View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_3 (Length: 537)
Name: NF9369_low_3
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 9 - 517
Target Start/End: Original strand, 2129891 - 2130399
Alignment:
| Q |
9 |
aatgagctggtgaccagcaaatactcaaattttcataaaatgcttggtagtgctaaatatgaaagcttaatctaacataacacgataagagtatttgctg |
108 |
Q |
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| T |
2129891 |
aatgagctggtgaccagcaaatacacaaattttcataaaatgcttggtagtgctaaatatgaaagcttaatctaacataacacgataagagtatttgctg |
2129990 |
T |
|
| Q |
109 |
gttatcatatcatatataaataaaatacatagtttagatttacaaaagaggacgccgtcaagttcatgtagaacatgatagaatccttatatattaatga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2129991 |
gttatcatatcatatataaataaaatacatagtttagatttacaaaagaggacgccgtcaagttcatgtagaacatgatagaatccttatatattaataa |
2130090 |
T |
|
| Q |
209 |
taacctataacctgtaaggtggagcctagatataacctgtaaactatagtatggtaaatcactacttctttactttgtaactagaaatcacaatagtact |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2130091 |
taacctataacctgtaaggtggagcctagatataacctgtaaactatagtatggtaaatcactacttctttactttgtaactagaaatcacaatagtact |
2130190 |
T |
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| Q |
309 |
tgtctcctttaaaaggctataagagaaaaagagcttcagagaaaactaataaattcacaggacctatggtgattgatgtggcagagttcagaaagaaaag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2130191 |
tgtctcctttaaaaggctataagagaaaaagagcttcagagaaaactaataaattcacaggacctatggtgattgatgtggcagagttcagaaagaaaag |
2130290 |
T |
|
| Q |
409 |
nnnnnnnnnccaagattataacatatttaatcatggtcaactttaatttgtggaatcaggagatccatagccgtaagggtttttgctagcccaattccat |
508 |
Q |
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| T |
2130291 |
aaaaaaaacccaagatcataacatatttaatcatggtcaactttaatttgtggaatcaggagatccatagccgtaagggtttttgctagcccaattccat |
2130390 |
T |
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| Q |
509 |
tgatcacgg |
517 |
Q |
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| T |
2130391 |
tgatcacgg |
2130399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 112 - 402
Target Start/End: Original strand, 2125345 - 2125637
Alignment:
| Q |
112 |
atcatatcatatataaataaaatacatagtttagatttacaaaagaggacgccgtcaagttcatgtagaacatgatagaatccttatatattaatgataa |
211 |
Q |
| |
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|||||||| |||| ||||||||| |||||||||||||||||| |||| ||||||| |||||||| ||||| | |||| |||||| ||| |||| |
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| T |
2125345 |
atcatatcgtatacaaataaaatctgtagtttagatttacaaaacaggaagccgtcatgttcatgtcgaacacaaaagaacccttat-cctta--tataa |
2125441 |
T |
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| Q |
212 |
cctataacctgtaaggtggagcctagatataacctgtaaactatagtatg------gtaaatcactacttctttactttgtaactagaaatcacaat--- |
302 |
Q |
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|||||||||||||| ||||| ||||||||||||| |||| |||||| || |||||||||||||| ||||| ||||||||||||||||||| |
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| T |
2125442 |
-ctataacctgtaagatggagtctagatataacctataaattatagtctggtaaatgtaaatcactacttatttac--tgtaactagaaatcacaatagt |
2125538 |
T |
|
| Q |
303 |
---agtacttgtctcctttaaaaggctataagagaaaaagagcttcagagaaaactaataaattcacaggacctatggtgattgatgtggc-agagttca |
398 |
Q |
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|||||||||| |||| ||| || ||| ||||||| ||||| || ||||||||| | ||||||||||||||||||||| |||||| |||||||| |
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| T |
2125539 |
agaagtacttgtcaccttaaaatcgc--taaaagaaaaatagctttagtgaaaactaaca---tcacaggacctatggtgattgttgtggcaagagttca |
2125633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 517
Target Start/End: Original strand, 2125685 - 2125751
Alignment:
| Q |
451 |
ttaatttgtggaatcaggagatccatagccgtaagggtttttgctagcccaattccattgatcacgg |
517 |
Q |
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| T |
2125685 |
ttaatctgtggaatccggaggtccatagccgtaagggtttttgctagcccaattccattgatcacgg |
2125751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 473 - 517
Target Start/End: Complemental strand, 42032087 - 42032043
Alignment:
| Q |
473 |
ccatagccgtaagggtttttgctagcccaattccattgatcacgg |
517 |
Q |
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| T |
42032087 |
ccatagccataagggtttttgctagcccaattccattgatcacgg |
42032043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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