View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_39 (Length: 314)

Name: NF9369_low_39
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_39
NF9369_low_39
[»] chr7 (6 HSPs)
chr7 (84-303)||(47543398-47543617)
chr7 (84-201)||(4609652-4609769)
chr7 (84-239)||(10315043-10315198)
chr7 (84-239)||(31030341-31030496)
chr7 (92-210)||(17116404-17116522)
chr7 (111-208)||(38153904-38154001)
[»] chr1 (17 HSPs)
chr1 (87-303)||(32160044-32160259)
chr1 (82-248)||(15259370-15259536)
chr1 (129-230)||(26260768-26260869)
chr1 (111-215)||(27568382-27568486)
chr1 (111-241)||(27363725-27363855)
chr1 (114-223)||(44675097-44675206)
chr1 (263-303)||(1951913-1951953)
chr1 (87-181)||(38133069-38133163)
chr1 (146-188)||(9484879-9484921)
chr1 (106-210)||(12688172-12688276)
chr1 (120-188)||(25392345-25392413)
chr1 (114-204)||(4889452-4889542)
chr1 (124-198)||(27264588-27264662)
chr1 (111-204)||(6723718-6723811)
chr1 (111-164)||(10686232-10686285)
chr1 (105-210)||(48973644-48973749)
chr1 (171-235)||(36098596-36098660)
[»] chr6 (10 HSPs)
chr6 (84-303)||(32196725-32196944)
chr6 (84-243)||(7824105-7824264)
chr6 (87-209)||(11324442-11324564)
chr6 (81-214)||(17292763-17292896)
chr6 (111-230)||(18673363-18673482)
chr6 (126-184)||(9200938-9200996)
chr6 (111-230)||(5667346-5667465)
chr6 (92-210)||(34714895-34715013)
chr6 (111-204)||(2682761-2682854)
chr6 (115-188)||(7155422-7155495)
[»] chr3 (10 HSPs)
chr3 (84-303)||(4740971-4741187)
chr3 (112-209)||(14788867-14788964)
chr3 (84-248)||(13043321-13043485)
chr3 (84-248)||(13051398-13051562)
chr3 (111-223)||(20017410-20017522)
chr3 (114-230)||(47160990-47161106)
chr3 (111-223)||(6894192-6894304)
chr3 (111-204)||(25845647-25845740)
chr3 (150-183)||(33388601-33388634)
chr3 (158-210)||(6925997-6926049)
[»] chr5 (13 HSPs)
chr5 (146-303)||(16610602-16610759)
chr5 (84-303)||(31706337-31706552)
chr5 (116-243)||(29651767-29651894)
chr5 (84-236)||(704490-704642)
chr5 (84-184)||(30722538-30722638)
chr5 (84-236)||(27482646-27482798)
chr5 (139-229)||(29994645-29994735)
chr5 (111-155)||(22922506-22922550)
chr5 (123-229)||(18967864-18967970)
chr5 (111-160)||(22924159-22924208)
chr5 (111-235)||(19314979-19315103)
chr5 (158-210)||(21041995-21042047)
chr5 (123-155)||(22923149-22923181)
[»] chr2 (14 HSPs)
chr2 (150-303)||(8090506-8090659)
chr2 (84-248)||(40638766-40638930)
chr2 (114-229)||(31640241-31640356)
chr2 (84-248)||(20948080-20948244)
chr2 (111-208)||(27708189-27708286)
chr2 (111-209)||(44735977-44736075)
chr2 (114-210)||(27009200-27009296)
chr2 (1-40)||(43451291-43451330)
chr2 (168-241)||(9420722-9420795)
chr2 (117-230)||(45131107-45131220)
chr2 (114-201)||(9840768-9840855)
chr2 (115-217)||(33645830-33645932)
chr2 (123-188)||(21563423-21563488)
chr2 (114-235)||(30505717-30505838)
[»] chr4 (10 HSPs)
chr4 (93-229)||(52577965-52578101)
chr4 (105-204)||(9831377-9831476)
chr4 (84-204)||(30972395-30972515)
chr4 (111-210)||(22653286-22653385)
chr4 (111-204)||(11131194-11131287)
chr4 (158-230)||(19846574-19846646)
chr4 (120-204)||(43001717-43001801)
chr4 (111-201)||(8830949-8831039)
chr4 (114-211)||(25130441-25130538)
chr4 (120-188)||(48336968-48337036)
[»] chr8 (7 HSPs)
chr8 (111-210)||(8462514-8462613)
chr8 (123-188)||(5751992-5752057)
chr8 (120-210)||(33282823-33282913)
chr8 (82-180)||(39435484-39435582)
chr8 (111-204)||(37929106-37929199)
chr8 (144-204)||(33191210-33191270)
chr8 (170-230)||(38738483-38738543)
[»] scaffold0236 (1 HSPs)
scaffold0236 (227-303)||(19937-20009)
[»] scaffold0204 (1 HSPs)
scaffold0204 (120-188)||(24490-24558)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 84 - 303
Target Start/End: Original strand, 47543398 - 47543617
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  47543398 tttaatgtcaaagattgttcggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaatt 47543497  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 283  Q
    |||||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  47543498 atcatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 47543597  T
Q  284 tgttcttgactctgatgtcc 303  Q
    ||||||||||||||||||||    
T  47543598 tgttcttgactctgatgtcc 47543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 4609769 - 4609652
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||| ||||||| ||| | ||||  |||||||||||||||||||| | |||||||| ||||||||||||| |||||| | ||||||||||| ||||||    
T  4609769 tttaatatcaaagaatgctctgttaatcaggtggtcgataagattaaattgcttgcttatacgtggttgaaggcgaagtatatttctcttcccctcaatt 4609670  T
Q  184 atcatcagtggtggctta 201  Q
    | |||  |||||||||||    
