View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_24 (Length: 376)

Name: NF9369_low_24
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_24
NF9369_low_24
[»] chr7 (5 HSPs)
chr7 (43-363)||(12546233-12546553)
chr7 (80-161)||(9107298-9107378)
chr7 (80-169)||(13311968-13312056)
chr7 (17-169)||(22567909-22568063)
chr7 (76-120)||(9427962-9428006)
[»] chr3 (3 HSPs)
chr3 (188-363)||(53016760-53016935)
chr3 (57-182)||(25594371-25594496)
chr3 (109-176)||(47945828-47945895)
[»] chr6 (5 HSPs)
chr6 (188-363)||(5241486-5241661)
chr6 (188-314)||(17451432-17451558)
chr6 (84-176)||(33968482-33968574)
chr6 (188-273)||(14826155-14826240)
chr6 (132-176)||(13098486-13098530)
[»] chr1 (10 HSPs)
chr1 (187-363)||(16503278-16503454)
chr1 (188-314)||(24432383-24432509)
chr1 (188-316)||(29991240-29991368)
chr1 (76-166)||(49820265-49820355)
chr1 (83-180)||(17033706-17033803)
chr1 (82-174)||(50589072-50589164)
chr1 (84-176)||(38544605-38544696)
chr1 (80-176)||(19598758-19598854)
chr1 (83-176)||(42374286-42374379)
chr1 (80-172)||(46603510-46603599)
[»] chr4 (6 HSPs)
chr4 (188-351)||(20669701-20669864)
chr4 (80-176)||(12296297-12296393)
chr4 (80-169)||(46487400-46487489)
chr4 (82-176)||(21983687-21983780)
chr4 (80-176)||(28966989-28967085)
chr4 (107-176)||(46698674-46698743)
[»] chr2 (8 HSPs)
chr2 (16-176)||(22884930-22885092)
chr2 (79-176)||(33788494-33788591)
chr2 (83-144)||(24308593-24308654)
chr2 (78-169)||(27740104-27740195)
chr2 (82-176)||(25504773-25504867)
chr2 (80-174)||(4472046-4472140)
chr2 (80-169)||(43816319-43816408)
chr2 (107-169)||(3745464-3745526)
[»] chr8 (2 HSPs)
chr8 (84-176)||(17720573-17720665)
chr8 (82-176)||(15906809-15906903)
[»] scaffold1613 (1 HSPs)
scaffold1613 (84-176)||(884-975)
[»] chr5 (5 HSPs)
chr5 (80-176)||(39184048-39184144)
chr5 (82-176)||(8731040-8731134)
chr5 (84-162)||(24072134-24072212)
chr5 (80-167)||(27713200-27713288)
chr5 (78-176)||(23426455-23426553)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 43 - 363
Target Start/End: Original strand, 12546233 - 12546553
Alignment:
Q  43 tacaaaaaccaattaaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaag 142  Q
    ||||||||||| |||||||||||||||| ||  | ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12546233 tacaaaaaccacttaaaaacgaaatccataacactcgtcgccactacttatcccaaaataacacccctctaaatgaaacactccgtcgtcatcacctaag 12546332  T
Q  143 ctgaaccactattctaaagatcaatcaacttccatcacatgtcgacatgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaa 242  Q
    |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12546333 ctgagccactattctaaagatcaatcaacttccaccacatctcgacatgttgtcttttggaaacatataatgttttcttccttgtcaaagtttaagtcaa 12546432  T
Q  243 ttccgtcaacttccactcctctttttactaaccccgatgtcgactattttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtga 342  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12546433 ttccctcaacttccactcctctttttactaaccccgatgtcggctattttcctagtgacacgtatgcaggttttgagatatatgcatgttcttctagtga 12546532  T
Q  343 gcttccaacctcttctgatgt 363  Q
    |  |||||||||||| |||||    
T  12546533 gtatccaacctcttccgatgt 12546553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 9107378 - 9107298
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaag 161  Q
    |||||||||||||||||||||||||  ||||||||||||||||| || || |||||||| ||| ||| ||||||||||||||    
T  9107378 tcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgagccactattctaaag 9107298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 13312056 - 13311968
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 169  Q
    |||||||||| || |||||||||| |  ||||||||||||||||| |||| || |||||||||||||  |||||||||||| ||||||||    
T  13312056 tcgccactacacaccccaaaataa-acacctctaaatgaaacacttcgtcctcgtcacctaagctgagacactattctaaatatcaatca 13311968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 22567909 - 22568063
Alignment:
Q  17 acatcaccacctaaaacagactcttatacaaaa--accaattaaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctctaa 114  Q
    |||||||||||||||||||||||||  || |||  |||| | |||||||  ||||| ||    | || ||||||||||||| ||||||||| ||||  ||    
T  22567909 acatcaccacctaaaacagactctttcacgaaacaaccactgaaaaacggtatccataaccagcatcaccactactcatccaaaaataacaccccttaaa 22568008  T
