View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9369_low_27 (Length: 368)
Name: NF9369_low_27
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 33019683 - 33019370
Alignment:
| Q |
1 |
ggaatcaaagagaactaacttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgttttttagcaaattttgga |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33019683 |
ggaatcaaagagaactaactcgtctaagtcgttgcgagagcttagcatgagacgatggcgagtgtttgacatgcaaagatgttttttagcaaattttgga |
33019584 |
T |
|
| Q |
101 |
tcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaa |
200 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33019583 |
tcagaaactaatgaattgactgacttgcagaggcatcgaagttgaataaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaa |
33019484 |
T |
|
| Q |
201 |
gagtgggtagtggcggagttgttgttgttagggttccggtggaggtaagagtgagttgatgcgtctttgttacgattgtttcctccatgagtgatgaaaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33019483 |
gagtgggtagtggcggagttgttgttgttagggttccggtgaaggtaagagtgagttgatgcgtctttgttacgattgtttcctccatgagtgatgaaaa |
33019384 |
T |
|
| Q |
301 |
aggaagaggataaa |
314 |
Q |
| |
|
|||||||||||||| |
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|
| T |
33019383 |
aggaagaggataaa |
33019370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 33026080 - 33025815
Alignment:
| Q |
1 |
ggaatcaaagagaactaacttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgttttttagcaaattttgga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||| ||||| ||| |
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| T |
33026080 |
ggaatcaaagagaactaactcgtctaactcgttggtagagcttagcatgagacggtggtgcgtgtttgacatgcgaagatgtttttaagcgaattt-gga |
33025982 |
T |
|
| Q |
101 |
tcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaa |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33025981 |
tcagaaactaacgaattgaatgacttgcataggcatcgaagttgaatgaggagttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaa |
33025882 |
T |
|
| Q |
201 |
gagtgggtagtggcggagttgttgttgttagggttccggtggaggtaagagtgagttgatgcgtctt |
267 |
Q |
| |
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|||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33025881 |
gagtaggtagtggatgagcggttgtagttagggttccggtggaggtaagagtgagttgatgcgtctt |
33025815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 33037577 - 33037364
Alignment:
| Q |
1 |
ggaatcaaagagaactaacttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgttttttagcaaattttgga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| ||||||| | ||| | ||||||||||||| ||||||||| ||||| ||||| ||| |
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|
| T |
33037577 |
ggaatcaaagagaactaactcgtctaagtcgttattagagcttaacatgagatggtggcgcgtgtttgacatgcgaagatgtttcttagcgaatttagga |
33037478 |
T |
|
| Q |
101 |
tcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaa |
200 |
Q |
| |
|
||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| || |||| |
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| T |
33037477 |
tcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttcagcgacgagatcaaacggaa |
33037378 |
T |
|
| Q |
201 |
gagtgggtagtggc |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
33037377 |
gagtgggtagtggc |
33037364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 295
Target Start/End: Complemental strand, 33023552 - 33023377
Alignment:
| Q |
113 |
gaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtg |
212 |
Q |
| |
|
|||||||| |||||||| || ||| ||||||||| ||||| ||| || |||| ||| || || |||||||| | |||||| ||||||||||| | ||||| |
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|
| T |
33023552 |
gaattgaaggacttgcaaagacattgaagttgaaggaggagtttcacagggattctacaaaggatttcagcaaggagatcaaatggaagagttgttagtg |
33023453 |
T |
|
| Q |
213 |
gcggagttgttgttgttagggttccggtggaggtaagagtgagttgatgcgtctttgttacgattgtttcctccatgagtgat |
295 |
Q |
| |
|
|||||| | ||||||||| |||| ||||||| ||| ||| || |||||||| |||||||||||||||||||||| |
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|
| T |
33023452 |
gcggagcggatgttgttagagttc-------ggtaagaatgaattgttgtatctttgttgtgattgtttcctccatgagtgat |
33023377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 27755003 - 27754828
Alignment:
| Q |
66 |
ttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggag |
165 |
Q |
| |
|
|||||| || ||| ||||| || |||||||||||||| || | ||| ||||| || ||||| |||||||||| |||||||| || | || || || || |