T  4609669 accatgggtggtggctta 4609652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 84 - 239
Target Start/End: Original strand, 10315043 - 10315198
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| ||||| |||||||||  ||||| |   ||||||||| ||||||    
T  10315043 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacatggttgaaggtgaagtattcctctcttcccctcaatt 10315142  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 239  Q
    | ||   |||||||||||| | |||||  ||||| ||||| ||||||| |||||||    
T  10315143 accacgggtggtggcttagcccgtttactattttgggcataggctaagtgtttctt 10315198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 31030496 - 31030341
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| |||||||||||||||  ||||| |   ||||||||| ||||||    
T  31030496 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacgtggttgaaggtgaagtattcctctcttcccctcaatt 31030397  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 239  Q
    | ||   |||||||||||  | |||||  ||||| ||||| ||||||| |||||||    
T  31030396 accacgggtggtggcttaacccgtttactattttgggcataggctaagtgtttctt 31030341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 17116522 - 17116404
Alignment:
Q  92 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 191  Q
    |||||||||| |||| || || ||||| |||||||||||||| || || |||| |||||||||| |||| | || |||||||||||||| |||||||       
T  17116522 caaagattgctcggtaatacaagtggttgataagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggt 17116423  T
Q  192 tggtggcttagtctgttta 210  Q
    |||||||||||||||||||    
T  17116422 tggtggcttagtctgttta 17116404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 38153904 - 38154001
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 208  Q
    ||||||||||||| ||||||||| || ||||||| ||||||||||  ||| |||  | |||||||||| || || |||   |||||||||||||||||    
T  38153904 caggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtctgtt 38154001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 87 - 303
Target Start/End: Original strand, 32160044 - 32160259
Alignment:
Q  87 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 186  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |    
T  32160044 aatgtcaaagattgctcggttatccaggtgatcgataagattaagtcgcttgcttttacgtggttgaggacgaagtttatttctctttccttcaattacc 32160143  T
Q  187 atcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatattgt 286  Q
    ||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||    
T  32160144 attggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctg-tttttgtttatgatctcttaggtaacttttgtatatattgt 32160242  T
Q  287 tcttgactctgatgtcc 303  Q
    |||||||||||||||||    
T  32160243 tcttgactctgatgtcc 32160259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 82 - 248
Target Start/End: Original strand, 15259370 - 15259536
Alignment:
Q  82 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 181  Q
    |||||||||||||| | ||  ||||||  ||||||||||| |||||||| |||||||||||||||||||||||| |||||| | ||||||||||| ||||    
T  15259370 tatttaatgtcaaataatgttcggttaatcaggtggtcgacaagattaaatcgcttgcttttacgtggttgaaggcgaagtatatttctcttcccctcaa 15259469  T
Q  182 ttatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 248  Q
    ||| |||  ||||| |||||||| ||||| |||  | ||||| ||||||||||||||||||||||||    
T  15259470 ttaccatgggtggtagcttagtccgtttaccatactgggcataggctaagagtttcttttctgtttt 15259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 26260768 - 26260869
Alignment:
Q  129 aagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggct 228  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||  |||| ||| || ||||||||||    
T  26260768 aagtctcttgcttttacgtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttgggcattggct 26260867  T
Q  229 aa 230  Q
    ||    
T  26260868 aa 26260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 27568382 - 27568486
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    |||||||| || | ||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||| |||  |||||||||||||||||||     
T  27568382 caggtggtagaaacgattaagtctcttgcttttacgtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagtctgtttg 27568481  T
Q  211 tcatt 215  Q
    |||||    
T  27568482 tcatt 27568486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 27363855 - 27363725
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||    ||||||| || ||||||| |||  || ||||||||||| |||||    
T  27363855 caggtggtcgataagattaagtcgcttgccttttcgtggttgaaggcgaagtactcttctctttccctcaattaccatgggttgtggcttagtccgttta 27363756  T
Q  211 tcattttaggcattggctaagagtttctttt 241  Q
     |||||| ||||| |||||||  ||||||||    