Q  115 atgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 169  Q
    |||||||||   ||| || ||||| ||||||   |||||||||||||||||||||    
T  22568009 atgaaacaccatgtcctcgtcaccaaagctggggcactattctaaagatcaatca 22568063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 9427962 - 9428006
Alignment:
Q  76 cccgtcgccactactcatcccaaaataacatccctctaaatgaaa 120  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  9427962 cccgtcgtcactactcatccctaaatagcatccctctaaatgaaa 9428006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 188 - 363
Target Start/End: Complemental strand, 53016935 - 53016760
Alignment:
Q  188 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 287  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||     
T  53016935 catgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttccactcctctctttactaaccctgatgttgacc 53016836  T
Q  288 attttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtgagcttccaacctcttctgatgt 363  Q
     |||||||||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  53016835 tttttcctagtgacacacatgcaggttcttagacatatgcatgttcttctagtgagcttccaacctcttctgatgt 53016760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 25594371 - 25594496
Alignment:
Q  57 aaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattc 156  Q
    |||||||| |||||||   ||| ||||||||||||||||||| ||||||  |||||||||| ||||||||||| || || || ||| ||| |||||||||    
T  25594371 aaaaacgatatccaaaccacccatcgccactactcatcccaagataacactcctctaaatggaacactccgtcctcgtctccaaagttgagccactattc 25594470  T
Q  157 taaagatcaatcaacttccatcacat 182  Q
    ||||||||||||  |||||| |||||    
T  25594471 taaagatcaatccgcttccaccacat 25594496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 47945895 - 47945828
Alignment:
Q  109 ctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    ||||||||||||||||||  |  |||| ||||| |||| ||||||||| |||||||||| ||||||||    
T  47945895 ctctaaatgaaacactccagctgcatcccctaaactgagccactattcaaaagatcaattaacttcca 47945828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 188 - 363
Target Start/End: Complemental strand, 5241661 - 5241486
Alignment:
Q  188 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 287  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||     
T  5241661 catgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttccactcctctctttactaaccctgatgttgacc 5241562  T
Q  288 attttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtgagcttccaacctcttctgatgt 363  Q
     |||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||||    
T  5241561 tttttcctagtgacacgcatgcaggttctaagacatatgcaggttcttctagtgagcttccaacctcttccgatgt 5241486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 17451432 - 17451558
Alignment:
Q  188 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 287  Q
    |||||||||||||||||||||| |||||| |||||||||||||| |||   ||||||||||| |||||||||||| | ||||||||||| ||||| ||||    
T  17451432 catgttgtcttttgggaacataaaatgttctcttccttgtcaaattttgtttcaattccgtccacttccactcctttatttactaaccctgatgttgact 17451531  T
Q  288 attttcctagtgacacgtatgcaggtt 314  Q
    |||||  ||||||||| ||||||||||    
T  17451532 attttaatagtgacacatatgcaggtt 17451558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 33968482 - 33968574
Alignment:
Q  84 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||| | ||| || ||| ||| |||||||||||||||||||||| ||||||    
T  33968482 cactactcatcccaaaataacacccctctaaatgaaacactttgtccttatcgccaaagttgagccactattctaaagatcaatcagcttcca 33968574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 14826155 - 14826240
Alignment:
Q  188 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaa 273  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||| || || ||| |||| ||||| ||| ||||    
T  14826155 catgttgtcttttgggaacacataatgttctcttctttgtcaaagtttacgtcaatcccatctactaccacccctctctttgctaa 14826240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 13098486 - 13098530
Alignment:
Q  132 catcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||    
T  13098486 catcccctaagctgagccactattctaaagatcaatcatcttcca 13098530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 187 - 363
Target Start/End: Original strand, 16503278 - 16503454
Alignment:
