View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_22 (Length: 385)

Name: NF9369_low_22
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_22
NF9369_low_22
[»] chr6 (11 HSPs)
chr6 (14-204)||(32538605-32538796)
chr6 (204-370)||(12260444-12260610)
chr6 (204-370)||(20745583-20745751)
chr6 (205-370)||(27129773-27129939)
chr6 (219-328)||(12261426-12261535)
chr6 (219-327)||(27128857-27128965)
chr6 (204-263)||(29435059-29435118)
chr6 (209-263)||(12586853-12586907)
chr6 (298-348)||(24604965-24605015)
chr6 (275-328)||(10998793-10998846)
chr6 (203-259)||(21611912-21611968)
[»] chr5 (21 HSPs)
chr5 (205-370)||(23083473-23083639)
chr5 (209-370)||(6793770-6793931)
chr5 (209-328)||(30645663-30645782)
chr5 (225-328)||(24041757-24041860)
chr5 (219-328)||(24042615-24042724)
chr5 (219-328)||(28905393-28905502)
chr5 (219-328)||(28941788-28941897)
chr5 (219-328)||(37191606-37191715)
chr5 (204-328)||(39548536-39548660)
chr5 (204-327)||(19798657-19798780)
chr5 (219-328)||(37192408-37192517)
chr5 (225-328)||(13823719-13823822)
chr5 (209-328)||(14347404-14347521)
chr5 (237-328)||(38384899-38384990)
chr5 (219-318)||(38385747-38385846)
chr5 (195-263)||(30112711-30112779)
chr5 (310-349)||(4821712-4821751)
chr5 (274-328)||(23082606-23082660)
chr5 (219-263)||(28904825-28904869)
chr5 (219-263)||(28941220-28941264)
chr5 (219-263)||(39547971-39548015)
[»] chr4 (26 HSPs)
chr4 (204-370)||(40681395-40681561)
chr4 (205-370)||(9086286-9086457)
chr4 (219-328)||(50282868-50282975)
chr4 (219-328)||(53596085-53596194)
chr4 (204-328)||(2734795-2734919)
chr4 (224-328)||(26281186-26281290)
chr4 (209-259)||(701636-701686)
chr4 (209-259)||(769935-769985)
chr4 (298-348)||(33626109-33626159)
chr4 (274-328)||(44183742-44183796)
chr4 (204-259)||(757504-757559)
chr4 (204-323)||(43629177-43629296)
chr4 (209-259)||(702655-702705)
chr4 (209-259)||(756490-756540)
chr4 (209-259)||(770954-771004)
chr4 (274-328)||(11816690-11816744)
chr4 (209-259)||(35060458-35060508)
chr4 (294-348)||(42779607-42779661)
chr4 (224-318)||(44182580-44182674)
chr4 (298-348)||(45911819-45911869)
chr4 (298-348)||(46621172-46621222)
chr4 (219-265)||(51399524-51399570)
chr4 (198-263)||(41845493-41845558)
chr4 (237-318)||(45044399-45044480)
chr4 (219-263)||(2735422-2735466)
chr4 (300-348)||(29864420-29864468)
[»] chr8 (13 HSPs)
chr8 (209-370)||(13463042-13463203)
chr8 (219-328)||(22594331-22594440)
chr8 (219-328)||(44553141-44553250)
chr8 (204-316)||(36182170-36182281)
chr8 (206-261)||(16905255-16905310)
chr8 (209-263)||(9317028-9317082)
chr8 (298-348)||(18914496-18914546)
chr8 (205-263)||(30864162-30864220)
chr8 (209-259)||(39270799-39270849)
chr8 (209-259)||(45378553-45378603)
chr8 (204-265)||(10134606-10134667)
chr8 (218-263)||(11174169-11174214)
chr8 (198-259)||(44632698-44632759)
[»] chr7 (15 HSPs)
chr7 (209-370)||(30766577-30766739)
chr7 (192-370)||(17279336-17279513)
chr7 (209-328)||(25445015-25445133)
chr7 (204-318)||(17236062-17236176)
chr7 (219-328)||(17278412-17278521)
chr7 (219-328)||(30765681-30765790)
chr7 (278-343)||(45087137-45087202)
chr7 (205-265)||(472874-472934)
chr7 (199-263)||(36720994-36721058)
chr7 (204-263)||(32072296-32072355)
chr7 (209-259)||(26024890-26024940)
chr7 (274-328)||(42753981-42754035)
chr7 (209-263)||(42754539-42754593)
chr7 (303-351)||(10990511-10990559)
chr7 (274-318)||(16955998-16956042)
[»] chr2 (17 HSPs)
chr2 (206-370)||(40468046-40468211)
chr2 (209-370)||(19297530-19297692)
chr2 (204-370)||(20686566-20686737)
chr2 (204-370)||(28190379-28190548)
chr2 (209-370)||(8028969-8029130)
chr2 (209-328)||(10709300-10709419)
chr2 (206-327)||(16329745-16329866)
chr2 (214-328)||(11131120-11131234)
chr2 (284-328)||(29519236-29519280)
chr2 (205-328)||(8885657-8885780)
chr2 (274-328)||(29519982-29520036)
chr2 (219-328)||(12602533-12602642)
chr2 (237-328)||(8029945-8030036)
chr2 (274-323)||(18950803-18950852)
chr2 (275-328)||(28189516-28189569)
chr2 (279-332)||(35738436-35738489)
chr2 (279-348)||(39912871-39912940)
[»] chr3 (20 HSPs)
chr3 (204-370)||(32304230-32304396)
chr3 (209-370)||(34819514-34819675)
chr3 (209-370)||(17509467-17509630)
chr3 (209-370)||(42540166-42540328)
chr3 (224-328)||(54831873-54831977)
chr3 (274-328)||(34817399-34817453)
chr3 (219-328)||(32305206-32305315)
chr3 (237-328)||(42541136-42541227)
chr3 (274-328)||(17514645-17514699)
chr3 (209-263)||(52857286-52857340)
chr3 (298-348)||(54081374-54081424)
chr3 (295-348)||(7743010-7743063)
chr3 (204-265)||(13301955-13302016)
chr3 (204-265)||(13312611-13312672)
chr3 (282-343)||(33772066-33772127)
chr3 (209-265)||(4953127-4953183)
chr3 (304-348)||(17273874-17273918)
chr3 (209-265)||(43464815-43464871)
chr3 (219-263)||(52255532-52255576)
chr3 (219-263)||(53228215-53228259)
[»] chr1 (26 HSPs)
chr1 (204-370)||(36143029-36143195)
chr1 (209-370)||(47113007-47113169)
chr1 (209-370)||(35123092-35123252)
chr1 (209-316)||(49964093-49964203)
chr1 (275-369)||(49653619-49653714)
chr1 (219-328)||(16659840-16659949)
chr1 (219-328)||(29021595-29021704)
chr1 (209-328)||(24326585-24326704)
chr1 (237-328)||(29022485-29022576)
chr1 (209-259)||(51597964-51598014)
chr1 (204-328)||(5805913-5806038)
chr1 (219-328)||(51241737-51241846)
chr1 (224-328)||(967909-968013)
chr1 (209-329)||(5804696-5804816)
chr1 (277-348)||(2939706-2939777)
chr1 (204-263)||(6328331-6328390)
chr1 (237-328)||(24332250-24332341)
chr1 (237-328)||(49652429-49652520)
chr1 (298-344)||(28970510-28970556)
chr1 (274-328)||(36142178-36142232)
chr1 (279-348)||(14118603-14118671)
chr1 (275-328)||(52751499-52751552)
chr1 (219-263)||(16659272-16659316)
chr1 (209-265)||(35814395-35814451)
chr1 (300-348)||(37199025-37199073)
chr1 (288-328)||(47112176-47112216)
[»] scaffold0202 (2 HSPs)
scaffold0202 (209-370)||(21235-21392)
scaffold0202 (274-328)||(22141-22195)
[»] scaffold0192 (1 HSPs)
scaffold0192 (219-328)||(14641-14748)
[»] scaffold0002 (2 HSPs)
scaffold0002 (219-263)||(428983-429027)
scaffold0002 (204-253)||(429159-429208)
[»] scaffold0042 (1 HSPs)
scaffold0042 (205-265)||(90159-90219)
[»] scaffold0029 (2 HSPs)
scaffold0029 (209-348)||(71745-71884)
scaffold0029 (279-343)||(70743-70807)
[»] scaffold0220 (1 HSPs)
scaffold0220 (209-265)||(25966-26022)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 32538605 - 32538796
Alignment:
Q  14 agaagcggtcaattctactaagttttaacatttttacatgtctaaactcgcgttttgaatatgaa-gtcttcatagattaaacgtatcatttcatgattc 112  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32538605 agaagcggtcaattctattaagttttaacatttttacatatctaaactcgcgttttgaatatgaaagtcttcatagattaaacgtatcatttcatgattc 32538704  T
Q  113 tcatctaagccttctttaatggagtaagatgatattgatcatgaaaactgttattagacatcaaaacgctcaatatactacttataaaaact 204  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32538705 tcatctaagccttctttagtggagtaagatgatattgatcatgaaaactgttattagacatcaaaacgctcaatatactacttatgaaaact 32538796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 12260444 - 12260610
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    |||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  12260444 taggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctctg 12260543  T
Q  304 ttacatgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12260544 ttacatgttttggtcccttccgttagttttaataaaaaaacgttaactgctatccacgtgtcatttt 12260610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 20745583 - 20745751
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    |||| |||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||        |||||||||||||||||||||||||||| |    
T  20745583 taggcttaattactcttttcgtcccttaagttattatttggtatcgctttgatcccttaagtaaaaaaaagattgttttggtactttatctttatctccg 20745682  T
Q  304 ttacatgttttggtctcttccgttagttttaatc--aaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||| |||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  20745683 ttacatgtgttggtcccttccattagttttaatcaaaaaaaacgttaactgctatccacgtgtcatttt 20745751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 205 - 370
Target Start/End: Complemental strand, 27129939 - 27129773
Alignment:
Q  205 aggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnn-gattgttttggtactttatctttatctctg 303  Q
    ||||||||||| | ||||||||||||||||||||||||| |||| ||   ||||||||| |         |||||||||| ||||||||||||||||| |    
