635  T
Q  116 gggtgttctttgtaggtgagtagtgac 142  Q
    ||||||||||||| |||||||||||||    
T  31585634 gggtgttctttgtgggtgagtagtgac 31585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 6764346 - 6764225
Alignment:
Q  26 gaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctt 125  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||| |||||||||| ||||| |  |||||||||||||||||||||| ||| |||||||    
T  6764346 gaggtttgtgatagctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggagttttattttcaggatgttctt 6764247  T
Q  126 tgtaggtgagtagtgacgatgg 147  Q
    ||| ||||||||||||||||||    
T  6764246 tgtgggtgagtagtgacgatgg 6764225  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 30685878 - 30685705
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||| ||||| ||||| |||||| | ||||||||||||||||||||||||||| |                       
T  30685878 ggaggtcgcgaggtttgtgatagctgcatgatcctttggttaggtgctccttgatatgtggctcagcttgggtgttgggat------------------- 30685798  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttt-tgggagtttgttttaggtggtgatgt 209  Q
     ||||||||||| |||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||| | ||||| ||||||||||||||||||    
T  30685797 -gtgttctttgtgggtgtgtagtgaagatgggcggtggtggataccgtgtttacattgcttgtttttgttggagtctgttttaggtggtgatgt 30685705  T

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Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 24684451 - 24684273
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||| |||  || | |||| ||||||||| | ||||||||||| |||||||||| ||||| ||| |||||||| | |||||| |||| |    
T  24684451 ggaggtcgcgaggtt-gtggaagatgcatgatccttcggtcaggtgctcttcgaaatgtggctcaacttggatgtcggggtctgcgtgttttagtttg-g 24684354  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||            ||||||||||||||||||| ||||||||  ||||||||||| | ||||||||| ||||||||||||||||||||||||    
T  24684353 ggt------------tgagtagtgacgatgggcggtggtggatatcgtgtttacagagtttgtttttttggagtttgttttaggtggtgatgt 24684273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 6804739 - 6804814
Alignment:
Q  109 attttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    ||||| |||||||||||||| |||||| |||||||||||||| |||||||| | || |||||||||||||||||||    
T  6804739 attttcagggtgttctttgtgggtgaggagtgacgatgggcggtggtggatactgtatttacagtgcttgtttttt 6804814  T

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Target: chr1; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 7857814 - 7857915
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttac 170  Q
    ||||||||||| ||||||||||  |||||||||||||||||||| ||||||||| ||  ||||||||||| ||||||| | | |||||  ||||||||||    
T  7857814 atgtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatgggtggttgtgga--ccgtgtttac 7857911  T
Q  171 agtg 174  Q
    ||||    
T  7857912 agtg 7857915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 46814387 - 46814277
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgaggg-tgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttac 170  Q
    ||||||||| || |||||||||  || |||||||||||||| ||||| |||| |||| ||||||||||||||||||| || | |||||| | ||||||||    
T  46814387 atgtggctcggcgtgggtgttgaagtatgggagttttatttcgaggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtgtttac 46814288  T
Q  171 agtgcttgttt 181  Q
    || | ||||||    
T  46814287 agggtttgttt 46814277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 27031793 - 27031687
Alignment:
Q  38 agctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtaggtgagt 136  Q
    |||| |||| || |||||||||| ||| ||||| ||||||||||| |||| |||||  |||||||||||||||||||| ||||||||| ||  |||||||    
T  27031793 agctgcatgttcattcggttaagagcttttcga-atgtggctcagtttggatgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagt 27031696  T
Q  137 agtgacgat 145  Q
    |||||||||    
T  27031695 agtgacgat 27031687  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 31584894 - 31584823
Alignment:
Q  134 agtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtga 206  Q
    ||||||||||||| ||| |||||||| |||||||||||||| ||||||||| ||||  |||||||||||||||    
T  31584894 agtagtgacgatgagcggtggtggataccgtgtttacagtgattgtttttttggag-gtgttttaggtggtga 31584823  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 24659113 - 24659166
Alignment:
Q  96 gtctgggagttttattttga-gggtgttctttgtaggtgagtagtgacgatggg 148  Q
    |||||||||||||||||||| ||||||| ||||  |||||||||||||||||||    
T  24659113 gtctgggagttttattttgaggggtgttatttgggggtgagtagtgacgatggg 24659166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 32882586 - 32882638
Alignment:
Q  130 ggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttt 182  Q
    ||||||||||||||||||| | || |||||  ||||||||||||||| |||||    
T  32882586 ggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgtttt 32882638  T

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Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 38306368 - 38306560
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38306368 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgtgagttttattttgag 38306467  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||||||||||||||||||||||| | ||||||||  ||||| | |||| |||||||||||||||||||||||||||||||||||    
T  38306468 ggtgttctttgtaggtgagtagtgacgatgggtggtggtggatatcgtgtctgcagttcttgttttttgggagtttgttttaggtggtgatgt 38306560  T

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Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 47325859 - 47325665
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| |||||  ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47325859 ggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttgag 47325760  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtt--ttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||||  |||| | ||||||||||||||||||||||    
T  47325759 ggtgttctttgtgggtgagtagtgacgatgggcgatgatggatactgtgtttacagtgcttgtttttttttgaagtttgttttaggtggtgatgt 47325665  T

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Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 44353538 - 44353345
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttatttt-ga 115  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| ||||| | | |||||||||||||||||||||||||||||||| ||    
T  44353538 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttga 44353439  T
Q  116 gggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  44353438 gggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagtctgttttaggtggtgatgt 44353345  T

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Target: chr7; HSP #4
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 31972082 - 31971916
Alignment:
Q  43 catggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgac 142  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  31972082 catgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttgtgggtgagtagtgac 31971983  T
Q  143 gatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  31971982 gatgggcggtggttgataccgtgtttacagtgcttgtttttttggagtttgttttaggtggttatgt 31971916  T