Q  187 acatgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgac 286  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||   |||    
T  16503278 acatgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaattccgtctacttcgactcctctctttactaaccctgattctgac 16503377  T
Q  287 tattttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtgagcttccaacctcttctgatgt 363  Q
      |||||| | ||||||  ||||||||| | |||||||||||  |||||||||||||||||||||||||||||||||    
T  16503378 ctttttcccattgacacacatgcaggttctaagacatatgcagattcttctagtgagcttccaacctcttctgatgt 16503454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 24432383 - 24432509
Alignment:
Q  188 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 287  Q
    |||||||||||||||||||||| |||||| |||||||||||||| |||   ||||||||||| |||||||||||| | ||||||||||| ||||| ||||    
T  24432383 catgttgtcttttgggaacataaaatgttctcttccttgtcaaattttgtttcaattccgtccacttccactcctttatttactaaccctgatgttgact 24432482  T
Q  288 attttcctagtgacacgtatgcaggtt 314  Q
    |||||  ||||||||| ||||||||||    
T  24432483 attttaatagtgacacatatgcaggtt 24432509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 316
Target Start/End: Original strand, 29991240 - 29991368
Alignment:
Q  188 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 287  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||||||||| || || |  || |||||||||||| | ||||| |||| |||||| |||     
T  29991240 catgttatcttttgcgaacatataatgttctcttccttatcaaagtttaactcgatcctttctacttccactcctttctttacgaacctcgatgttgacc 29991339  T
Q  288 attttcctagtgacacgtatgcaggtttt 316  Q
     |||||||||| ||||  |||||||||||    
T  29991340 tttttcctagtaacacacatgcaggtttt 29991368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 49820355 - 49820265
Alignment:
Q  76 cccgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaa 166  Q
    ||||||||||| || |||||||||||| || |||||||||||||||||  |  ||||||||| |||| ||| |||||||||||||||||||    
T  49820355 cccgtcgccaccacacatcccaaaatatcacccctctaaatgaaacacctctacgtcatcacttaagatgagccactattctaaagatcaa 49820265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 17033803 - 17033706
Alignment:
Q  83 ccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttccatcac 180  Q
    |||||||| |||||||||||||| |||||| ||||||||||   ||| |||||||| ||| ||| ||| |||||||||||||||||| ||| ||||||    
T  17033803 ccactactaatcccaaaataacacccctctgaatgaaacaccatgtcctcatcaccaaagttgagccattattctaaagatcaatcagcttgcatcac 17033706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 50589072 - 50589164
Alignment:
Q  82 gccactactcatcccaaaa-taacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttc 174  Q
    ||||||||||| ||||||| ||||  |||||||||||||||||||||||  ||||||||||| ||| | ||||||| |||||||||||||||||    
T  50589072 gccactactcaacccaaaaataacc-ccctctaaatgaaacactccgtctgcatcacctaagttgagctactattccaaagatcaatcaacttc 50589164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 38544605 - 38544696
Alignment:
Q  84 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||||||||||  ||||| ||||||||||||||||| ||| | |||||| | || |||| |||||||||||||||||||||| ||||||    
T  38544605 cactactcatcccaacgtaacacccctctaaatgaaacac-ccgccctcatcagcaaaactgagccactattctaaagatcaatcatcttcca 38544696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 19598854 - 19598758
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactc-cgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    ||||||||||||| |||||||||||  ||||||||| |||||||||  | ||| ||| | |||| ||| ||  |||||||||||||||||||||||||    
T  19598854 tcgccactactcaacccaaaataacccccctctaaaagaaacactctagccgt-atcccataagttgagccgttattctaaagatcaatcaacttcca 19598758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 42374379 - 42374286
Alignment:
Q  83 ccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||| | ||||| |||||| |||| |||| | ||| |  |||| |||||||| ||| ||| |||||||||||||||||||||| ||||||    
T  42374379 ccactactgaacccaagataacacccctataaaagcaactcctcgtcctcatcaccaaagttgagccactattctaaagatcaatcagcttcca 42374286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 46603599 - 46603510
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaact 172  Q
    |||||||||||| ||||||||||||| |||||||||| ||||| |  ||| | |||||| ||| ||| |||  |||||| |||||||||||||    