T  27129939 aggtttaattggtcttttcgtcccttaagttattatttggtatcactcaagtcccttaaataaataaaaagattgttttgatactttatctttatctccg 27129840  T
Q  304 ttacatgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27129839 ttacatgttttggtcccttccattagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 27129773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 12261535 - 12261426
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||||| |  ||||||| |||| |||||||||||||| |        ||||||||  |||||||||||| ||||| ||||| ||||||||||    
T  12261535 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtc 12261436  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  12261435 ccttccgtta 12261426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 27128857 - 27128965
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||||| |  ||||||| |||| |||||||||||||| |        ||||||||  |||||||||||| ||||||||||| ||||||||||    
T  27128857 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctctgttacctgttttggtc 27128956  T
Q  319 tcttccgtt 327  Q
      |||||||    
T  27128957 cattccgtt 27128965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 29435059 - 29435118
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||||||||||||| |||| |||||||||||| ||||||  |||| |||| |||||||||    
T  29435059 taggtttaattgctctttttgtcccttaagtttttatttagtatcactttagtcccttaa 29435118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 12586907 - 12586853
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| |||| ||||||||||||||||  ||||||| |||| ||||||||||||||    
T  12586907 ttaaatgctcttttcgtcccttaagtatttatttggtatcactttggtcccttaa 12586853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 24604965 - 24605015
Alignment:
Q  298 tctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    ||||||||||| |||||||||  ||||||||||||||||  ||||||||||    
T  24604965 tctctgttacacgttttggtcatttccgttagttttaattcaaaaacgtta 24605015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 10998793 - 10998846
Alignment:
Q  275 attgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    |||||||  ||||||||| |||||||| ||||| ||||||||||||||| ||||    
T  10998793 attgtttgagtactttatttttatctccgttacctgttttggtctcttctgtta 10998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 21611912 - 21611968
Alignment:
Q  203 ctaggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||| ||||||||| |||||||||||||| | ||| |||| ||||| |||||||||    
T  21611912 ctaggcttaattgctattttcgtcccttaactaattttttggtatcgatttggtccc 21611968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 205 - 370
Target Start/End: Complemental strand, 23083639 - 23083473
Alignment:
Q  205 aggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgt 304  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  23083639 aggtttaattgctcttttcgtcccttaagttattatttggtatcgttttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctctgt 23083540  T
Q  305 tacatgttttggtctcttccgttagttttaatcaa-aaaacgttaactgctatccacgtgtcatttt 370  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23083539 tacatgttttggtctcttccgttagttttaatcaaaaaaacgttaactgctatccacgtgtcatttt 23083473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 6793770 - 6793931
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||||| |||| |||||||||||||||||||| |||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  6793770 ttaattgctctttttgtcccttaagttattatttggtatcactttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctctgttaca 6793869  T
Q  309 tgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    || ||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||||||    
T  6793870 tggtttggtcccttccgttagttttactaaaaaaacgttaattgctatccacgtgtcatttt 6793931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 328
Target Start/End: Complemental strand, 30645782 - 30645663
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    |||| |||| |||| |||||||||||  ||||||| ||||||||||||||||||| |        ||||||||  ||||||||||||||||||||||||     
T  30645782 ttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttacc 30645683  T
Q  309 tgttttggtctcttccgtta 328  Q
    |||||||||| |||| ||||    
T  30645682 tgttttggtcccttctgtta 30645663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 328
Target Start/End: Original strand, 24041757 - 24041860
Alignment:
Q  225 tcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttcc 324  Q
    ||||||||||  ||||||||||||||||||||||||||| |        ||||||||  ||| |||||||||||||| ||||| |||||||||| |||||    
T  24041757 tcccttaagtatttatttgatatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggtcccttcc 24041856  T
Q  325 gtta 328  Q
    ||||    
T  24041857 gtta 24041860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 24042724 - 24042615
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||| |        ||||||||  ||| |||||||||||||| ||||| ||||||||||    
T  24042724 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggtc 24042625  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  24042624 ccttccgtta 24042615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 28905502 - 28905393
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||| |         |||||||  |||||||||||||||||||||||| ||||||||||    
T  28905502 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaaaattgtttgagtactttatctttatctctgttacctgttttggtc 28905403  T
Q  319 tcttccgtta 328  Q
     |||| ||||    
T  28905402 ccttctgtta 28905393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 28941897 - 28941788
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||| |         |||||||  |||||||||||||||||||||||| ||||||||||    
T  28941897 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaaaattgtttgagtactttatctttatctctgttacctgttttggtc 28941798  T
Q  319 tcttccgtta 328  Q
     |||| ||||    
T  28941797 ccttctgtta 28941788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 37191606 - 37191715
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||||| |  ||||||| ||||||||||||||||||| |        ||||||||  ||||||||||||||||||| |||| ||||||||||    
T  37191606 ttttggtcccttaactgtttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctattacctgttttggtc 37191705  T
Q  319 tcttccgtta 328  Q
    ||||| ||||    
T  37191706 tcttctgtta 37191715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 39548660 - 39548536
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    |||| |||| |||| |||| |||||||||||  ||||||  ||||| ||||||||||||| |        ||||||||  |||||||||||| |||||||    
T  39548660 taggcttaaatgctcttttggtcccttaagtatttattttgtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctctg 39548561  T
Q  304 ttacatgttttggtctcttccgtta 328  Q
    |||| ||||||||||||||| ||||    
T  39548560 ttacctgttttggtctcttctgtta 39548536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 327
Target Start/End: Complemental strand, 19798780 - 19798657
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    |||| |||| |||| |||| |||||||||||  ||||||| |||| |||||||||||||| |        ||||||||  ||||||||||||||||||||    
T  19798780 taggcttaaatgctcttttggtcccttaagtatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctg 19798681  T
Q  304 ttacatgttttggtctcttccgtt 327  Q
    |||  ||||| |||| ||||||||    
T  19798680 ttatctgtttcggtcccttccgtt 19798657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 37192517 - 37192408
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||||| |  ||||||| ||||||||||||||||||| |        |||| |||  ||||||||| |||||||||||||| ||||||||||    
T  37192517 ttttggtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtactttatatttatctctgttacctgttttggtc 37192418  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  37192417 ccttccgtta 37192408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 328
Target Start/End: Original strand, 13823719 - 13823822
Alignment:
Q  225 tcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttcc 324  Q
    ||||||||||  ||||||| ||| ||||||||||||||| |        ||||||||  ||| |||||||||||||| ||||| |||||||||| |||||    
T  13823719 tcccttaagtatttatttggtattgctttggtcccttaactaaaaaaaagattgtttaagtattttatctttatctccgttacctgttttggtcccttcc 13823818  T
Q  325 gtta 328  Q
    ||||    
T  13823819 gtta 13823822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 328