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Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 10244289 - 10244480
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||| | |||| ||||||||||| |||||||| ||  |||||||||||||||||||| |||||||||| ||||| || |||    
T  10244289 ggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctctttgaattgtggctcagcttgggtgtttgggtctgggatttttagttggag 10244388  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||| ||||||| |||||||||||||||||||||||||||||| || ||||||| |||||| |||||| ||||||||||||||||||||||||    
T  10244389 ggtggtctttgtgggtgagtagtgacgatgggcgatggtggataccatgtttacggtgcttatttttt-ggagtttgttttaggtggtgatgt 10244480  T

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Target: chr7; HSP #6
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 5860262 - 5860095
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  5860262 ggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttcag 5860163  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    |||||||||||| | |||||||||||||||||| |||||| || ||||||| | ||||||||||||||    
T  5860162 ggtgttctttgtggatgagtagtgacgatgggcaatggtgaataccgtgttaatagtgcttgtttttt 5860095  T

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Target: chr7; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 37795096 - 37795263
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||| || |||||||||||||||    
T  37795096 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtggctcagcttgggtgttggggtttgagagttttattttgag 37795195  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    |||||||||||| | | |||||| | |||||||| |||||||| ||||||||||||||||| ||||||    
T  37795196 ggtgttctttgtggttaagtagtaatgatgggcggtggtggataccgtgtttacagtgcttttttttt 37795263  T

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Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 3867249 - 3867415
Alignment:
Q  43 catggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgac 142  Q
    |||| ||||| ||| | ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||  |||||||||||||    
T  3867249 catgatcctttggtcaggtgctcttcgatatgtggctcagcttgggtgttggagtatggaagttttattttgagggtgttctttgggggtgagtagtgac 3867348  T
Q  143 gatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    ||||| || ||||||||  ||||||||||||  || || |   |||||||||||| |||||||||||    
T  3867349 gatggacggtggtggatatcgtgtttacagttgtttttgtgaaggagtttgttttgggtggtgatgt 3867415  T

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Target: chr7; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 3419628 - 3419441
Alignment:
Q  18 gaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagg 117  Q
    |||||| | ||||||||| ||||| | || ||||||||||| |||| ||||||  ||||||| | ||||||||||||||| ||||||||||||||| |||    
T  3419628 gaggtcacaaggtttgtgatagctgcttgatccttcggttaggtgcgcttcgaattgtggcttaacttgggtgttggggtttgggagttttattttaagg 3419529  T
Q  118 gtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtg 205  Q
    |||||||||||  ||||||||||||||||  || ||||||||  | |||||||| || ||||||||| ||| | ||||||||||||||    
T  3419528 gtgttctttgtgagtgagtagtgacgatgaacggtggtggatatcatgtttacaatgnttgtttttttggattctgttttaggtggtg 3419441  T

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Target: chr7; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 25160918 - 25161109
Alignment:
Q  15 ttggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttg 114  Q
    ||||||||| | ||||||||| |||||   || |||||| |||| |||||||| || |||||||||| ||| | |||||||||||| |||||||  |||     
T  25160918 ttggaggtctcaaggtttgtgatagctgtgtgatccttcagttaggtgctcttggaaatgtggctcaacttagatgttggggtctgagagtttt--ttta 25161015  T
Q  115 agggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    | |||||||||||| ||||||||||||||||||||| |||||||| |  |||||||| |||||||||||| | ||| ||||||||||||||||||    
T  25161016 aaggtgttctttgtgggtgagtagtgacgatgggcgttggtggatactatgtttacattgcttgtttttt-gaagtctgttttaggtggtgatgt 25161109  T

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Target: chr7; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 33435217 - 33435337
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||| |||  ||||||||| ||||||||| | |||||||||||  ||||||||||||||| ||||| |||||| ||||||| |||||||    
T  33435217 ggaggtcgcgaggtt-gtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttgttgaggtctgagagttttcttttgag 33435315  T
Q  117 ggtgttctttgtaggtgagtag 138  Q
    |||||||||||  |||||||||    
T  33435316 ggtgttctttgggggtgagtag 33435337  T

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Target: chr7; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 3419314 - 3419182
Alignment:
Q  73 tgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacag 172  Q
    ||||||| | ||||||||||||||| ||||||||||||||| |||||||| |||||  ||||||||||| ||||  || ||||||||  | ||||||||     
T  3419314 tgtggcttaacttgggtgttggggtttgggagttttattttaagggtgttttttgtgagtgagtagtgatgatgaacggtggtggatatcatgtttacaa 3419215  T
Q  173 tgcttgttttttgggagtttgttttaggtggtg 205  Q
    |||||||||||| ||| | ||||||||||||||    
T  3419214 tgcttgtttttttggattctgttttaggtggtg 3419182  T

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Target: chr7; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 40726392 - 40726286
Alignment:
Q  103 agttttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttg-ttttttgggagtttgttttaggt 201  Q
    |||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||| |||||||||| ||||||| |||||| ||||| ||||||||||    
T  40726392 agttttattttgagggtgttctttgt-ggtgagtagtgatgataggcggtggtggataccgtgtttaccgtgcttgatttttttggagtctgttttaggt 40726294  T
Q  202 ggtgatgt 209  Q
    ||| ||||    
T  40726293 ggtaatgt 40726286  T