T  46603599 tcgccactactcttcccaaaataacacccctctaaat-aaacattatgtccttatcaccaaagttgagcca--attctacagatcaatcaact 46603510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 188 - 351
Target Start/End: Complemental strand, 20669864 - 20669701
Alignment:
Q  188 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 287  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || |  |||||||| ||||||||||| |||||||| |    
T  20669864 catgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaatcccgtctacctatactcctctctttactaaccctgatgtcgatt 20669765  T
Q  288 attttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtgagcttccaac 351  Q
     ||||||||||||||   ||||||||| ||||||||||||| |||||||||||||| |||||||    
T  20669764 tttttcctagtgacaaacatgcaggttctgagacatatgcaggttcttctagtgagtttccaac 20669701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 12296393 - 12296297
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||| ||| || ||||||    
T  12296393 tcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttgagccactactctaaagaacaaccagcttcca 12296297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 46487489 - 46487400
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 169  Q
    |||||||||||||||| ||||||| ||||||||||| ||||| ||||||| ||| ||||||| || | |||||||| |||||||||||||    
T  46487489 tcgccactactcatcctaaaataaaatccctctaaacgaaacgctccgtcctcaacacctaaactaagccactattataaagatcaatca 46487400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 21983687 - 21983780
Alignment:
Q  82 gccactactcatcccaaaataacatccctctaaatgaaacactcc-gtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    ||||||||||| |||||||||||  || | ||||||||||||||| |||| |||| ||||||||||  ||||||||||||||||||||||||||||    
T  21983687 gccactactcaacccaaaataacc-ccttttaaatgaaacactccagtcg-catcccctaagctgagtcactattctaaagatcaatcaacttcca 21983780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 28967085 - 28966989
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||  |  | || | |||| ||| ||||||||||| |||||||||| ||||||    
T  28967085 tcgccactactcagcccaaaataacctccctttaaatgaaacactccagccgcgtcccataagatgagccactattctagagatcaatcagcttcca 28966989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 46698674 - 46698743
Alignment:
Q  107 ccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||||||||||||   ||| |||||||| |||| || |||||||||||||||| ||||| ||||||    
T  46698674 ccctctaaatgaaacaccttgtcctcatcaccaaagccgagccactattctaaagatgaatcagcttcca 46698743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 22884930 - 22885092
Alignment:
Q  16 aacatcaccacctaaaacagactcttatacaaaa--accaattaaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctcta 113  Q
    |||||||||||||||||||||||| |  || |||  |||| | | |||||||||||| ||  |||||||||||| ||  ||||||||||||| |||||||    
T  22884930 aacatcaccacctaaaacagactccttcacgaaacgaccactgacaaacgaaatccataacccccgtcgccactgcttgtcccaaaataacacccctcta 22885029  T
Q  114 aatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||||| ||||| |||||||||||   || ||||||||||| |||||||||||||||||    
T  22885030 aatgaaacacaccgtcctcatcacctaaaacgagccactattctatagatcaatcaacttcca 22885092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 33788494 - 33788591
Alignment:
Q  79 gtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  33788494 gtcgccactactcgtcccaaaataacacccctctaaatgaaacaccccgtcctcatcacctaagctgagccactaatctatagatcaatcagcttcca 33788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 24308593 - 24308654
Alignment:
Q  83 ccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagct 144  Q
    ||||||||||||||||||||||| |||||||||| ||||||| | || ||||||||||||||    
T  24308593 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctaagct 24308654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 27740195 - 27740104
Alignment:
Q  78 cgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 169  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||   ||| |||   |||||| ||| ||||||||| | ||||||||||    
T  27740195 cgtcgccactactcatcccagaataacacccctctaaatgaaacacattgtcctcaatgcctaagttgagccactattccatagatcaatca 27740104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 25504773 - 25504867
Alignment:
Q  82 gccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||||||||||||||||||| ||||||||||||||||     || |||||||| ||| ||| || |||||||||| |||||| | ||||||    
