View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_high_3 (Length: 464)
Name: NF9369_high_3
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 24 - 397
Target Start/End: Original strand, 38912282 - 38912656
Alignment:
| Q |
24 |
atacttggtaggcacagaaaatatttcattgacaaggacataaattgggaatgaagattgagttcatactccagaaaataatatacaatggatgagtgaa |
123 |
Q |
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| T |
38912282 |
atacttgctaggcacataaaatatttcattgacaaggacataaattgggaatgaagattgagttcatactccagaaaataatatacaatggatgagtgaa |
38912381 |
T |
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| Q |
124 |
ggtttattcaacattggatgcctgaagtctacgttgatacgactatatctttgacttgtcttgtaactattgttccaattattactgctnnnnnnn-tgt |
222 |
Q |
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| T |
38912382 |
ggtttattcaacattggatgcctgaagtctacgttgatacgactatatctttgacttgtcttgtaactattgtaccaattattactgctaaaaaaaatgt |
38912481 |
T |
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| Q |
223 |
ctctaattcgtgcattcctctattcgttaatgttcaggcaaaagcaaaatctacttgttcatctaaaagaagaatataatatagtcatagaaataagggt |
322 |
Q |
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| T |
38912482 |
ctctaattcgtgcattcctctattcgttaatgttcaggcaaaagcaaaatctacttgttcatctaaaagaagaatataatatagtcatagaaataagggt |
38912581 |
T |
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| Q |
323 |
taccgacttaatcaatacaggtatatataggacaagcttcattctttgacgccttttagacccggtcttaccaac |
397 |
Q |
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| T |
38912582 |
taccgacttaatcaatacaggtatatataggacaagcttcattctttgacgccttttagacccggtcttaccaac |
38912656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 38912677 - 38912717
Alignment:
| Q |
406 |
ttaaacgatcaaattcgttcgtgcacttgtaaagttctcaa |
446 |
Q |
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| T |
38912677 |
ttaaacaatcaaattcgttcgtgcacttgtaaagttctcaa |
38912717 |
T |
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