T  27363755 ccattttgggcataggctaaggttttctttt 27363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 44675097 - 44675206
Alignment:
Q  114 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 213  Q
    ||||| |||||||||||| | ||||| || | |||||||||| |||| |||| ||| ||||||||||||||||||   ||||||||||||| ||||||||    
T  44675097 gtggttgataagattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatca 44675196  T
Q  214 ttttaggcat 223  Q
    | || |||||    
T  44675197 tgttgggcat 44675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 1951953 - 1951913
Alignment:
Q  263 ttaggcaacttttgtatatattgttcttgactctgatgtcc 303  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1951953 ttaggcaacttttgtatatattgttcttgactctgatgtcc 1951913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 38133163 - 38133069
Alignment:
Q  87 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 181  Q
    |||| ||||| |||| ||||||| |||||| | ||||| ||||||||  |||||| ||||||||||||| |||  ||||||| ||||||||||||    
T  38133163 aatgacaaagtttgctcggttattcaggtgatagataacattaagtcttttgcttatacgtggttgaaggcgagatttgtttttcttcccttcaa 38133069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 9484879 - 9484921
Alignment:
Q  146 gtggttgaagacgaagtttgtttctcttcccttcaattatcat 188  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcat 9484921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 12688172 - 12688276
Alignment:
Q  106 ttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtct 205  Q
    |||| |||||||| ||||||||||||| |||  |||||| ||||||||||  |||||||    |||||||||| || ||||||   |||||||||||||     
T  12688172 ttatgcaggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtcc 12688271  T
Q  206 gttta 210  Q
    |||||    
T  12688272 gttta 12688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 25392413 - 25392345
Alignment:
Q  120 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 188  Q
    ||||||||||||||||| || | || |||||||||| ||||||||  || | |||||||||||||||||    
T  25392413 gataagattaagtcgctcgcatgtatgtggttgaaggcgaagttttcttattttcccttcaattatcat 25392345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 4889452 - 4889542
Alignment:
Q  114 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    ||||| ||||| |||||||||||||| || | |||||| ||| |||||||   |||||||||||| || ||||||  |||||| |||||||    
T  4889452 gtggttgataaaattaagtcgcttgcattcatgtggttcaaggcgaagttcccttctcttccctttaactatcatgggtggtgacttagtc 4889542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 27264588 - 27264662
Alignment:
Q  124 agattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggc 198  Q
    |||||||||||||||| ||| ||||||||||| ||||||    |||||||||| ||||||| |||  ||||||||    
T  27264588 agattaagtcgcttgccttttcgtggttgaaggcgaagtactcttctcttcccctcaattaccatgggtggtggc 27264662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 6723811 - 6723718
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    ||||||||||| ||||||||||| ||  |||||| ||||||||||  |||||||  | ||| ||| ||||||| ||||   |||||||||||||    
T  6723811 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtc 6723718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 10686285 - 10686232
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagttt 164  Q
    |||||||| |||||||||||||| ||| | ||| ||||||||||| ||||||||    
T  10686285 caggtggtggataagattaagtcccttacatttgcgtggttgaaggcgaagttt 10686232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 48973644 - 48973749
Alignment:
Q  105 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    ||||| |||||||| || || ||||||| | |  |||| | |||||| |||  |||||||||  |||||||||| |||||||||  ||||||||||||||    
T  48973644 gttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtc 48973743  T
Q  205 tgttta 210  Q
     |||||    
T  48973744 cgttta 48973749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 36098660 - 36098596
Alignment:
Q  171 cttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtt 235  Q
    ||||||||||||||||||   ||||||||||||| ||| | ||| || ||||| |||||||||||    
T  36098660 cttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagtt 36098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 84 - 303
Target Start/End: Complemental strand, 32196944 - 32196725
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||||||  |||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||||    
T  32196944 tttaatgtcaaagattgttcggttatccaggtggtcgaccagattaagtcgcttacttttacatggttgaagacgaagtttagttctcttcccttcaatt 32196845  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 283  Q