Target Start/End: Original strand, 14347404 - 14347521
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    |||| |||| |||| |||||||||||  ||||||| ||||||||||||||||||| |         |||||||  |||||||||||||||||| |||||     
T  14347404 ttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaa--attgtttgagtactttatctttatctccgttacc 14347501  T
Q  309 tgttttggtctcttccgtta 328  Q
    |||||||| | |||||||||    
T  14347502 tgttttggccccttccgtta 14347521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 38384899 - 38384990
Alignment:
Q  237 ttatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||| ||||||||||||||||||| |        ||||||||  |||||||||||||||||| | ||| |||||||||| |||||||||    
T  38384899 ttatttggtatcgctttggtcccttaattaaaaaaaagattgtttgagtactttatctttatctccgctacctgttttggtcccttccgtta 38384990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 38385846 - 38385747
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||||| |  ||||||||||||||||||||||||||| |        ||||||||  |||||||||||||||||| ||||| | ||||||||    
T  38385846 ttttggtcccttaactatttatttgatatcgctttggtcccttaactaaaataaagattgtttgagtactttatctttatctccgttacctattttggtc 38385747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 30112779 - 30112711
Alignment:
Q  195 tataaaaactaggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    ||||||||  ||| ||||||||| |||| |||||||||||  ||| ||| |||||||||||||||||||    
T  30112779 tataaaaagaaggcttaattgctcttttagtcccttaagtatttaattggtatcgctttggtcccttaa 30112711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 4821712 - 4821751
Alignment:
Q  310 gttttggtctcttccgttagttttaatcaaaaaacgttaa 349  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  4821712 gttttggtctcttctgttagttttaataaaaaaacgttaa 4821751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 23082606 - 23082660
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||||  |||||||||||| ||||| ||||| |||||||||| |||||||||    
T  23082606 gattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 23082660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 28904869 - 28904825
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    ||||||||||||||||  ||||||| |||| ||||||||||||||    
T  28904869 ttttcgtcccttaagtatttatttggtatcactttggtcccttaa 28904825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 28941264 - 28941220
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    ||||||||||||||||  ||||||| |||| ||||||||||||||    
T  28941264 ttttcgtcccttaagtatttatttggtatcactttggtcccttaa 28941220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 39548015 - 39547971
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    ||||||||||||||||  ||||||| |||| ||||||||||||||    
T  39548015 ttttcgtcccttaagtatttatttggtatcactttggtcccttaa 39547971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 204 - 370
Target Start/End: Complemental strand, 40681561 - 40681395
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    |||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  40681561 taggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctctg 40681462  T
Q  304 ttacatgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40681461 ttacatgttttggtcccttccgttagttttaataaaaaaacgttaactgctatccacgtgtcatttt 40681395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 205 - 370
Target Start/End: Original strand, 9086286 - 9086457
Alignment:
Q  205 aggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnn------gattgttttggtactttatctttat 298  Q
    |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||              |||||||||||||||||||||||||    
T  9086286 aggtttaatttctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaaaaaaaagattgttttggtactttatctttat 9086385  T
Q  299 ctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9086386 ctccgttacatgttttggtcccttccgttagttttaatcaaaaaacgttacctgctatccacgtgtcatttt 9086457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 50282975 - 50282868
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||| |         |||||||  |||||||||||||||||||||||| ||||||||||    
T  50282975 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaa--attgtttaagtactttatctttatctctgttacctgttttggtc 50282878  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  50282877 ccttccgtta 50282868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 53596194 - 53596085
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||| |||||| |||||| |        ||||||||  |||||||||||||||||| ||||| ||||||||||    
T  53596194 ttttggtcccttaagtatttatttggtatcgttttggttccttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctgttttggtc 53596095  T
Q  319 tcttccgtta 328  Q
    ||||| ||||    
T  53596094 tcttctgtta 53596085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 2734795 - 2734919
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    ||||||||| || | |||| |||||||||||  ||||||  ||||| ||||||||||||| |        ||||||||  |||||||||||| ||||| |    
T  2734795 taggtttaaatgttcttttggtcccttaagtatttattttgtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccg 2734894  T
Q  304 ttacatgttttggtctcttccgtta 328  Q
    |||| ||||||||||||||| ||||    
T  2734895 ttacctgttttggtctcttctgtta 2734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 328
Target Start/End: Complemental strand, 26281290 - 26281186
Alignment:
Q  224 gtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttc 323  Q
    |||||||||||  ||||||| ||||| ||||||||||||| |        ||||||||  |||||||||||||||||| ||||| | |||||||| ||||    
T  26281290 gtcccttaagtatttatttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctattttggtcccttc 26281191  T
Q  324 cgtta 328  Q
    |||||    
T  26281190 cgtta 26281186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 701636 - 701686
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| |||||||||||||| ||||| |||| |||||||||||||||    
T  701636 ttaattgctattttcgtcccttaacttattttttggtatcgctttggtccc 701686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 769935 - 769985
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| |||||||||||||| ||||| |||| |||||||||||||||    
T  769935 ttaattgctattttcgtcccttaacttattttttggtatcgctttggtccc 769985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 33626159 - 33626109
Alignment:
Q  298 tctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    |||||||||||  ||||||||| |||||||||||||||| |||||||||||    
T  33626159 tctctgttacacattttggtcttttccgttagttttaattaaaaaacgtta 33626109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 44183796 - 44183742
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||||  |||||||||||||||||||||||| ||||||||||  ||||||||    
T  44183796 gattgtttaagtactttatctttatctctgttacctgttttggtccattccgtta 44183742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 757559 - 757504
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    |||| ||||||||| ||||| |||||||| ||||| |||| |||||||||||||||    
T  757559 taggcttaattgctattttcatcccttaacttattttttggtatcgctttggtccc 757504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 43629177 - 43629296
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    ||||||||| |||| |||| ||| |||||||  ||||||| ||||| |||||| |||||| |         |||||||  ||||||||| ||||||| ||    
T  43629177 taggtttaaatgctcttttggtctcttaagtatttatttggtatcgttttggttccttaactaaaaaaaaaattgtttgagtactttatttttatctatg 43629276  T
Q  304 ttacatgttttggtctcttc 323  Q
    |||| |||||||||||||||    
T  43629277 ttacctgttttggtctcttc 43629296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 702705 - 702655
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| |||||||||||||| | ||| |||| |||||||||||||||    
T  702705 ttaattgctattttcgtcccttaactaattttttggtatcgctttggtccc 702655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 756490 - 756540
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| |||||||||||||| | ||| |||| |||||||||||||||    
T  756490 ttaattgctattttcgtcccttaactaattttttggtatcgctttggtccc 756540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 771004 - 770954
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| |||||||||||||| | ||| |||| |||||||||||||||    
T  771004 ttaattgctattttcgtcccttaactaattttttggtatcgctttggtccc 770954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 11816744 - 11816690