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Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 6585043 - 6585118
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtaggtgagtagtgacgatg 146  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||| | |||| ||||||||||||||||||    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacgatg 6585118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 41089721 - 41089556
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||| |||  |||| |||| | ||||| | | |||||||||||  ||| |||||   |||||||| |||||||||||||||||||||||    
T  41089721 ggaggtcgcgaggtt-gtggaagctgcatgattcttcgttgaggtgctcttcgaagtgtagctcaagatgggtgttagggtctgggagttttattttgag 41089623  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    |||||||||||  ||| | ||||||| ||||||| |||| ||| | |||||||||   ||||||||||    
T  41089622 ggtgttctttgcgggt-aatagtgacaatgggcggtggtagatactgtgtttacatgacttgtttttt 41089556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 34390123 - 34390200
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtaggtgagtagtgacgatggg 148  Q
    |||||||||| |||||||||||  |||||||||||||||||||| ||||||||||||  | |||||||||||||||||    
T  34390123 atgtggctcaacttgggtgttgtagtctgggagttttattttgaggggtgttctttggggatgagtagtgacgatggg 34390200  T

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Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 35745779 - 35745644
Alignment:
Q  38 agctacatggtccttcggttaagtgctcttcgatat---gtggctcagcttgggtgttggggtctgggagttttattttgag-ggtgttctttgtaggtg 133  Q
    |||| |||| || |||||||| | ||| ||||||||   ||||||||||||||||||||  |||||   ||||||||||||| |||||||||||  ||||    
T  35745779 agctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctgactgttttattttgagaggtgttctttgggggtg 35745680  T
Q  134 agtagtgacgatgggcgatggtggatgccgtgttta 169  Q
    ||||||||||||||| |  ||||||||  |||||||    
T  35745679 agtagtgacgatgggtgggggtggatgttgtgttta 35745644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 10524207 - 10524388
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  10524207 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagttttatttggag 10524306  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttag 199  Q
    |||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  10524307 ggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacggtgcttgtttttt-ggagtttgttttag 10524388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 39338839 - 39338673
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| |||||  ||| ||||||||||| |||||||||||  |||| |||||||||||||||| ||||||||||||||||||||||    
T  39338839 ggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaattgtgactcagcttgggtgttgaggtctgggagttttattttgag 39338740  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    |||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  39338739 ggtgttctttgtgggtgagtagtgacgatgggcgatggtggat-acttgtttacagtgcttgtttttt 39338673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 17116856 - 17116686
Alignment:
Q  15 ttggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagtttt-atttt 113  Q
    ||||||||||||||||||||| || |||| || ||| ||||||| ||||||||||  ||||||||||||||||||||||||||||| ||||||| |||||    
T  17116856 ttggaggtcgcgaggtttgtgatatctacttgatccatcggttaggtgctcttcgtaatgtggctcagcttgggtgttggggtctgagagtttttatttt 17116757  T
Q  114 gagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||    
T  17116756 gagggtgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgtttacagtgcttttttttt 17116686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 387324 - 387476
Alignment:
Q  60 gtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggat 159  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||| ||    
T  387324 gtgctcttcgataggtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgggggtgaatagtgacgatgggcggtggtgaat 387423  T
Q  160 gccgtgtttacagtgcttgttttt-tg--ggagtttgttttaggtggtgatgt 209  Q
       ||||||||| ||||||||||| ||  ||||| ||||||||||||||||||    
T  387424 tttgtgtttacaatgcttgtttttgtgaaggagtctgttttaggtggtgatgt 387476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 7874452 - 7874561
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgaggg-tgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttac 170  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||| |||||||||  ||||||||||||||||||| | | |||||| | ||||||||    
T  7874452 atgtggctcagcttgggtgttgaagtcttggagttttattttgagggatgttctttg-gggtgagtagtgacgatgggtggttgtggatactgtgtttac 7874550  T
Q  171 agtgcttgttt 181  Q
    |||| ||||||    
T  7874551 agtgtttgttt 7874561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 14106462 - 14106332
Alignment:
Q  51 ttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtaggtgagtagtgacgatgggc 149  Q
    |||||||||| ||| | ||| ||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||  ||||||||||||||||| |     
T  14106462 ttcggttaagagctttacga-atgtggctcagcttgggtgttgaagtctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagt 14106364  T
Q  150 gatggtggatgccgtgtttacagtgcttgttt 181  Q
    | | |||||| | ||||||||| || ||||||    
T  14106363 ggttgtggatactgtgtttacaatgtttgttt 14106332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 7460837 - 7460947
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttac 170  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||  | ||||||||||||||| | | | ||||||   ||||||||    
T  7460837 atgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgtttac 7460936  T
Q  171 agtgcttgttt 181  Q
    |||| ||||||    
T  7460937 agtgtttgttt 7460947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 5254417 - 5254522
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgaggg-tgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttac 170  Q
    ||||||||||| ||||||||||  ||||| |||||||   ||||||| |||||||||  ||||||||||||||||||| | | |||||| | ||||||||    
T  5254417 atgtggctcagtttgggtgttgaagtctgagagtttt---ttgaggggtgttctttg--ggtgagtagtgacgatgggtggttgtggatactgtgtttac 5254511  T
Q  171 agtgcttgttt 181  Q
    |||| ||||||    
T  5254512 agtgtttgttt 5254522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 14405359 - 14405447
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgaggg-tgttc-tttgtaggtgagtagtgacgatgggcgatggtgga 158  Q
    |||||||||  |||||||||||  ||||||||||||||||||||||| ||||| ||||  ||||||||||||| ||||| ||| |||||    
T  14405359 atgtggctcgacttgggtgttgaagtctgggagttttattttgagggatgttcttttgggggtgagtagtgacaatgggtgattgtgga 14405447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 10173499 - 10173425
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgagg-gtgttctttgtaggtgagtagtgacgatg 146  Q
    |||||||||||||| ||||||| || ||| |||||| ||||||||| || |||||||  |||||||||||||||||    
T  10173499 atgtggctcagctttggtgttgaggactgagagtttaattttgaggagtattctttg-gggtgagtagtgacgatg 10173425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 16952304 - 16952229
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgaggg-tgttctttgtaggtgagtagtgacgatg 146  Q
    |||||| ||| ||| ||||||| || |||||||||| |||| ||||| |||||||||  |||||||||||||||||    
T  16952304 atgtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 16952229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 17022969 - 17022894
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgaggg-tgttctttgtaggtgagtagtgacgatg 146  Q
    |||||| ||| ||| ||||||| || |||||||||| |||| ||||| |||||||||  |||||||||||||||||    
T  17022969 atgtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 17022894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 17060275 - 17060200
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgaggg-tgttctttgtaggtgagtagtgacgatg 146  Q
    |||||| ||| ||| ||||||| || |||||||||| |||| ||||| |||||||||  |||||||||||||||||    
T  17060275 atgtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 17060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 20138533 - 20138726
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttatttt-ga 115  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| ||||| | | |||||||||||||||||||||||||||||||| ||    
T  20138533 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttga 20138632  T
Q  116 gggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  20138633 gggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagtctgttttaggtggtgatgt 20138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 24995368 - 24995179
Alignment:
Q  18 gaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttgggg-tctgggagttttattttgag 116  Q
    |||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||    
