View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_35 (Length: 326)

Name: NF9369_low_35
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_35
NF9369_low_35
[»] chr7 (6 HSPs)
chr7 (10-324)||(18395911-18396234)
chr7 (65-124)||(27073633-27073692)
chr7 (65-124)||(27204621-27204680)
chr7 (13-118)||(40808414-40808521)
chr7 (28-77)||(23565313-23565363)
chr7 (31-111)||(36146678-36146759)
[»] chr8 (8 HSPs)
chr8 (13-132)||(11712240-11712361)
chr8 (30-111)||(32902442-32902524)
chr8 (30-108)||(29796578-29796656)
chr8 (82-163)||(7597380-7597462)
chr8 (82-132)||(8153572-8153622)
chr8 (55-108)||(3232092-3232145)
chr8 (55-132)||(8863333-8863409)
chr8 (56-104)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (13-132)||(4560904-4561025)
chr2 (55-99)||(28671797-28671841)
chr2 (30-104)||(36773387-36773462)
chr2 (17-100)||(11067134-11067219)
[»] chr4 (7 HSPs)
chr4 (13-170)||(21704065-21704225)
chr4 (55-170)||(3739397-3739511)
chr4 (17-104)||(6677306-6677394)
chr4 (30-111)||(36463657-36463738)
chr4 (65-108)||(4587792-4587835)
chr4 (77-110)||(43208174-43208207)
chr4 (13-99)||(37755162-37755250)
[»] scaffold0129 (1 HSPs)
scaffold0129 (31-111)||(19854-19933)
[»] chr1 (4 HSPs)
chr1 (30-104)||(8871315-8871390)
chr1 (60-116)||(2263271-2263327)
chr1 (30-106)||(28265821-28265898)
chr1 (82-130)||(25116407-25116455)
[»] chr5 (1 HSPs)
chr5 (55-129)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (55-129)||(21156738-21156811)
chr3 (55-108)||(40519479-40519532)
chr3 (55-108)||(2075350-2075403)
chr3 (60-104)||(9666754-9666797)
chr3 (55-111)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 324
Target Start/End: Complemental strand, 18396234 - 18395911
Alignment:
Q  10 acatcaccaaagacattcaacctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataa 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18396234 acatcaccaaagacattcaacctaaagttacctccttgatatccaaagtttctctctcttgaagctctacttaaaacatgaagaatgaagtcttatataa 18396135  T
Q  110 tgcacaagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaa 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396134 tgcacaagttccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaa 18396035  T
Q  210 tttttcgaatcaaa---------accttaaccaaaatcgcgtcacgatttttgcaaatcacggcccaatttttgtcgatattttagacaaatttcaacat 300  Q
    ||||||||||||||         ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  18396034 tttttcgaatcaaaacctccaaaaccttaaccaaaatctcgtcacgatttttgcaaatcgcggcccaatttttgtcgattttttagacaaatttcaacat 18395935  T
Q  301 ttgttttccttgatgatgtccatc 324  Q
    |||||||||||||| ||| |||||    
T  18395934 ttgttttccttgattatggccatc 18395911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 27073692 - 27073633
Alignment:
Q  65 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 124  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27073692 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27073633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 27204621 - 27204680
Alignment:
Q  65 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 124  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27204621 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 40808521 - 40808414
Alignment:
Q  13 tcaccaaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataat 110  Q
    |||||||||||| |||||| ||||||||||||||| ||| | | |||||| || ||||| |||  ||||||| |||||||||||||||||  ||||||      
T  40808521 tcaccaaagacactcaaccctaaagttacctcctttgattctctaagtttatctctctttaagtcctacttataacatgaagaatgaagttctatataga 40808422  T
Q  111 gcacaagt 118  Q
    ||||||||    
T  40808421 gcacaagt 40808414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 23565313 - 23565363
Alignment:
Q  28 aacctaaagttacctcctt-gatacccaaagtttctcactcttgaagctct 77  Q
    ||||||||||||||||||| |||| || ||||||||| |||||||||||||    
T  23565313 aacctaaagttacctcctttgatatcccaagtttctctctcttgaagctct 23565363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 36146678 - 36146759
Alignment:
Q  31 ctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 111  Q
    |||||||||||||||| |||  || |||||| || ||||||||||||| |  |||| ||||||||||||| |||| ||||||    
T  36146678 ctaaagttacctcctttgatttcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagccttaaataatg 36146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 11712240 - 11712361
Alignment:
Q  13 tcaccaaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataat 110  Q
    |||||||||||| |||||| |||||||||||| || ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||  |||||||| |    
T  11712240 tcaccaaagacactcaaccctaaagttacctcatttgataccctaagtttctctctcttgaagctctacctaaaacataaagaatgaaaccttatatagt 11712339  T
Q  111 gcacaagtcccgagaaaatcgt 132  Q
    ||||| ||||| ||||||||||    
T  11712340 gcacatgtcccaagaaaatcgt 11712361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 32902442 - 32902524
Alignment:
Q  30 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 111  Q