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||||  ||| |||||||||||||| ||||| |||||||||| |||||||||    
T  11816744 gattgtttgagtattttatctttatctccgttacctgttttggtcccttccgtta 11816690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 35060508 - 35060458
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| |||||||||||||| | ||| |||| |||||||||||||||    
T  35060508 ttaattgctattttcgtcccttaactaattttttggtatcgctttggtccc 35060458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 42779607 - 42779661
Alignment:
Q  294 tttatctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    ||||||| |||||||  ||||||||| ||||||||||||||||  ||||||||||    
T  42779607 tttatctttgttacacattttggtcttttccgttagttttaattcaaaaacgtta 42779661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 318
Target Start/End: Original strand, 44182580 - 44182674
Alignment:
Q  224 gtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||  ||||||| ||||| ||||||||||||| |        ||||||||  |||||||||||||||||| ||||| ||||||||||    
T  44182580 gtcctttaagtatttatttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctgttttggtc 44182674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 45911869 - 45911819
Alignment:
Q  298 tctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    |||||||||||  ||||||||| ||||||||||||||||  ||||||||||    
T  45911869 tctctgttacacattttggtcttttccgttagttttaatttaaaaacgtta 45911819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 46621222 - 46621172
Alignment:
Q  298 tctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    |||||||||||  ||||||||  |||||||||||||||| |||||||||||    
T  46621222 tctctgttacacattttggtcctttccgttagttttaattaaaaaacgtta 46621172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 51399570 - 51399524
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    |||| |||||||||||  ||||||| |||||||||||||||||||||    
T  51399570 ttttggtcccttaagtatttatttggtatcgctttggtcccttaagt 51399524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 41845493 - 41845558
Alignment:
Q  198 aaaaactaggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    ||||| |||| |||| |||| |||| ||||||||| | |||| ||| |||||||||||||||||||    
T  41845493 aaaaaataggcttaaatgctcttttggtcccttaactaattaattggtatcgctttggtcccttaa 41845558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 45044399 - 45044480
Alignment:
Q  237 ttatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    ||||||| ||||||||||||| ||||| |        ||||||||  |||||||||||||||||| ||||| ||||||||||    
T  45044399 ttatttggtatcgctttggtctcttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctgttttggtc 45044480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 2735422 - 2735466
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    ||||||||||||||||  ||||||| |||| ||||||||||||||    
T  2735422 ttttcgtcccttaagtatttatttggtatcactttggtcccttaa 2735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 29864468 - 29864420
Alignment:
Q  300 tctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    |||||||||  ||||||||| ||||||||||||||||  ||||||||||    
T  29864468 tctgttacacattttggtcttttccgttagttttaattcaaaaacgtta 29864420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 13463203 - 13463042
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||| ||||||    
T  13463203 ttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaatagattgttttggtactttatctttatctccgttaca 13463104  T
Q  309 tgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13463103 tgttttggtcccttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 13463042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 22594331 - 22594440
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||| |        ||||||||  |||||||||||||||||||||||| ||||||||||    
T  22594331 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttacctgttttggtc 22594430  T
Q  319 tcttccgtta 328  Q
     |||| ||||    
T  22594431 ccttctgtta 22594440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 44553141 - 44553250
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||| ||||||||||||| |        ||||||||  ||| |||||||||||||| ||||| ||||||||||    
T  44553141 ttttggtcccttaagtatttatttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggtc 44553240  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  44553241 ccttccgtta 44553250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 36182281 - 36182170
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    |||| |||| |||| |||| ||||||||| | |||||||| |||||||||| |||||||| |        |||| |||  ||||||||||||||||||||    
T  36182281 taggcttaaatgctcttttggtcccttaaat-attatttgttatcgctttgatcccttaactaaaaaaaagattatttcagtactttatctttatctctg 36182183  T
Q  304 ttacatgttttgg 316  Q
    |||| ||||||||    
T  36182182 ttacttgttttgg 36182170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 16905255 - 16905310
Alignment:
Q  206 ggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccctt 261  Q
    ||||||| |||| |||| |||||||||||  ||||||| |||||||||||||||||    
T  16905255 ggtttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtccctt 16905310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 9317028 - 9317082
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| |||| |||| |||||||||||  |||||||||||| ||||||||||||||    
T  9317028 ttaaatgctcttttggtcccttaagtatttatttgatatcactttggtcccttaa 9317082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 18914546 - 18914496
Alignment:
Q  298 tctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    |||||||||||  ||||||||| ||||||||||||||||  ||||||||||    
T  18914546 tctctgttacacattttggtcttttccgttagttttaattcaaaaacgtta 18914496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 30864162 - 30864220
Alignment:
Q  205 aggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||||||| |||| |||| |||||||||||  ||| ||| |||||||||||||||||||    
T  30864162 aggtttaaatgctcttttggtcccttaagtatttaattggtatcgctttggtcccttaa 30864220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 39270849 - 39270799
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| |||||||||||||| ||||| |||| ||||| |||||||||    
T  39270849 ttaattgctattttcgtcccttaacttattttttggtatcgttttggtccc 39270799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 45378603 - 45378553
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| |||||||||||||| | ||| |||| |||||||||||||||    
T  45378603 ttaattgctattttcgtcccttaaataattttttggtatcgctttggtccc 45378553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 10134606 - 10134667
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    |||| |||| |||| |||| |||||||||||  ||||||| ||||||||||||||| |||||    
T  10134606 taggcttaaatgctctttttgtcccttaagtatttatttggtatcgctttggtcccataagt 10134667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 11174214 - 11174169
Alignment:
Q  218 gttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    ||||| |||||||||||| ||| ||| |||||||||||||||||||    
T  11174214 gttttggtcccttaagtttttaattggtatcgctttggtcccttaa 11174169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 44632698 - 44632759
Alignment:
Q  198 aaaaactaggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||| |||||||||||||| |||||||| ||||| | ||| |||| ||||| |||||||||    
T  44632698 aaaaaataggtttaattgctattttcgtctcttaattaattttttggtatcgttttggtccc 44632759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 30766739 - 30766577
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||        |||||||||||||||||||||||||||| ||||||    
T  30766739 ttaattgcttttttcgtcccttaagttattatttggtatcactttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctccgttaca 30766640  T
Q  309 tgttttggtctcttccgttagttttaatcaa-aaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30766639 tgttttggtcccttccgttagttttaatcaaaaaaacgttaactgctatccacgtgtcatttt 30766577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 192 - 370
Target Start/End: Complemental strand, 17279513 - 17279336
Alignment:
Q  192 acttataaaaactaggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnn-gattgttttggtacttt 290  Q
    ||||||||||  |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||         |||||||||||||||||    