T  24995368 gaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctaggagttttattttgag 24995269  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtga 206  Q
    ||||||||||||  |||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||    
T  24995268 ggtgttctttgtgcgtgagtagtgacgatgggcggtggtggataccgtgtttacaatgcttgtttttttggagattgttttaggtggtga 24995179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 31207336 - 31207143
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| |||||  |||  |||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||    
T  31207336 ggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggagttttattttgag 31207237  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgc-ttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| || ||||||  |||| ||||||||||||||||||    
T  31207236 ggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgcttttttttttttgagtctgttttaggtggtgatgt 31207143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 12898248 - 12898057
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||    
T  12898248 ggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtcttagagttttattttgag 12898150  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||| |||||||||||||||||  || | |||||| || ||||| ||  | ||||||||| ||||||||||||||||||||||||    
T  12898149 ggtgttctttgtgggtgagtagtgacgatgaacggttgtggattccatgtttgcatggattgtttttttggagtttgttttaggtggtgatgt 12898057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 37986832 - 37986665
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| | || ||||||||||| ||||||||||| |||||||||||||||||||||  |||||||||||||||||| |||    
T  37986832 ggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgtttcggtctgggagttttatttggag 37986733  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    |||||||||||| |||||||| |||||||||| | |||| ||| ||||||||||| ||||||||||||    
T  37986732 ggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgtttacaatgcttgtttttt 37986665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 9519606 - 9519774
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttgggg-tctgggagttttattttga 115  Q
    |||||| |||| ||||||| ||||| |||| || |||||||| ||||||||||| || |||||||||||||||||||||| |||| ||||||||||||||    
T  9519606 ggaggttgcgaagtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctgagagttttattttga 9519705  T
Q  116 gggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| || ||||||    
T  9519706 gggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgattttttttt 9519774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 34388977 - 34388788
Alignment:
Q  19 aggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgaggg 118  Q
    |||||| |||||||||| ||||||  || |||||| |||| ||| |||||   |||||||||||||||||||||||||| || |||||||||||||||||    
T  34388977 aggtcgtgaggtttgtgatagctag-tgatccttcagttaggtgttcttcatcatgtggctcagcttgggtgttggggtatgagagttttattttgaggg 34388879  T
Q  119 tgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgc-ttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||| |||||||||||||||| |||| ||||||||  |||||||||| ||| || |||||| ||||||||||||||||||||||||    
T  34388878 tgttctttgtgggtgagtagtgacgataggcggtggtggat-acgtgtttacattgctttctttttttggagtttgttttaggtggtgatgt 34388788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 41893374 - 41893185
Alignment:
Q  18 gaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagg 117  Q
    |||||||| ||||||||| ||||| |||| ||||||  | | || |||||||| |||||||||||||||||||||| |||||||||||| |||||| |||    
T  41893374 gaggtcgcaaggtttgtgatagctgcatgatccttctat-aggtactcttcgaaatgtggctcagcttgggtgttgaggtctgggagttctattttcagg 41893276  T
Q  118 gtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    ||||||||||| |||||||||||||||||| || |||||||| ||||||||||||| ||||||||||   ||| |||||||||| |||||||    
T  41893275 gtgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgtttacagttcttgtttttt-ttagtctgttttaggtagtgatgt 41893185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 32066268 - 32066065
Alignment:
Q  18 gaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagg 117  Q
    ||||| |||||||||||| ||||| |||| || ||||||||  ||||||| || |||||| |||||||||||||||||||||| ||||||||||| ||||    
T  32066268 gaggttgcgaggtttgtgatagctgcatgatcattcggttagatgctctttgaaatgtggttcagcttgggtgttggggtctgagagttttatttggagg 32066169  T
Q  118 gtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtt------------tacagtgcttgttttttgggagtttgttttaggtggtg 205  Q
    |||||||||||  |||||||||||||||||||| |||||||| | |||||            ||||||| | ||||||| ||||||||||||||||||||    
T  32066168 gtgttctttgtgagtgagtagtgacgatgggcggtggtggatacagtgttggttgtggtggatacagtgttggtttttttggagtttgttttaggtggtg 32066069  T
Q  206 atgt 209  Q
    ||||    
T  32066068 atgt 32066065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 22773604 - 22773699
Alignment:
Q  15 ttggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttat 110  Q
    ||||||||| ||||||||||| || ||||||| |||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  22773604 ttggaggtcacgaggtttgtgatatctacatgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgggagttttat 22773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 36630945 - 36631123
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||| |||  |||| |||| ||||||||| | ||||||||||| |||||||||| ||||| ||| |||||||| | |||||| |||| |    
T  36630945 ggaggtcgcgaggtt-gtgggagctgcatgatccttcggtcaggtgctcttcgaaatgtggctcaacttggatgtgggggtctgcgtgttttagtttggg 36631043  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    ||||             |||||| |||||||||| |||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  36631044 ggtg-------------agtagttacgatgggcggtggtggataccgtgtttacagtgtttgtttttttggagtctgttttaggtggtgatgt 36631123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 16457367 - 16457282
Alignment:
Q  99 tgggagttttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    ||||||||||||||| |||||| ||||| | |||||||||||||||||| || |||||||| ||||||||||||||||||||||||    
T  16457367 tgggagttttattttcagggtggtctttatgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgtttttt 16457282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 22773815 - 22773889
Alignment:
Q  110 ttttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||| | || |||||||| ||||||||||||    
T  22773815 ttttgagggtgttctttgtgggtgagtagtgacgatgggcagtggtggttaccatgtttacaatgcttgtttttt 22773889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 35821432 - 35821514
Alignment:
Q  102 gagttttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    |||||||||||| |||||||||||||  | |||||||||| |||||||| || | ||| | ||||||||||||||||||||||    
T  35821432 gagttttattttaagggtgttctttgaggatgagtagtgatgatgggcggtgctagatactgtgtttacagtgcttgtttttt 35821514  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 38577699 - 38577606
Alignment:
Q  83 cttgggtgttggggtctggg-agttttattttgagg-gtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtg 174  Q
    |||||||||||  ||||||| |||||||||||| || ||||||||||  | ||||||||||||||||  ||| |||||| | ||||||||||||    
T  38577699 cttgggtgttgaagtctggggagttttattttgtggagtgttctttggggatgagtagtgacgatggatgattgtggatactgtgtttacagtg 38577606  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 15821299 - 15821244
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgagg-gtgttcttt 126  Q
    ||||||||||||| || |||||  |||||||||||||||||||||| |||||||||    
T  15821299 atgtggctcagctcggatgttgaagtctgggagttttattttgaggagtgttcttt 15821244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 18593350 - 18593542
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    |||||||||||| |||||| ||| | |||| ||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||||||| |||    
T  18593350 ggaggtcgcgagatttgtgataggtgcatgatccttcggttaggtgttcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttggag 18593449  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    | |||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  18593450 gatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttgtttttttggagtttgtgttaggtggtgatgt 18593542  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 698469 - 698659
Alignment:
Q  18 gaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagg 117  Q
    ||||| |||||||||||| ||||| |||  ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  698469 gaggttgcgaggtttgtgatagctgcataatccttcggttaggtgctctttgaaatgtggctcagcttgggtgttggggtctgagagttttatttggagg 698568  T
Q  118 gtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    ||||||||||| |||||||||||||||| ||||||||||||| |||  ||||||||| | ||||||| ||||||||||||| ||||||||||    
T  698569 gtgttctttgtgggtgagtagtgacgatcggcgatggtggataccg-atttacagtgttggtttttttggagtttgttttaagtggtgatgt 698659  T