    |||||||||||||| | ||||  || ||||||||| |||||||||| || || ||||||||||||||||||||||||| ||||    
T  32902442 cctaaagttacctcatctgatttcccaagtttctctctcttgaagccctcctcaaaacatgaagaatgaagtcttatacaatg 32902524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 29796578 - 29796656
Alignment:
Q  30 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 108  Q
    ||||||||||||||||| |||  |  ||||||||| ||||||||| ||| || |||||||||||||||||| ||||||||    
T  29796578 cctaaagttacctcctttgatttctcaagtttctctctcttgaag-tctcctcaaaacatgaagaatgaagccttatata 29796656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 7597462 - 7597380
Alignment:
Q  82 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaa-tcgtatcacaattttcactaattgtgccacgattt 163  Q
    |||||||||||||||||| |||||||| ||| ||| || |||||||| | ||  | | |||||||| ||||||||||||||||    
T  7597462 aaaacatgaagaatgaagccttatatagtgctcaaatctcgagaaaaattgtgccccgattttcaccaattgtgccacgattt 7597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 8153622 - 8153572
Alignment:
Q  82 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 132  Q
    |||||||||||||||||| ||| ||||||| |||||  |||||||||||||    
T  8153622 aaaacatgaagaatgaagccttttataatgtacaagatccgagaaaatcgt 8153572  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 3232092 - 3232145
Alignment:
Q  55 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 108  Q
    ||||||||  ||||| | |||||||| |||||||||||||||||| ||||||||    
T  3232092 aagtttctttctcttaatgctctactcaaaacatgaagaatgaagccttatata 3232145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 8863409 - 8863333
Alignment:
Q  55 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 132  Q
    |||||| || |||||||||||| ||  |||||||||||||||||| |||||||| |||||| |  | |||||||||||    
T  8863409 aagtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatatagtgcacatgatctgagaaaatcgt 8863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 18141706 - 18141659
Alignment:
Q  56 agtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 104  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||    
T  18141706 agtttctctctcttgaagctctactcaaaa-atgaagaatgaagcctta 18141659  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 4561025 - 4560904
Alignment:
Q  13 tcaccaaagacattcaac-ctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataat 110  Q
    |||||||||||| ||||| ||||||||| ||||| ||||  || |||||| || ||||||||| | | || ||||||||||||||||||||||||| |||    
T  4561025 tcaccaaagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttgaagttattctaaaaacatgaagaatgaagtcttatacaat 4560926  T
Q  111 gcacaagtcccgagaaaatcgt 132  Q
    ||||||||||||||||||||||    
T  4560925 gcacaagtcccgagaaaatcgt 4560904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 28671841 - 28671797
Alignment:
Q  55 aagtttctcactcttgaagctctacttaaaacatgaagaatgaag 99  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  28671841 aagtttctctctcttgaagccctactcaaaacatgaagaatgaag 28671797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 36773462 - 36773387
Alignment:
Q  30 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 104  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||||   |||| ||||||||||||||||||    
T  36773462 cctaaagttacctcctttgatttccctagtttctctctcttgaagctctatacaaaaaatgaagaatgaagtctta 36773387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 11067219 - 11067134
Alignment:
Q  17 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagt 100  Q
    |||||||| |||||| ||||||||||||||| |||  ||  |||||||| |||||||||| || || |||| ||||||||||||||    
T  11067219 caaagacaatcaaccataaagttacctcctttgatttccctagtttctctctcttgaagccctcctcaaaaaatgaagaatgaagt 11067134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 21704065 - 21704225
Alignment:
Q  13 tcaccaaagacattcaacct-aaagttacctcctt-gatacccaaagtttctcactcttgaagc-tctacttaaaacatgaagaatgaagtcttatataa 109  Q
    ||||||||||| |||||||| ||||||||||| || |||  |  ||||||||| |||||||||| |||||  |||||||||| |||||||||||| |||     
T  21704065 tcaccaaagactttcaaccttaaagttacctcatttgatttctcaagtttctctctcttgaagcctctacacaaaacatgaaaaatgaagtcttaaatag 21704164  T
Q  110 tgcacaagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagtta 170  Q
    |||||| |||| |  ||||||||  | |||||||  ||||| |||||||||||||| ||||    
T  21704165 tgcacatgtcctgtcaaaatcgtgccccaattttacctaatcgtgccacgatttcacgtta 21704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 3739397 - 3739511
Alignment:
Q  55 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgtg 154  Q
    ||||||||| ||||||||  | |||| ||||||||||||||||||||||| |||||||||| ||||||  ||||||||  | | |||| |||  ||| ||    
T  3739397 aagtttctctctcttgaaa-tgtactcaaaacatgaagaatgaagtcttaaataatgcacatgtcccgtcaaaatcgtgcctcgatttacacacattttg 3739495  T
Q  155 ccacgatttcaagtta 170  Q
    ||||||||||| ||||    
T  3739496 ccacgatttcacgtta 3739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 6677394 - 6677306
Alignment:
Q  17 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 104  Q
