View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_2 (Length: 539)
Name: NF9369_low_2
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 7 - 521
Target Start/End: Complemental strand, 38743777 - 38743271
Alignment:
| Q |
7 |
caaaatctcaagcaactatcaccagacctacccaattaaagnnnnnnngagactagtgttccaatataatacaaaaatcataagaatacaatgcagcagt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
38743777 |
caaaatctcaagcaactatcaccagacctacccaattcaagaaaaaaagag-ctagtgttccaatataatacaaaaatcataagaatacaatgtagtagt |
38743679 |
T |
|
| Q |
107 |
aaggtacaaatactaaagccacaaaagactaaggttatagccgatagtggataagctatctgatagctcatagtagaaaaacctaataaaattgaatttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38743678 |
aaggtacaaatactaaagccacaaaagactaaggttatagtcgatagtggataagctatctgatag-------tagaaaaacctaataaaattgaatttg |
38743586 |
T |
|
| Q |
207 |
tagggttttaacttaagttataaactactataaactcaaacgtttgcattgtcatatagagatctatcttcaatacattatatccatctccccataaaaa |
306 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38743585 |
tagggttttaacttaagctataaactactataaactcaaacgtttgcattgtcatatagagatctatcttcaatacattatatccatctccccataaaaa |
38743486 |
T |
|
| Q |
307 |
caattttgttcattcaattacacttgatagatttgagagaatcatattttccaatcgccattattgtacgttgatatcatatttgagtgtttgccacaca |
406 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38743485 |
caatattgttcattcaattacacttgatagatttgagagaatcatattttccaatcgccattattgtacgttgatatcatatttgtgtgtttgccacaca |
38743386 |
T |
|
| Q |
407 |
ctataaacttccagagagttataccaaaagagctagtggagcaggaatcccaataaagttttccaacaaatttgtgctaaagtataaattttaaaaggta |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38743385 |
ctataaacttccagagagttataccaaaagagctagtggagcaggaatcccaatacagttttccaacaaatttgtgctaaagtataaattttaaaaggta |
38743286 |
T |
|
| Q |
507 |
ctactgatgcatggt |
521 |
Q |
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||||||||||||||| |
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| T |
38743285 |
ctactgatgcatggt |
38743271 |
T |
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