T  25504773 gccactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatcaccaaagttgagccgctattctaaatatcaattagcttcca 25504867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 4472140 - 4472046
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttc 174  Q
    |||||||||  || |||||||||||| |||||||||| ||  || ||  |||| |||| |||| ||| |||||||||||||||||||||| ||||    
T  4472140 tcgccactagacaacccaaaataacacccctctaaataaattacccctacgtcgtcacttaagttgagccactattctaaagatcaatcagcttc 4472046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 43816319 - 43816408
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 169  Q
    |||||||||||| |||| ||| ||||  ||||||||||||||||   ||| |||||||  || | || ||||||||||||||||||||||    
T  43816319 tcgccactactcctcccgaaaaaacactcctctaaatgaaacaccttgtcctcatcactaaaacagagccactattctaaagatcaatca 43816408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 3745526 - 3745464
Alignment:
Q  107 ccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 169  Q
    |||||||||||||||||   ||| || ||||| | ||||| ||||||||||||||||||||||    
T  3745526 ccctctaaatgaaacaccttgtcctcgtcaccgatgctgagccactattctaaagatcaatca 3745464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 17720573 - 17720665
Alignment:
Q  84 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    ||||||||| |||||||  | | ||||||||||||||||||||||| ||||||| |||  ||| |||||||||||||||||||||||||||||    
T  17720573 cactactcaccccaaaaataaacccctctaaatgaaacactccgtcctcatcacttaatttgagccactattctaaagatcaatcaacttcca 17720665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 15906903 - 15906809
Alignment:
Q  82 gccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||||||||||||||||||| | |||||||| |||||| | ||| |||||||||||| ||| | ||||||||| | |||||||| ||||||    
T  15906903 gccactactcatcccaaaataacacctctctaaataaaacacactgtcctcatcacctaagttgagctactattctataaatcaatcatcttcca 15906809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 884 - 975
Alignment:
Q  84 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||||||||||  ||||| ||||||||||||||||| ||| | |||||| | || |||| |||||||||||||||||||||| ||||||    
T  884 cactactcatcccaacgtaacacccctctaaatgaaacac-ccgccctcatcagcaaaactgagccactattctaaagatcaatcatcttcca 975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 39184048 - 39184144
Alignment:
Q  80 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    ||||||||||| |||||||||||||| |||||| || ||| |||   ||| ||| |||| ||||||| ||||||||| |||||||||||| ||||||    
T  39184048 tcgccactacttatcccaaaataacacccctcttaacgaatcaccatgtcctcaacaccaaagctgagccactattcaaaagatcaatcagcttcca 39184144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 8731134 - 8731040
Alignment:
Q  82 gccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    |||||||||||||||||||||||| ||||||||||||||||     || |||||||| ||| ||| || |||||||||| |||||| | ||||||    
T  8731134 gccactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatcaccaaagttgagccgctattctaaatatcaattagcttcca 8731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 24072134 - 24072212
Alignment:
Q  84 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaaga 162  Q
    ||||||||||||||||||||||| |||||||||||||||| || || || ||||  ||| |||  ||||||||||||||    
T  24072134 cactactcatcccaaaataacattcctctaaatgaaacaccccttcctcgtcacgaaagttgagtcactattctaaaga 24072212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 27713288 - 27713200
Alignment:
Q  80 tcgccactactcatcccaaaataacatccc-tctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaat 167  Q
    ||||||||||||| |||||||||||  ||| |||||||||||||||||  |  |||| | |||| ||| ||||||||||||||||||||    
T  27713288 tcgccactactcaacccaaaataaccccccctctaaatgaaacactccagccgcatcccataagttgagccactattctaaagatcaat 27713200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 23426553 - 23426455
Alignment:
Q  78 cgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 176  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||   |||  || | |||||||||| |||| |||| |  ||||||||| ||||||    
T  23426553 cgtcgccactactcatccccagataacaaccctctaaatgaaacacattgtccgcaactcctaagctgagccacaattccatggatcaatcagcttcca 23426455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University