View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9369_low_36 (Length: 321)
Name: NF9369_low_36
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 35133044 - 35133336
Alignment:
| Q |
8 |
caatgagcaactgagacatatctgcactccattcttcttcaccttctcctttgattgcagcaccagaagataccaaatactttgaccaagacactgctct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35133044 |
caatgagcaactgagacatatctgcactccattcttcttcaccttctcctttgattgcagcaccaggagataccaaatactttgaccaagacactgctct |
35133143 |
T |
|
| Q |
108 |
tttgtactcaccaagtgaaagtctcctcccagactttccactgttagaaatttgtttataccagttcaaattcttcatgtgggtcacggttatttcctcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35133144 |
tttgtactcaccaagtgaaagtctcctcccagactttccactgttagaaatttgtttataccagttcaaattcttcatgtgggtcacggttatttcctcc |
35133243 |
T |
|
| Q |
208 |
aaaaatcattaaaaattcaaccttaatttgtaagaatttttcaaaccccaaaagcagatccaaatatacccagataggaaaaacttgattttcatag |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35133244 |
aaaaatcattaaaaattcaacctc----tgtaagaatttttcaaaccccaaaagcagatccaaatatatccagataggaaaaacttgattttcatag |
35133336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 43933541 - 43933640
Alignment:
| Q |
84 |
atactttgaccaagacactgctcttttgtactcaccaagtgaaagtctcctcccagactttccactgttagaaatttgtttataccagttcaaattcttc |
183 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||||||| | || |||||||||||| ||| |||| | |||||||||| |
|
|
| T |
43933541 |
atactttgaccatgacacagctctcttgtattcacctagtgaaagtcttctcccagacctcacattgttagaaatttcttttaaccaatgcaaattcttc |
43933640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University