View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_32 (Length: 343)
Name: NF9369_low_32
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 44834505 - 44834828
Alignment:
| Q |
1 |
gtgttgctatctctaggaggtggtgccggaagctactctctttcctcagctgatgatgccacgcaggttgcaaattacctatggaacaatttcttgggtg |
100 |
Q |
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| T |
44834505 |
gtgttgctatctctcggaggtggtgccggaagctactctctttcctcagctgatgatgccacgcaggttgcaaattacctatggaacaatttcttgggtg |
44834604 |
T |
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| Q |
101 |
gcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaagctggtggtgaacactatgatgaccttgcaagagcact |
200 |
Q |
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| T |
44834605 |
gcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaagctggtggtgaacactatgatgaccttgcaagagcact |
44834704 |
T |
|
| Q |
201 |
taatgcttttagctcacaaaggagagtttacttgtctgcagcacctcaatgtcctttccctgatgctcatttggattcggctattaataccggtttattt |
300 |
Q |
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| T |
44834705 |
taatggttttagctcacaaaggagagtttacttgtctgcagcacctcaatgtcctttccctgatgctcatttggattcggctattaataccggtttattt |
44834804 |
T |
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| Q |
301 |
gattatgtgtgggttcagttttat |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
44834805 |
gattatgtgtgggttcagttttat |
44834828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 44817148 - 44817474
Alignment:
| Q |
1 |
gtgttgctatctctaggaggtggtgccggaagctactctctttcctcagctgatgatgccacgcaggttgcaaattacctatggaacaatttcttgggtg |
100 |
Q |
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| T |
44817148 |
gtgttgctctctatcggaggtggcactggaagctactctctctactcgtcttacgacgcctcacagcttgcaaactacctatggaacaatttcttgggtg |
44817247 |
T |
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| Q |
101 |
gcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaagctggtggtgaacactat---gatgaccttgcaagagc |
197 |
Q |
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| T |
44817248 |
gcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaagctggtgatggtcaatattgggatgaacttgcaaaagc |
44817347 |
T |
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| Q |
198 |
acttaatgcttttagctcacaaaggagagtttacttgtctgcagcacctcaatgtcctttccctgatgctcatttggattcggctattaataccggttta |
297 |
Q |
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|||| ||| ||||| ||||| | || |||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| || |||||| |
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| T |
44817348 |
acttgatgggtttagttcacagaagaaagtttatttgtctgcagcaccacaatgtccttaccctgatgctcatttggattcagctattaagactggttta |
44817447 |
T |
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| Q |
298 |
tttgattatgtgtgggttcagttttat |
324 |
Q |
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| T |
44817448 |
tttgattatgtgtgggttcagttttat |
44817474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 44838060 - 44838142
Alignment:
| Q |
80 |
tatggaacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaa |
162 |
Q |
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| T |
44838060 |
tatggaacactttcttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa |
44838142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 44849147 - 44849229
Alignment:
| Q |
80 |
tatggaacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaa |
162 |
Q |
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||||||||| |||||||||||||||||||| ||||||||| || ||||||||||| || ||||| || |||||||| |||||| |
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| T |
44849147 |
tatggaacactttcttgggtggcacgtcatattcaagaccatttggtgatgctgtgttagatggcatagattttgacattgaa |
44849229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 17571098 - 17570953
Alignment:
| Q |
59 |
ccacgcaggttgcaaattacctatggaacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatat |
158 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17571098 |
ccacgcagcttgcaaactacctatggaacaatttcttgggtggcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatat |
17570999 |
T |
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| Q |
159 |
tgaagctgg---tggtgaacactatgatgaccttgcaagagcactt |
201 |
Q |
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| T |
17570998 |
tgaagctggtgatggtgaacattgggatgaacttgcaaaagcactt |
17570953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 29617412 - 29617320
Alignment:
| Q |
232 |
ttgtctgcagcacctcaatgtcctttccctgatgctcatttggattcggctattaataccggtttatttgattatgtgtgggttcagttttat |
324 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| ||||| ||||| |||| ||||||||||| | ||||||||||||||| ||||||||||||||| |
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| T |
29617412 |
ttgtctgcagcaccacaatgcccttacccaaatgcttatttgaattcagctattaatactgatttatttgattatgtttgggttcagttttat |
29617320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 23396473 - 23396386
Alignment:
| Q |
237 |
tgcagcacctcaatgtcctttccctgatgctcatttggattcggctattaataccggtttatttgattatgtgtgggttcagttttat |
324 |
Q |
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| T |
23396473 |
tgcagcgccacaatgtccttactcttatgcttatttggattcagctattaatactggtttattagattatgtttaggttcatttttat |
23396386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 47980207 - 47980246
Alignment:
| Q |
124 |
ggtgatgctgttttggatggaattgattttgatattgaag |
163 |
Q |
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| T |
47980207 |
ggtgatgctgttttggatggcattgattttgacattgaag |
47980246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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