T  17279513 acttataaaa--taggtttaattgctcttttcatcccttaagttattatttggtatcgctttggtcctttaagtaaaaaaaaagattgttttggtacttt 17279416  T
Q  291 atctttatctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17279415 atctttatctctattacatgttttggtcatttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 17279336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 209 - 328
Target Start/End: Complemental strand, 25445133 - 25445015
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||  |||||||||||||||||| ||||||    
T  25445133 ttaattgctcttttcgtcccttaagttattatttgatatcactttggtcccttaagtaaaaaaaagattgtttgtgtactttatctttatctccgttaca 25445034  T
Q  309 tgttttggtctcttccgtta 328  Q
    |||||||||| |||||||||    
T  25445033 tgttttggtc-cttccgtta 25445015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 17236062 - 17236176
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    |||| |||| |||| |||| |||| ||||||  ||||||| ||||||||||| ||||||| |        ||||||||  ||||||||| |||||||| |    
T  17236062 taggcttaaatgctcttttggtcctttaagtatttatttggtatcgctttggccccttaactaaaaaaaagattgtttgagtactttatttttatctccg 17236161  T
Q  304 ttacatgttttggtc 318  Q
    |||||||||||||||    
T  17236162 ttacatgttttggtc 17236176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 17278412 - 17278521
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||||| |  ||||||| |||| |||||||||||||| |        ||||||||  |||||||||||| ||||| ||||| ||||||||||    
T  17278412 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtc 17278511  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  17278512 ccttccgtta 17278521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 30765681 - 30765790
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||||| |  ||||||| |||| |||||||||||||| |        ||||||||  |||||||||||| ||||| ||||| ||||||||||    
T  30765681 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtc 30765780  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  30765781 ccttccgtta 30765790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 45087137 - 45087202
Alignment:
Q  278 gttttggtactttatctttatctctgttacatgttttggtctcttccgttagttttaatcaaaaaa 343  Q
    ||||||||| |||| ||||  ||| ||||||||||||||||| |||||||| ||||| ||||||||    
T  45087137 gttttggtattttaacttttgctccgttacatgttttggtcttttccgttaattttattcaaaaaa 45087202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 472934 - 472874
Alignment:
Q  205 aggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    |||||||| |||| |||| |||||||||||  ||||||| ||||||||||||||| |||||    
T  472934 aggtttaaatgcttttttggtcccttaagtatttatttggtatcgctttggtcccataagt 472874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 36721058 - 36720994
Alignment:
Q  199 aaaactaggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| |||| |||| |||| |||| |||||||||||  ||| |||||||||||||||||||||||    
T  36721058 aaaaataggcttaaatgctcttttggtcccttaagtatttaattgatatcgctttggtcccttaa 36720994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 32072296 - 32072355
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| |||| |||| |||| |||||||||||  ||| |||||||||||||||||||||||    
T  32072296 taggcttaaatgctcttttggtcccttaagtatttaattgatatcgctttggtcccttaa 32072355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 26024890 - 26024940
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| | |||||||||||| ||||| |||| |||||||||||||||    
T  26024890 ttaattgctatcttcgtcccttaacttattttttggtatcgctttggtccc 26024940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 42753981 - 42754035
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||||  |||||||||||||||||| ||||| |||||||||| |||| ||||    
T  42753981 gattgtttgagtactttatctttatctccgttacctgttttggtcccttctgtta 42754035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 42754539 - 42754593
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| |||| ||||||||||||||||  ||||||| |||| ||||||||||||||    
T  42754539 ttaaatgctcttttcgtcccttaagtatttatttggtatcactttggtcccttaa 42754593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 10990559 - 10990511
Alignment:
Q  303 gttacatgttttggtctcttccgttagttttaatcaaaaaacgttaact 351  Q
    ||||||| |||| ||||||||||| ||||||||| ||| ||||||||||    
T  10990559 gttacatattttagtctcttccgtcagttttaataaaataacgttaact 10990511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 16955998 - 16956042
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    ||||||||  |||||||||||||||||| ||||| ||||||||||    
T  16955998 gattgtttgagtactttatctttatctccgttacctgttttggtc 16956042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 206 - 370
Target Start/End: Original strand, 40468046 - 40468211
Alignment:
Q  206 ggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgtt 305  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||| | |    
T  40468046 ggtttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctccgat 40468145  T
Q  306 acatgttttggtctcttccgttagttttaatc-aaaaaacgttaactgctatccacgtgtcatttt 370  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  40468146 acatgttttggtcccttccgttagttttaatcaaaaaaacgttaactgctatccatgtgtcatttt 40468211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 19297530 - 19297692
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||        ||||||||||||||||||| |||||||||||||||    
T  19297530 ttaattgctcttttcgtcccttaagttattatttggtatcgttttggtcccttaagtaaaaaaaagattgttttggtactttatttttatctctgttaca 19297629  T
Q  309 tgttttggtctcttccgttagttttaatc-aaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||||| ||||| ||| |||||||| |||||||||||||||||| ||||||||||||||    
T  19297630 tgttttggtcccttcctttaattttaatcaaaaaaacgttaactgctacccacgtgtcatttt 19297692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 204 - 370
Target Start/End: Complemental strand, 20686737 - 20686566
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnn----gattgttttggtactttatctttatc 299  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||            ||||||||||||||||||||||||||    
T  20686737 taggcttaattgcttttttcgtcccttaagttattatttggtattgctttggtcccttaagtaaaaaaagaaaagattgttttggtactttatctttatc 20686638  T
Q  300 tctgttacatgttttggtctcttccgttagttttaatcaa-aaaacgttaactgctatccacgtgtcatttt 370  Q
    || |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20686637 tccgttacatgttttggtcccttccgttagttttaatcaaaaaaacgttaactgctatccacgtgtcatttt 20686566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 204 - 370
Target Start/End: Complemental strand, 28190548 - 28190379
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnn---gattgttttggtactttatctttatct 300  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||||  |||||||||||||||           |||||||||||||||||||||||||||    
T  28190548 taggcttaattgcttttttcgtcccttaagttattatttggtatcattttggtcccttaagtaaaaaaaaaaagattgttttggtactttatctttatct 28190449  T
Q  301 ctgttacatgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    | |||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  28190448 ccgttacatgttttggtcccttccgttagttttaataaaaaaatgttaactgctatccacgtgtcatttt 28190379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 8028969 - 8029130
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||||| ||| |||| |||||||||||||||| ||||||||||||||||| |||         ||||||||||||||||||||||||||| |||| |    
T  8028969 ttaattgctatttccgtctcttaagttattatttggtatcgctttggtcccttgagtaaaaaaaaaattgttttggtactttatctttatctccgttaga 8029068  T
Q  309 tgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8029069 tgttttggcccgttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 8029130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 328
Target Start/End: Complemental strand, 10709419 - 10709300
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||| | |||| |||||||||||||||||| | ||||| |||||||||||||||        |||||||| | ||||||||||| ||||| ||||||    
T  10709419 ttaattgttctttttgtcccttaagttattattaggtatcgatttggtcccttaagtaaaaaaaagattgtttggatactttatcttgatctccgttaca 10709320  T
Q  309 tgttttggtctcttccgtta 328  Q
    |||||||||| |||||||||    
T  10709319 tgttttggtcccttccgtta 10709300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 16329745 - 16329866
Alignment:
Q  206 ggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgtt 305  Q
    ||||||| |||| |||| ||| |||||||  ||||||| ||||||||||||||||||| |        ||||||||  ||||||||||||||||||||||    
T  16329745 ggtttaaatgctcttttggtctcttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgtt 16329844  T
Q  306 acatgttttggtctcttccgtt 327  Q
    |  |||||||||| ||||||||    
T  16329845 atctgttttggtcccttccgtt 16329866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 328
Target Start/End: Complemental strand, 11131234 - 11131120
Alignment:
Q  214 tgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttt 313  Q
    |||| |||| |||||||||||  ||||||| ||||||||||||||||||| |        ||||||||  ||| ||||| |||||||||||||| |||||    
T  11131234 tgctcttttagtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttcagtaatttatatttatctctgttacctgttt 11131135  T
Q  314 tggtctcttccgtta 328  Q
    |||| ||||| ||||    
T  11131134 tggtttcttctgtta 11131120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 29519236 - 29519280
Alignment:
Q  284 gtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  29519236 gtactttatctttatctccgttacttgttttggtctcttccgtta 29519280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 8885657 - 8885780
Alignment:
Q  205 aggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgt 304  Q
    |||||||| |||  |||| |||||||||||  ||||||| ||||||||||||||||||| |        |||| |||  ||| ||||| |||||||| ||    
T  8885657 aggtttaaatgcgtttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtattttatatttatctccgt 8885756  T
Q  305 tacatgttttggtctcttccgtta 328  Q
    ||| |||||||||| |||||||||    
T  8885757 tacctgttttggtcccttccgtta 8885780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 29520036 - 29519982
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    |||||||| | ||||||||||||||||||||||| |||||||||| |||| ||||    
T  29520036 gattgtttggatactttatctttatctctgttacctgttttggtcccttctgtta 29519982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 12602642 - 12602533
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||| |        ||||||||  ||| ||||| |||||||||| ||| ||||||||||    
T  12602642 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatatttatctctgctacctgttttggtc 12602543  T
Q  319 tcttccgtta 328  Q
      ||||||||    
T  12602542 ctttccgtta 12602533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 8030036 - 8029945
Alignment:
Q  237 ttatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||| |||| |||||||||||||| |        ||||||||  |||||||||||| ||||| ||||| |||||||||| |||||||||    
T  8030036 ttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 8029945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 18950803 - 18950852
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttc 323  Q
    ||||||||  ||||||||||||||||| |||||| |||||||||| ||||    
T  18950803 gattgtttgagtactttatctttatctatgttacctgttttggtcccttc 18950852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 28189516 - 28189569
Alignment:
Q  275 attgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    |||||||  |||||||||||| ||||| ||||| |||||||||| |||||||||    
T  28189516 attgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 28189569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 35738436 - 35738489
Alignment:
Q  279 ttttggtactttatctttatctctgttacatgttttggtctcttccgttagttt 332  Q
    |||||||| |||| |||||||| |||||||| ||||||||  ||||||||||||    
T  35738436 ttttggtattttaactttatctttgttacatattttggtcatttccgttagttt 35738489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 39912940 - 39912871
Alignment:
Q  279 ttttggtactttatctttatctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    ||||||| | ||| |||| |||||||||||  ||||||||  ||||||||||||||||  ||||||||||    
T  39912940 ttttggtcccttaactttctctctgttacaccttttggtcatttccgttagttttaattcaaaaacgtta 39912871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 32304230 - 32304396
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    |||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||| |    
T  32304230 taggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctccg 32304329  T
Q  304 ttacatgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||||||||||  |||||||| ||||||| ||||||||||||||| |||||||||||||||||    
T  32304330 ttacatgttttggtcctttccgttaattttaataaaaaaacgttaactgttatccacgtgtcatttt 32304396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 34819675 - 34819514
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||||| ||||||||||||||||||||||||| ||| | |||||| ||||||||        | |||||| ||||||||||||||||||||||||||    
T  34819675 ttaattgctcttttcgtcccttaagttattatttggtattgatttggttccttaagtaaaaaaaaggttgtttaggtactttatctttatctctgttaca 34819576  T
Q  309 tgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    ||||||||||  ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  34819575 tgttttggtccattccgttagttttaatcaaaaaacgttaactactatccacatgtcatttt 34819514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 17509467 - 17509630
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||||||||||| |||         ||||||| ||||||||||||||||||| ||||||    
T  17509467 ttaattgttcttttcgtcccttaagttattatttggtatcgctttggtcccttcagtaaaaacaaaattgtttgggtactttatctttatctccgttaca 17509566  T
Q  309 tgttttggtctcttccgttagtttta--atcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||| ||||||||||||| |||||  || |||||||||||||||||||||||||||||||||    
T  17509567 tgttttagtctcttccgttaattttaatataaaaaaacgttaactgctatccacgtgtcatttt 17509630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 42540166 - 42540328
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnn-gattgttttggtactttatctttatctctgttac 307  Q
    |||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||         ||||||||||||||||||||||||||||  |||     
T  42540166 ttaattactcttttcgtcccttaagttattatttggtatcgctttggtccct-aagtaaaaaaaaagattgttttggtactttatctttatctccattaa 42540264  T
Q  308 atgttttggtctcttccgttagttttaat-caaaaaacgttaactgctatccacgtgtcatttt 370  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||    
T  42540265 atgttttggtctcttccgttaattttaataaaaaaaacgttaactgctattcacgtgtcatttt 42540328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 54831873 - 54831977
Alignment:
Q  224 gtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttc 323  Q
    ||||||||| |  ||||||| ||||||||||||||||||| |        ||||||||  ||| |||||||||||||||||||| |||||||||| ||||    
T  54831873 gtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctctgttacctgttttggtcccttc 54831972  T
Q  324 cgtta 328  Q
     ||||    
T  54831973 agtta 54831977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 34817399 - 34817453
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||||  |||||||||||||||||| ||||| |||||||||| |||||||||    
T  34817399 gattgtttgagtactttatctttatctccgttacctgttttggtcccttccgtta 34817453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 32305315 - 32305206
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||||| |  ||||||| |||| |||||||||||||| |        ||||||||  |||||||||||| ||||| ||||| ||||||||||    
T  32305315 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtc 32305216  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  32305215 ccttccgtta 32305206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 42541227 - 42541136
Alignment:
Q  237 ttatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||| |||| |||||||||||||| |        ||||||||  |||||||||||| ||||||||||| |||||||||| |||| ||||    
T  42541227 ttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctctgttacctgttttggtcccttctgtta 42541136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 17514699 - 17514645
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||||  ||||||||||||||||||  |||| |||||||||| |||||||||    
T  17514699 gattgtttgagtactttatctttatctccattacctgttttggtcccttccgtta 17514645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 52857340 - 52857286
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| |||| |||| |||||||||||  ||||||| |||||||||||||||||||    
T  52857340 ttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaa 52857286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 54081374 - 54081424
Alignment:
Q  298 tctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    |||||||||||| ||||||||| ||| ||||||||||||  ||||||||||    