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Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 34378205 - 34378399
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||| |   || |||||||||||  |||||||||  |||||||||||||||||||||||||| || |||||||||||||||    
T  34378205 ggaggtcgcgaggtttgtgatagttgtttgatccttcggttagatgctcttcgtaatgtggctcagcttgggtgttggggtttgagagttttattttgag 34378304  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttggg---agtttgttttaggtggtgatgt 209  Q
    |||||||||||| |||||||||||||||||| || |||||||| ||||||||||| ||||||||||||      ||||||||||||||||||||||    
T  34378305 ggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttaca-tgcttgttttttttttttagtttgttttaggtggtgatgt 34378399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 29087589 - 29087778
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    |||||||||||||||  || ||||| |||| ||||| ||| | |||||||||| ||||||||||| ||| | |||||||||||||||| |||||||||||    
T  29087589 ggaggtcgcgaggtta-tggtagctccatgatcctttggtcaggtgctcttcg-tatgtggctcaacttagatgttggggtctgggagctttattttgag 29087686  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    ||| ||||||   ||||||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  29087687 ggt-ttctttaggggtgagtagtgacgatgggcggtggtgaataccgtgtttacagtgcttgtttttttggagtctgttttaggtgctgatgt 29087778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 7161969 - 7161795
Alignment:
Q  38 agctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagta 137  Q
    |||| |||| ||||| ||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||  ||||||||    
T  7161969 agctgcatgatcctttggtcaggtgttcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 7161870  T
Q  138 gtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttt-tg--ggagtttgttttaggtggtgatgt 209  Q
    |||||| |||| | |||||||   |||||||||||||||||||||| ||  ||||| |||||||||| |||||||    
T  7161869 gtgacgttgggtggtggtggaaatcgtgtttacagtgcttgtttttgtgaaggagtctgttttaggtagtgatgt 7161795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 18313614 - 18313425
Alignment:
Q  19 aggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgaggg 118  Q
    ||||||||||||||||| ||||| |||| || |||| ||| ||||||||||| |||||||| || |||||| || || | | ||||||||  ||| ||||    
T  18313614 aggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagtttgggttttaggattttggagtttttcttt-aggg 18313516  T
Q  119 tgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||  | ||||||||||||||||| | | || |||||  ||||||||| ||| ||||||||| ||||| ||||||||||||||||||    
T  18313515 tgttcttcatgggtgagtagtgacgatgagtggtgatggatatcgtgtttacggtgtttgtttttttggagtctgttttaggtggtgatgt 18313425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 7451601 - 7451672
Alignment:
Q  138 gtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    ||||||||||  | |||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  7451601 gtgacgatggaaggtggtggataccgtgtttgcagtgcttgtttttttggagtttgtgttaggtggtgatgt 7451672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 47235806 - 47235998
Alignment:
Q  18 gaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagg 117  Q
    |||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||    
T  47235806 gaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcgagttttattttgagg 47235905  T
Q  118 gtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttggga-gtttgttttaggtggtgatgt 209  Q
    ||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||   | || ||||||||||||||||||    
T  47235906 gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgtttttttttaagtctgttttaggtggtgatgt 47235998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 53248005 - 53248200
Alignment:
Q  15 ttggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagtttt-atttt 113  Q
    ||||||||||||||||||||| ||| |  ||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||    
T  53248005 ttggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagtttttatttt 53248104  T
Q  114 gagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    ||| ||||||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  53248105 gagagtgttctttgtgggtgagtagtgacgatgggcggtggtggttaccgtgtttacagtgcttgtttttttggagtctgttttaggtggtgatgt 53248200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 45163962 - 45164154
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||| ||| ||||||| ||||| |||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||    
T  45163962 ggaggtcacgaagtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggcttagcttgggtgttggggtctaggagttttattttgag 45164061  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||| ||||||||||| ||||||||||||||| || || || ||||||||||| ||||||||| || ||||| | ||||||||||||||||    
T  45164062 ggtgttatttgtaggtgattagtgacgatgggcggtgatgaataccgtgtttacaatgcttgtttctttggagtctattttaggtggtgatgt 45164154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 34475730 - 34475539
Alignment:
Q  15 ttggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttg 114  Q
    ||||||||||||||||||||| |||||  ||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || |||||||  |||     
T  34475730 ttggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaatgtgactcagcttaggtgttggggtatgagagtttt--ttta 34475633  T
Q  115 agggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  34475632 agggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacattgcttgtttttt-ggagtctgttttaggtggtgatgt 34475539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 20611890 - 20612054
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| |||||  ||| ||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| ||||||||||| ||||    
T  20611890 ggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtgactcagcttgggtgttggg-tctaggagttttattctgag 20611988  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttt 182  Q
    |||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  20611989 ggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgcttgtttt 20612054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 2392480 - 2392313
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| |  |||||| | |||||||||||||||||||||||||||| ||||||||||||||      
T  2392480 ggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgta 2392381  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    |||||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  2392380 ggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttttttttt 2392313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 2394244 - 2394077
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| |  |||||| | |||||||||||||||||||||||||||| ||||||||||||||      
T  2394244 ggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgta 2394145  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    |||||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  2394144 ggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttttttttt 2394077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 31482989 - 31483180