    |||||||| |||||| ||||||||||||||| ||||||| || ||||||  ||||||||| ||||| |||||||||||||||||| ||||    
T  6677394 caaagacactcaaccctaaagttacctcctttgataccctaaatttctctttcttgaagc-ctactcaaaacatgaagaatgaagcctta 6677306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 36463657 - 36463738
Alignment:
Q  30 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 111  Q
    |||||||||||||||| ||||  || |||||| || |||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  36463657 cctaaagttacctcctatgatttcccaagtttttctctcttgaagctctactcaaaa-atgaagaatgaagccttaaataatg 36463738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 4587835 - 4587792
Alignment:
Q  65 ctcttgaagctctacttaaaacatgaagaatgaagtcttatata 108  Q
    ||||||||||||| || |||||||||||||||||||||| ||||    
T  4587835 ctcttgaagctctcctcaaaacatgaagaatgaagtcttttata 4587792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 43208174 - 43208207
Alignment:
Q  77 tacttaaaacatgaagaatgaagtcttatataat 110  Q
    |||| |||||||||||||||||||||||||||||    
T  43208174 tactcaaaacatgaagaatgaagtcttatataat 43208207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 37755162 - 37755250
Alignment:
Q  13 tcaccaaagacattcaa-cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaag 99  Q
    |||||||||||  |||| ||||||||||||||||| |||   | ||||||||| |||||||| |||  || ||||||||||||||||||    
T  37755162 tcaccaaagactctcaatcctaaagttacctcctttgattttccaagtttctctctcttgaaactcatctcaaaacatgaagaatgaag 37755250  T

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Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 19854 - 19933
Alignment:
Q  31 ctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 111  Q
    |||||||||||||||||||  || ||||||| | |||||||||| ||||| |||||| ||||||||||||| |||||||||    
T  19854 ctaaagttacctccttgatttcccaagtttcactctcttgaagc-ctactcaaaacaagaagaatgaagtcatatataatg 19933  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 8871315 - 8871390
Alignment:
Q  30 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 104  Q
    ||||||||||||| ||| |||| ||  |||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  8871315 cctaaagttacctgctttgatatccctagtttctctctcttgaagctctaccaaaaacatgaagaatgaagcctta 8871390  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 2263271 - 2263327
Alignment:
Q  60 tctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaa 116  Q
    |||| ||||||| |||||||  |||||||||||||||||| |||||||| |||||||    
T  2263271 tctctctcttgacgctctacacaaaacatgaagaatgaagccttatatagtgcacaa 2263327  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 28265821 - 28265898
Alignment:
Q  30 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttata 106  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||| |  |||| ||||||||||||| ||||||    
T  28265821 cctaaagttacctcctttgatttccctagtttctctctcttgaagctcttcccaaaaaatgaagaatgaagccttata 28265898  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 25116455 - 25116407
Alignment:
Q  82 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatc 130  Q
    |||||||||||||||||| |||||||| |||||| | || |||||||||    
T  25116455 aaaacatgaagaatgaagacttatatagtgcacatgacctgagaaaatc 25116407  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 5611451 - 5611524
Alignment:
Q  55 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 129  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  5611451 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 5611524  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 21156738 - 21156811
Alignment:
Q  55 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 129  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  21156738 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 21156811  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 40519479 - 40519532
Alignment:
Q  55 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 108  Q
    ||||||||| |||||||||||||||| || |||||| |||||||| ||||||||    
T  40519479 aagtttctctctcttgaagctctactcaatacatgatgaatgaagccttatata 40519532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 2075350 - 2075403
Alignment:
Q  55 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 108  Q
    ||||||||| ||||||||||   ||| |||||||||||||||||| ||||||||    
T  2075350 aagtttctctctcttgaagcctcactcaaaacatgaagaatgaagccttatata 2075403  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 9666754 - 9666797
Alignment:
Q  60 tctcactcttgaagctctacttaaaacatgaagaatgaagtctta 104  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||    
T  9666754 tctctctcttgaagctctactcaaaa-atgaagaatgaagtctta 9666797  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 37761765 - 37761820
Alignment:
Q  55 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 111  Q
    ||||| ||| |||||||||| | ||| |||||||||||||| |||||||||||||||    
T  37761765 aagttactctctcttgaagc-caactaaaaacatgaagaataaagtcttatataatg 37761820  T

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