T  54081374 tctctgttacatattttggtcttttctgttagttttaatttaaaaacgtta 54081424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 7743063 - 7743010
Alignment:
Q  295 ttatctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    ||||||||||||||  ||||||||  ||||||||||||||||  ||||||||||    
T  7743063 ttatctctgttacacattttggtcctttccgttagttttaattcaaaaacgtta 7743010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 13302016 - 13301955
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    |||| |||| |||| |||| |||||||||||  ||||||| ||||||||||||||| |||||    
T  13302016 taggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccgtaagt 13301955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 13312672 - 13312611
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    |||| |||| |||| |||| |||||||||||  ||||||| ||||||||||||||| |||||    
T  13312672 taggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccgtaagt 13312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 33772066 - 33772127
Alignment:
Q  282 tggtactttatctttatctctgttacatgttttggtctcttccgttagttttaatcaaaaaa 343  Q
    ||||| |||| |||||| || ||||||  ||||||||| |||||||||||||||| ||||||    
T  33772066 tggtattttaactttatttccgttacacattttggtcttttccgttagttttaattaaaaaa 33772127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 4953127 - 4953183
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    |||| |||| |||| ||||||||||   ||||||| |||||||||||||||||||||    
T  4953127 ttaaatgctcttttggtcccttaaggatttatttggtatcgctttggtcccttaagt 4953183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 17273874 - 17273918
Alignment:
Q  304 ttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    |||||| ||||||||| || ||||||||||||| |||||||||||    
T  17273874 ttacatattttggtctttttcgttagttttaattaaaaaacgtta 17273918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 43464815 - 43464871
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    |||| |||| |||| |||||||||||  ||||||| ||||||||||||||| |||||    
T  43464815 ttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccataagt 43464871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 52255576 - 52255532
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| |||||||||||  ||||||| |||||||||||||||||||    
T  52255576 ttttggtcccttaagtatttatttggtatcgctttggtcccttaa 52255532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 53228259 - 53228215
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| |||||||||||  ||||||| |||||||||||||||||||    
T  53228259 ttttggtcccttaagtatttatttggtatcgctttggtcccttaa 53228215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 204 - 370
Target Start/End: Complemental strand, 36143195 - 36143029
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctg 303  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||        ||||||||||||| |||||||||||||| |    
T  36143195 taggcttaattgctcttttcgtcccttaagttattatttggtatcgatttggtcccttaagtaaaaaaaagattgttttggtattttatctttatctccg 36143096  T
Q  304 ttacatgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36143095 ttacatgttttggtccattccgttagttttaataaaaaaacgttaactgctatccacgtgtcatttt 36143029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 47113169 - 47113007
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||        |||| ||||||||||||||||||||||| ||||||    
T  47113169 ttaattgctcttttcgtcccttaagttattatttggtatcgctttgatcccttaagtaaaaaaaagattattttggtactttatctttatctccgttaca 47113070  T
Q  309 tgttttggtctcttccgttagttttaat-caaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||||| ||||||||| |||||||  |||||||||||||||||||||||||||||||||    
T  47113069 tgttttggtcccttccgttaattttaataaaaaaaacgttaactgctatccacgtgtcatttt 47113007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 35123252 - 35123092
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||| ||| ||||| | ||||||||||||||||| ||||  |||||||||||||||        ||||||||||||| |||||||||||||  ||||||    
T  35123252 ttaatagctattttccttccttaagttattatttggtatcattttggtcccttaagtaaaaaaaagattgttttggtattttatctttatcttcgttaca 35123153  T
Q  309 tgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||||| ||||||||||||||||| ||||||  |||| || |||||||||||||||||    
T  35123152 tgttttggtcccttccgttagttttaat-aaaaaaaattaattgttatccacgtgtcatttt 35123092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 49964203 - 49964093
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnn---gattgttttggtactttatctttatctctgtt 305  Q
    ||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  49964203 ttaattgctcttttcatcccttaagttattatttggtatcactttggtcccttaagtaaaaaaaaaaagattgttttggtactttatctttatctctgtt 49964104  T
Q  306 acatgttttgg 316  Q
    |||||||||||    
T  49964103 acatgttttgg 49964093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 369
Target Start/End: Complemental strand, 49653714 - 49653619
Alignment:
Q  275 attgttttggtactttatctttatctctgttacatgttttggtctcttccgttagttttaatcaa-aaaacgttaactgctatccacgtgtcattt 369  Q
    |||||||  ||||||||| |||||||| |||||||||||||||  |||| ||||||||||||||| |||| |||||||| ||||||||||||||||    
T  49653714 attgtttaagtactttatatttatctccgttacatgttttggttccttctgttagttttaatcaaaaaaatgttaactgttatccacgtgtcattt 49653619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 16659949 - 16659840
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||| |         |||||||  |||||||||||||||||||||||| ||||||||||    
T  16659949 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaaaattgtttgagtactttatctttatctctgttacctgttttggtc 16659850  T
Q  319 tcttccgtta 328  Q
     |||| ||||    
T  16659849 ccttctgtta 16659840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 29021595 - 29021704
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| ||||||||| |  ||||||| ||||||||||||||||||| |        ||||||||  |||||||||||||||||||||||| ||||||||||    
T  29021595 ttttggtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttacctgttttggtc 29021694  T
Q  319 tcttccgtta 328  Q
     |||| ||||    
T  29021695 ccttctgtta 29021704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 328
Target Start/End: Original strand, 24326585 - 24326704
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    |||| |||| |||| ||||||||| |  ||||||| ||||||||||||||||||| |        |||| |||  |||||||||||||||||| |||||     
T  24326585 ttaaatgctcttttggtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtactttatctttatctccgttacc 24326684  T
Q  309 tgttttggtctcttccgtta 328  Q
    | |||||||| |||||||||    
T  24326685 tattttggtcccttccgtta 24326704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 29022576 - 29022485
Alignment:
Q  237 ttatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||| |||| |||||||||||||| |        ||||||||  |||||||||||||||||| ||||| |||||||||| |||||||||    
T  29022576 ttatttggtatcactttggtcccttaactaaaaaaaagattgtttaagtactttatctttatctccgttacctgttttggtcccttccgtta 29022485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 51597964 - 51598014
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtccc 259  Q
    ||||||||| |||||||||||||| ||||| |||| |||||||||||||||    
T  51597964 ttaattgctattttcgtcccttaacttattttttggtatcgctttggtccc 51598014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 5806038 - 5805913
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnn-gattgttttggtactttatctttatctct 302  Q
    ||||||||| |||| |||| ||| |||||||  ||||||| ||||| ||||||||||||| |         |||| |||  |||||||||||||||||||    
T  5806038 taggtttaaatgctcttttggtctcttaagtatttatttggtatcgttttggtcccttaactaaaaaaaaagattttttcagtactttatctttatctct 5805939  T
Q  303 gttacatgttttggtctcttccgtta 328  Q
    ||||  ||||||||||||||| ||||    
T  5805938 gttatctgttttggtctcttctgtta 5805913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 51241737 - 51241846
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||| |        ||||||||  ||| ||||||||||  || ||||| ||||||||||    
T  51241737 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatctttacttccgttacctgttttggtc 51241836  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  51241837 ccttccgtta 51241846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 967909 - 968013
Alignment:
Q  224 gtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttc 323  Q
    |||||||||||  ||||||| ||||| |||||||||||||          ||||||||  ||||||||| ||||||| |||||| | |||||||||||||    