Alignment:
Q  15 ttggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttg 114  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||||     
T  31482989 ttggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttaggtgttggggtttgagagtttt-tttta 31483087  T
Q  115 agggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||||| ||| |||||||||||||  |  |||||||| || |||||||| ||||  |||||| ||||||||||||||| ||||||||    
T  31483088 agggtgttctttgtgggttagtagtgacgatgaacagtggtggataccatgtttacattgct--tttttttggagtttgttttaggcggtgatgt 31483180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 43012484 - 43012678
Alignment:
Q  18 gaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagg 117  Q
    |||||||||||||| |||  || | |||| || |||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  43012484 gaggtcgcgaggtt-gtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttaatttgagg 43012582  T
Q  118 gtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttt-tg--ggagtttgttttaggtggtgatgtc 210  Q
    |||||||||| |||||||||||| |||||| ||  ||||||| ||||||||||| ||||||||||| ||  ||||| |||||||| ||||||||||    
T  43012583 gtgttctttggaggtgagtagtggcgatggacgggggtggataccgtgtttacaatgcttgtttttgtgaaggagtctgttttagatggtgatgtc 43012678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 17551064 - 17551226
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||| |     ||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||    
T  17551064 ggaggtcgcgaggtttgtgatagctgcatgat-----ggttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagttttattttgag 17551158  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    |||||||||||| ||||||||||||||||||||| |||||| | || |||||  | ||||||||||||    
T  17551159 ggtgttctttgtcggtgagtagtgacgatgggcggtggtggttaccttgtttgtaatgcttgtttttt 17551226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 19176645 - 19176806
Alignment:
Q  51 ttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgacgatgggcg 150  Q
    |||||| | ||||||||||  |||||||||||||||||||| |||||||||| |||||||||||||||||||||||   ||||||||||||||||||  |    
T  19176645 ttcggtcaggtgctcttcgtaatgtggctcagcttgggtgtcggggtctgggtgttttattttgagggtgttctttaggggtgagtagtgacgatggatg 19176744  T
Q  151 atggtggatgccgtgtttacagtgcttg---ttttttgggagtttgttttaggtggtgatgt 209  Q
     |||||||| | |||||||| |||||||   |||||| ||||| ||||||||||||| ||||    
T  19176745 gtggtggatactgtgtttactgtgcttgttttttttttggagtctgttttaggtggttatgt 19176806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 9583997 - 9583862
Alignment:
Q  48 tccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgacgatgg 147  Q
    ||||||||| | | |||||||||  |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||||| |    
T  9583997 tccttcggtcaggcgctcttcgaattgtggctctgcttgggttttggggtctgggagttttattttgaggatgttctttg-cggtgagtagtgacgatag 9583899  T
Q  148 gcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    ||| ||||||||  ||||||||| |||||||||||||    
T  9583898 gcggtggtggatatcgtgtttacggtgcttgtttttt 9583862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 30352358 - 30352248
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttaca 171  Q
    |||||||||||||||||||||||||||| |||||||| |||  |||||||||||||| | ||||||||||||||||| | |||||||| |||||||||||    
T  30352358 atgtggctcagcttgggtgttggggtctcggagtttttttt--agggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgtttaca 30352261  T
Q  172 gtgcttgtttttt 184  Q
    || ||||||||||    
T  30352260 gtacttgtttttt 30352248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 23328290 - 23328160
Alignment:
Q  51 ttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag-ggtgttctttgtaggtgagtagtgacgatgggc 149  Q
    |||||||| | ||| ||||| ||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||  |||||||||||||||||||     
T  23328290 ttcggttaggagcttttcga-atgtggctcagcttgggtgttgaagtctgggagttttattttgagtggtgttctttgggggtgagtagtgacgatgggt 23328192  T
Q  150 gatggtggatgccgtgtttacagtgcttgttt 181  Q
    | | ||||||   ||| |||||||| ||||||    
T  23328191 ggttgtggatattgtgcttacagtgtttgttt 23328160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 174
Target Start/End: Complemental strand, 40023525 - 40023389
Alignment:
Q  38 agctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtaggtgagt 136  Q
    |||| |||| || |||||||| | ||| ||||| ||||||||||||| ||||||||  |||||||||||||||||||| ||| |||||||   | |||||    
T  40023525 agctgcatgttcattcggttaggagcttttcga-atgtggctcagctagggtgttgtagtctgggagttttattttgaggggcgttcttttgggatgagt 40023427  T
Q  137 agtgacgatgggcgatggtggatgccgtgtttacagtg 174  Q
    |||||||||||  | | |||||| ||||||||||||||    
T  40023426 agtgacgatggatggttgtggataccgtgtttacagtg 40023389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 7105019 - 7105113
Alignment:
Q  89 tgttggggtctgggagttttattttgaggg-tgtt-ctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttt 182  Q
    |||| ||| |||||||||||||||| |||| |||| |||||  ||||||||||||||||||| | |||||||| | || |||| ||||||||||||    
T  7105019 tgttagggactgggagttttattttaaggggtgtttctttgg-ggtgagtagtgacgatgggtggtggtggatactgtttttatagtgcttgtttt 7105113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 45398904 - 45399060
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    |||||||| |||||| |||  |||| |||| || |||||||| | ||| ||||| ||||||| || ||| |||||||  || |||||||| ||||||| |    
T  45398904 ggaggtcgagaggtt-gtggaagctgcatgttcattcggttatgagcttttcga-atgtggcgcaacttaggtgttgaagtttgggagttctattttgtg 45399001  T
Q  117 gg-tgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtg 174  Q
    || ||||| |||  ||||||||||||||||||  ||| ||||||   ||||||||||||    
T  45399002 gggtgttcgttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtg 45399060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 10541970 - 10542127
Alignment:
Q  48 tccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgacgatgg 147  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||    
T  10541970 tccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacgatgg 10542069  T
Q  148 gcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtg 205  Q
    ||| |||||||| |||| |||| |||||||||||||| ||||||||||||||||||||    
T  10542070 gcggtggtggataccgtatttaaagtgcttgtttttttggagtttgttttaggtggtg 10542127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 3117600 - 3117794
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||| | |||| ||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||  ||    
T  3117600 ggaggtcgcgaggtttgtgatagttgcatgatccttcgattatgtgctcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttatag 3117699  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttggg--agtttgttttaggtggtgatgt 209  Q
    |||||||||||| ||| ||||| ||||||| ||| |||||| | ||||||||||||||||||||||||     ||||||||||||||||||||||    
T  3117700 ggtgttctttgtgggtaagtagagacgatgagcggtggtggttaccgtgtttacagtgcttgtttttttttttagtttgttttaggtggtgatgt 3117794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 14663231 - 14663380