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|
| T |
27755003 |
ttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacagaggcatcaaagttgaagtagtaacttcacgggaag |
27754904 |
T |
|
| Q |
166 |
tctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcggagttgttgttgttagggttccggtg |
241 |
Q |
| |
|
|||| ||||| || ||||||||||||||| ||||||||| |||||||||| | || |||||||||| ||||| |
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|
| T |
27754903 |
catgcacagaatctcttcgatgagatcgaatgtaagagtgggaagtggcggaggagatgatgttagggtttcggtg |
27754828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 7443711 - 7443820
Alignment:
| Q |
98 |
ggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatg |
197 |
Q |
| |
|
|||||||||| ||| |||||||| |||| |||||||| |||||||| ||||| | ||| || || || ||||| ||||| |||| || ||||||||| | |
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|
| T |
7443711 |
ggatcagaaattaaagaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagg |
7443810 |
T |
|
| Q |
198 |
gaagagtggg |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
7443811 |
gaagagtggg |
7443820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 213
Target Start/End: Complemental strand, 12217388 - 12217241
Alignment:
| Q |
66 |
ttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggag |
165 |
Q |
| |
|
|||||| || ||||||||| | |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| |||||||| | |||||||| | |
|
|
| T |
12217388 |
ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaat |
12217289 |
T |
|
| Q |
166 |
tctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtgg |
213 |
Q |
| |
|
||| || | |||||| || | ||||| || ||||| ||||||||||| |
|
|
| T |
12217288 |
tctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg |
12217241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 9566517 - 9566582
Alignment:
| Q |
76 |
aagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaag |
141 |
Q |
| |
|
|||||||||||| || |||||||||||||||| | |||||||| |||||||||||||| ||||| |
|
|
| T |
9566517 |
aagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaag |
9566582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 7428315 - 7428439
Alignment:
| Q |
89 |
gcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatga |
188 |
Q |
| |
|
|||||||| |||||||| | ||| |||||||| |||| |||||||| ||||| |||||||| | |||||||| | ||| || | |||||| || | | |
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|
| T |
7428315 |
gcaaatttgggatcagagattaaagaattgaagcacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaa |
7428414 |
T |
|
| Q |
189 |
gatcgaatggaagagtgggtagtgg |
213 |
Q |
| |
|
|||| || ||||| ||||||||||| |
|
|
| T |
7428415 |
gatcaaacggaagcgtgggtagtgg |
7428439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 37754091 - 37754191
Alignment:
| Q |
116 |
ttgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcg |
215 |
Q |
| |
|
||||| ||||| |||||||| || ||||| | ||| | || || |||||||||||||||||||| |||| | ||||| ||||||||||| ||||||| |
|
|
| T |
37754091 |
ttgaaggacttacagaggcaccggagttgtaagagtaacttgacagggagtctgcatagaatttctgcgaccaattcgaaaggaagagtgggcagtggcg |
37754190 |
T |
|
| Q |
216 |
g |
216 |
Q |
| |
|
| |
|
|
| T |
37754191 |
g |
37754191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 24418090 - 24418235
Alignment:
| Q |
1 |
ggaatcaaagagaactaacttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgttttttagcaaattttgga |
100 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| ||| ||| |||||| |||||| | || |||||| || ||| || || || || ||||| ||| |
|
|
| T |
24418090 |
ggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttggga |
24418189 |
T |
|
| Q |
101 |
tcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaa |
146 |
Q |
| |
|
||||| | |||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
24418190 |
tcagagattaatgaattgaaggacttgcagagacagcgaagttgaa |
24418235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 25869469 - 25869541
Alignment:
| Q |
120 |
atgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatc |
192 |
Q |
| |
|
|||||||||| | ||| || ||||| ||||||| ||| | |||| ||||||||| ||||||||||||||||| |
|
|
| T |
25869469 |
atgacttgcaaatgcagcggagttgcatgaggaatttgatggggaatctgcataggatttcagcgatgagatc |
25869541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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