View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9369_low_25 (Length: 370)
Name: NF9369_low_25
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_25 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 33759076 - 33759432
Alignment:
| Q |
14 |
tggacatcaatgaggtgtagattaattcttcaagcatcattttgtatgttgtgttgttgaatcaaaaccctgtgttggatctcttctctatctgtttgat |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | |
|
|
| T |
33759076 |
tggacaacaatgaggtgtagattaattcttcaagcatcattttgtatgttgtgttgttgaatcaaaaccctgcgttggatctcttctctatttgtttggt |
33759175 |
T |
|
| Q |
114 |
gtttattcatttaatgactacgtgggtttgtctgtgaaatctatttttagttatagttggtctaaaaaattcatcacacaatttctttatcgtgtgtgac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33759176 |
gtttattcatttaatgactacgtgggtttgtctgtgaaatctatttttagttatagttggtctaaaaaattcatcacacaatttctttatcgtgtgtgac |
33759275 |
T |
|
| Q |
214 |
cagtgttcataccaatacttgtatccgtcttcacatttattttattgcgttaatgcatgtaacttatgaacaatgtatcttttctaatgaaattttggtt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33759276 |
cagtgttcataccaatacttgtatccgtcttcacatttattttattgcgttaatgcatgtaacttatgaacaatgtatcttttctaatgaaattttggtt |
33759375 |
T |
|
| Q |
314 |
ttaattgataagtataaatgttagtgactttctagttgtaacaaaccataagtcaaa |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33759376 |
ttaattgataagtataaatgttagtgactttctagttgtaacaaaccataagtcaaa |
33759432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University