Alignment:
Q  64 tcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccg 163  Q
    ||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||   |    
T  14663231 tcttcgaaatgtggctcggcttggatgttggggtttgggagttttattttgaggatgttctttgcgggtgagtagtgacgatgggcggtggtggatattg 14663330  T
Q  164 tgtttacagtgctt----gttttttgggagtttgttttaggtggtgatgt 209  Q
    ||||||||||||||     |||||| ||||| ||||||||||||||||||    
T  14663331 tgtttacagtgctttttgttttttttggagtctgttttaggtggtgatgt 14663380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 3254209 - 3254257
Alignment:
Q  161 ccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  3254209 ccgtgtttacggtgcttgtttttttggagtctgttttaggtggtgatgt 3254257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 8255134 - 8255327
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| | || ||| || |||| ||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||    
T  8255134 ggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgag 8255233  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttt-ttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||| |||||||||||||||||||   |||||||| | |||||||||||||||||||| || ||||| ||||||||||||||||||    
T  8255234 ggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgttttatttggagtctgttttaggtggtgatgt 8255327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 8268552 - 8268745
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| | || ||| || |||| ||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||    
T  8268552 ggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgag 8268651  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttt-ttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||| |||||||||||||||||||   |||||||| | |||||||||||||||||||| || ||||| ||||||||||||||||||    
T  8268652 ggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgttttatttggagtctgttttaggtggtgatgt 8268745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 30167538 - 30167346
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    |||||||||||||||| || ||||| ||||  |||||||||||| ||||||||| ||||||| || ||||||||||||||| ||||||||||||||||||    
T  30167538 ggaggtcgcgaggtttatgatagctgcatgacccttcggttaagcgctcttcgaaatgtggcccaacttgggtgttggggtatgggagttttattttgag 30167439  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttg-ttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||| ||||||| |||||| | |||| |||||||| |||||||||||||||||| |||||| ||||| |||||||||  |||||||    
T  30167438 ggtgttctttgtgggtgagtggtgacg-ttggcggtggtggataccgtgtttacagtgcttgatttttttggagtctgttttaggatgtgatgt 30167346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 30964548 - 30964737
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||||||||||||| ||||| |||| || |||||||| ||||||||||| ||||||| | ||||||||| |     |||||||||||||||||||    
T  30964548 ggaggtcgcgaggtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatgtggccctgcttgggtggta----ctgggagttttattttgag 30964643  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttg-ttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||||||||| |||||||||||| |||||||| ||||| ||  ||| |||||||||| || |||||| ||||| ||||||||||||||||||    
T  30964644 ggtgttctttgtgggtgagtagtgatgatgggcggtggtgaatatcgtatttacagtgcgtgatttttttggagtctgttttaggtggtgatgt 30964737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 8706061 - 8705951
Alignment:
Q  74 gtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagt 173  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||| |||||||||||||||  |||||||| | |||||||||||    
T  8706061 gtggctcagcttgggtgttggggtctaagagttttattttgagggtgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttacagt 8705962  T
Q  174 gcttgtttttt 184  Q
    |||||||||||    
T  8705961 gcttgtttttt 8705951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 20464786 - 20464889
Alignment:
Q  106 tttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtg 205  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| |||||||| |||||||||||| | ||||||||| | ||||||||||||||||||    
T  20464786 tttattttgagggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgtttttttgaagtttgttttaggtggtg 20464885  T
Q  206 atgt 209  Q
    ||||    
T  20464886 atgt 20464889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 4305833 - 4305951
Alignment:
Q  18 gaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagg 117  Q
    |||||||| ||||||||| || || |||| ||||||||| | ||||||||||| |||||||||| ||||||| || |||| ||||||||||||||| |||    
T  4305833 gaggtcgcaaggtttgtgataactgcatgatccttcggtgaggtgctcttcga-atgtggctcaacttgggtatttgggtttgggagttttattttcagg 4305931  T
Q  118 gtgttctttgtaggtgagta 137  Q
    ||| ||||||| ||||||||    
T  4305932 gtgatctttgtgggtgagta 4305951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 31050634 - 31050478
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    |||||||| |||||| |||  |||| |||| || |||||||| | ||| |||||| ||||||| |||||||||||||  ||||||  |||||||||||||    
T  31050634 ggaggtcgagaggtt-gtggaagctgcatgttcattcggttaggagcttttcgat-tgtggctaagcttgggtgttgaagtctggctgttttattttgag 31050537  T
Q  117 gg-tgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtg 174  Q
    || ||||| |||  ||||||||||||||||||  |||||||||||  ||||||||||||    
T  31050536 gggtgttccttgggggtgagtagtgacgatggatgatggtggatgttgtgtttacagtg 31050478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 35341258 - 35341148
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgaggg-tgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttac 170  Q
    ||||||||||| |||| |||||  || |||||||||||||||||||| |||||| ||  ||||||||||||||||||| | | | |||| | ||||||||    
T  35341258 atgtggctcagtttgg-tgttgaagtttgggagttttattttgaggggtgttctctgg-ggtgagtagtgacgatgggtggttgcggatactgtgtttac 35341161  T
Q  171 agtgcttgttttt 183  Q
    |||| ||||||||    
T  35341160 agtgtttgttttt 35341148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 2825946 - 2826020
Alignment:
Q  74 gtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtaggtgagtagtgacgatggg 148  Q
    |||| |||| ||||||||||  || ||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  2825946 gtggttcagtttgggtgttgaagtttgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatggg 2826020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 19673259 - 19673332
Alignment:
Q  72 atgtggctcagcttgggtgttggggtctgggagttttattttgagg-gtgttctttgtaggtgagtagtgacga 144  Q
    |||||||| | ||| ||||||| || ||| |||||| ||||||||| ||||||||||  |||||||||||||||    
T  19673259 atgtggctaaactttggtgttgaggactgagagtttaattttgaggagtgttctttgggggtgagtagtgacga 19673332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 36689643 - 36689586
Alignment:
Q  152 tggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||| ||| |||||||||||  ||||||||||| ||||| |||||||| |||||||||    
T  36689643 tggttgataccgtgtttacaaggcttgtttttttggagtatgttttagatggtgatgt 36689586  T