T  967909 gtcccttaagtatttatttggtatcgttttggtcccttaacaaaaataaagattgtttgagtactttatttttatctatgttacctattttggtctcttc 968008  T
Q  324 cgtta 328  Q
    |||||    
T  968009 cgtta 968013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 5804696 - 5804816
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    |||| |||| |||| |||||||||||  ||||||| ||||||||||||||||||| |        ||||||||  ||||||||  || || | |||||||    
T  5804696 ttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttcagtactttaatttaatttttgttaca 5804795  T
Q  309 tgttttggtctcttccgttag 329  Q
    | |||||||| ||||||||||    
T  5804796 ttttttggtcccttccgttag 5804816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 2939777 - 2939706
Alignment:
Q  277 tgttttggtactttatctttatctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    |||||||||| |||| ||||  ||| ||||| ||||||||||  |||||||| ||||| |||||||||||||    
T  2939777 tgttttggtattttaacttttgctccgttacttgttttggtcatttccgttaattttattcaaaaaacgtta 2939706  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 6328390 - 6328331
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| ||||||||| |||| |||||||||||  ||| ||| |||||||||||||||||||    
T  6328390 taggcttaattgctcttttggtcccttaagtatttaattggtatcgctttggtcccttaa 6328331  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 24332341 - 24332250
Alignment:
Q  237 ttatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||| ||||||||||||||||||| |        |||| |||  |||||||||||||||||| ||||| | |||||||| |||||||||    
T  24332341 ttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtactttatctttatctccgttacctattttggtcccttccgtta 24332250  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 49652429 - 49652520
Alignment:
Q  237 ttatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||| |||| |||||||||||||| |        ||||||||  |||||||||||||||| ||||||| | ||||||||| ||||||||    
T  49652429 ttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatctttatccctgttacctattttggtcttttccgtta 49652520  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 28970510 - 28970556
Alignment:
Q  298 tctctgttacatgttttggtctcttccgttagttttaatcaaaaaac 344  Q
    |||||||||||  ||||||||| |||||||||||||||| |||||||    
T  28970510 tctctgttacacattttggtcttttccgttagttttaattaaaaaac 28970556  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 36142178 - 36142232
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||||  |||||||||||||||||| ||||| ||||||||||  ||||||||    
T  36142178 gattgtttaagtactttatctttatctccgttacctgttttggtcctttccgtta 36142232  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 14118603 - 14118671
Alignment:
Q  279 ttttggtactttatctttatctctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    ||||||||||||| |||| |||| ||||||  |||| |||| ||||||||||||||||  ||||||||||    
T  14118603 ttttggtactttaacttt-tctccgttacacattttagtcttttccgttagttttaattcaaaaacgtta 14118671  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 52751552 - 52751499
Alignment:
Q  275 attgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    |||||||  |||||||||||||||||| ||||| |||||| ||| |||||||||    
T  52751552 attgtttgagtactttatctttatctcagttacttgtttttgtcccttccgtta 52751499  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 16659316 - 16659272
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    ||||||||||||||||  ||||||| |||| ||||||||||||||    
T  16659316 ttttcgtcccttaagtatttatttggtatcactttggtcccttaa 16659272  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 35814451 - 35814395
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    |||| |||| |||| |||||||||||  ||| ||| |||||||||||||||||||||    
T  35814451 ttaaatgctcttttggtcccttaagtatttacttggtatcgctttggtcccttaagt 35814395  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 37199025 - 37199073
Alignment:
Q  300 tctgttacatgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    |||||||||  ||||||||| ||||||||||||||||  ||||||||||    
T  37199025 tctgttacacattttggtcttttccgttagttttaattcaaaaacgtta 37199073  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 47112176 - 47112216
Alignment:
Q  288 tttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    |||||||| ||||| ||||| ||||||||||||||||||||    
T  47112176 tttatcttcatctccgttacctgttttggtctcttccgtta 47112216  T

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Target: scaffold0202 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 21235 - 21392
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||| ||| ||||||||| ||||||||||||||||||| ||||||||   ||||||        |||||||| | ||||||||||||||||||||||||    
T  21235 ttaatcgctcttttcgtcc-ttaagttattatttgatatagctttggtt--ttaagtaaaaaaa-gattgtttagatactttatctttatctctgttaca 21330  T
Q  309 tgttttggtctcttccgttagttttaatcaaaaaacgttaactgctatccacgtgtcatttt 370  Q
    |||||||||||||||||||||||||||| ||||||| | |||| |||| ||| |||||||||    
T  21331 tgttttggtctcttccgttagttttaataaaaaaacatcaactactattcacttgtcatttt 21392  T

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Target: scaffold0202; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 22195 - 22141
Alignment:
Q  274 gattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 328  Q
    ||||||||  ||||||||| |||||||||||||| |||||||||| |||||||||    
T  22195 gattgtttgagtactttatttttatctctgttacctgttttggtcccttccgtta 22141  T

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Target: scaffold0192 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 14748 - 14641
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttacatgttttggtc 318  Q
    |||| |||||||||||  ||||||||||||||||||||||||||| |        ||||||||  ||| |||||||||||||||||||| ||||||||||    
T  14748 ttttggtcccttaagtatttatttgatatcgctttggtcccttaactaaaaaa--gattgtttgagtattttatctttatctctgttacctgttttggtc 14651  T
Q  319 tcttccgtta 328  Q
     |||||||||    
T  14650 ccttccgtta 14641  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 428983 - 429027
Alignment:
Q  219 ttttcgtcccttaagttattatttgatatcgctttggtcccttaa 263  Q
    |||| |||||||||||||||||||| |||||||||||||||||||    
T  428983 ttttggtcccttaagttattatttggtatcgctttggtcccttaa 429027  T

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Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 429208 - 429159
Alignment:
Q  204 taggtttaattgctgttttcgtcccttaagttattatttgatatcgcttt 253  Q
    |||| ||||||||| |||| |||||||||||||||||||| |||||||||    
T  429208 taggcttaattgcttttttggtcccttaagttattatttggtatcgcttt 429159  T

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Target: scaffold0042 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 90159 - 90219
Alignment:
Q  205 aggtttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    ||||||||||||| |||| |||||||||||| ||| ||  |||| ||||||||||||||||    
T  90159 aggtttaattgctctttttgtcccttaagtttttacttcgtatcactttggtcccttaagt 90219  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 348
Target Start/End: Complemental strand, 71884 - 71745
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagtnnnnnnnngattgttttggtactttatctttatctctgttaca 308  Q
    ||||||||| |||| ||||||||| | ||| |||| ||||||||||||||| ||| |        |   ||| ||||| |||| ||||  ||| ||||||    
T  71884 ttaattgctattttagtcccttaactaattttttggtatcgctttggtcccataactaaaaaaaggtccgttgtggtattttaacttttgctccgttaca 71785  T
Q  309 tgttttggtctcttccgttagttttaatcaaaaaacgtta 348  Q
    ||||||||||  |||||||| ||||| |||||||||||||    
T  71784 tgttttggtcctttccgttaattttattcaaaaaacgtta 71745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 70743 - 70807
Alignment:
Q  279 ttttggtactttatctttatctctgttacatgttttggtctcttccgttagttttaatcaaaaaa 343  Q
    |||||||| |||| ||||  ||| ||||||||||||||||  |||||||| ||||| ||||||||    
T  70743 ttttggtattttaacttttactccgttacatgttttggtcctttccgttaattttattcaaaaaa 70807  T

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Target: scaffold0220 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 25966 - 26022
Alignment:
Q  209 ttaattgctgttttcgtcccttaagttattatttgatatcgctttggtcccttaagt 265  Q
    |||| |||| |||| |||||||||||  ||||||| ||||||||||||||| |||||    
T  25966 ttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccataagt 26022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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