View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_34 (Length: 327)
Name: NF9369_low_34
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 135 - 294
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
135 |
acatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
234 |
Q |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
235 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
294 |
Q |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 5051508 - 5051458
Alignment:
| Q |
30 |
caatataacaagataaa-tcatccttatattcgagaattgttggattttca |
79 |
Q |
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| T |
5051508 |
caatataacaagataaaatcatccttatattcgagaattgttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 52 - 294
Target Start/End: Original strand, 51273883 - 51274120
Alignment:
| Q |
52 |
cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcctcacgaaagat |
151 |
Q |
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| T |
51273883 |
cttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagat |
51273982 |
T |
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| Q |
152 |
tggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaaccttattattttatagca |
251 |
Q |
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| T |
51273983 |
tggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccgtgtactagaaggctttgtttgtgaacctta-----ttatagca |
51274076 |
T |
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| Q |
252 |
ttgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
294 |
Q |
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| T |
51274077 |
tcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 14907912 - 14908035
Alignment:
| Q |
52 |
cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcctcacgaaagat |
151 |
Q |
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| T |
14907912 |
cttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcctcacaaaagat |
14908011 |
T |
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| Q |
152 |
tggatcaaacttccactccctcca |
175 |
Q |
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| T |
14908012 |
aggatcaaatttccactccctcca |
14908035 |
T |
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