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Target: scaffold0343 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 5813 - 6004
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||||| ||||||||| ||||||| || ||||||||||| ||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  5813 ggaggtcgcaaggtttgtgatagctacttgatccttcggttaggtgctcttcgtaatgtggctcagcttgggtgttgggatctgggagttttattttgag 5912  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    |||||| ||||| |||||||||||| |||||| | |||||||| || ||||||| ||||||||||||| | ||| | ||||||||||||||||    
T  5913 ggtgttttttgtgggtgagtagtgatgatgggaggtggtggataccatgtttacggtgcttgtttttttgaagtct-ttttaggtggtgatgt 6004  T

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Target: scaffold0068 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 35746 - 35558
Alignment:
Q  17 ggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgag 116  Q
    ||||||| |||| |||||| ||||| |||| ||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||  |||| ||    
T  35746 ggaggtcacgagatttgtgatagctgcatgatccatcggttaggtgctcttcgaaatgaggctcagcttgggtgttggggtgtgggagttt--tttttag 35649  T
Q  117 ggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
     |||||||| | |||||||| ||||||||||||  |||||||| | |||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  35648 agtgttcttagcaggtgagt-gtgacgatgggcagtggtggatactgtgtttacagtgcttgtttttt-ggagtctgttttaggtgatgatgt 35558  T

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Target: scaffold0434 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 2497 - 2454
Alignment:
Q  166 tttacagtgcttgttttttgggagtttgttttaggtggtgatgt 209  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||    
T  2497 tttacggtgcttgtttttttggagtttgttttaggtggtgatgt 2454  T

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Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 48560 - 48609
Alignment:
Q  135 gtagtgacgatgggcgatggtggatgccgtgtttacagtgcttgtttttt 184  Q
    ||||||||||||||| |||||| || ||||||| ||||||||||||||||    
T  48560 gtagtgacgatgggctatggtgaataccgtgttaacagtgcttgtttttt 48609  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 19113 - 19177
Alignment:
Q  106 tttattttgagggtgttctttgtaggtgagtagtgacgatgggcgatggtggatgccgtgtttacagt 173  Q
    |||||||||||||||||| |||| ||||||||||   |||| ||| |||| ||| |||||||||||||    
T  19113 tttattttgagggtgttcattgtgggtgagtagt---gatgagcggtggtagataccgtgtttacagt 19177  T

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