    | |||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  32196844 aacatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 32196745  T
Q  284 tgttcttgactctgatgtcc 303  Q
    ||||||||||||||||||||    
T  32196744 tgttcttgactctgatgtcc 32196725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 7824264 - 7824105
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||| ||| ||||||  ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  7824264 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaagattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 7824165  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttct 243  Q
    | |||  |||||||||||| | ||| | |||||| ||||| ||||||| |||||||||||    
T  7824164 accatgggtggtggcttagcccgttcaccattttgggcataggctaagtgtttcttttct 7824105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 11324442 - 11324564
Alignment:
Q  87 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 186  Q
    |||| ||||| |||| ||||| | ||| |||| || |||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  11324442 aatgacaaagtttgctcggttcttcagatggtagacaagattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatc 11324541  T
Q  187 atcagtggtggcttagtctgttt 209  Q
    ||  |||||||||||||| ||||    
T  11324542 atgggtggtggcttagtccgttt 11324564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 17292896 - 17292763
Alignment:
Q  81 gtatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 180  Q
    |||||||||| |||||| ||  || |||| |||||||||  |||||||||||| || || || | |||||||||  | || |||| ||||||||||||||    
T  17292896 gtatttaatggcaaagaatgatcgattatgcaggtggtcattaagattaagtctctagcattcatgtggttgaacgccaaatttgcttctcttcccttca 17292797  T
Q  181 attatcatcagtggtggcttagtctgtttatcat 214  Q
    ||||||||   || |||||||||| |||||||||    
T  17292796 attatcatggttgatggcttagtccgtttatcat 17292763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 18673363 - 18673482
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    |||||||| ||||| |||||||| ||| |||||| ||||||||||  ||| | |||   ||||||| |||||||||||   ||||||||||| | |||||    
T  18673363 caggtggtggataaaattaagtctcttacttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgttta 18673462  T
Q  211 tcattttaggcattggctaa 230  Q
      ||||||||||||||||||    
T  18673463 ctattttaggcattggctaa 18673482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 9200996 - 9200938
Alignment:
Q  126 attaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatta 184  Q
    ||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||    
T  9200996 attaagtcgcttgcttttacgtggtagaaggcgaagtatatttctcttcccctcaatta 9200938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 5667465 - 5667346
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||||||| |||| |  ||||| ||||||||||||||   |||||| |||||| |||||    
T  5667465 caggtggtcgataggattaagttactgactttcaaatggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgttta 5667366  T
Q  211 tcattttaggcattggctaa 230  Q
      ||||||||||| ||||||    
T  5667365 ctattttaggcataggctaa 5667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 34714895 - 34715013
Alignment:
Q  92 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 191  Q
    |||||| ||| |||| || || ||||| |||||||||||||| ||  |||||| |||||||||  | || |||  |||||||||| ||||||| |||       
T  34714895 caaagaatgctcggtaatacacgtggttgataagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggt 34714994  T
Q  192 tggtggcttagtctgttta 210  Q
    |||||||||||||||||||    
T  34714995 tggtggcttagtctgttta 34715013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 2682761 - 2682854
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||||||  ||| |||  | || ||| |||||||| ||||   |||||||||||||    
T  2682761 caggttgtcgacaagattaagtcccttgcttttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtc 2682854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 7155422 - 7155495
Alignment:
Q  115 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 188  Q
    |||| |||||||||||||  ||| |||||||||||||||||   || |||  |||||| |||||||||||||||    
T  7155422 tggttgataagattaagtttcttacttttacgtggttgaaggaaaaattttcttctctacccttcaattatcat 7155495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 84 - 303
Target Start/End: Original strand, 4740971 - 4741187
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4740971 tttaatgtcaaagattgctcggttatctaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtatatttctcttcccttcaatt 4741070  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatata 282  Q
    | |||  ||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    ||| || ||| |||||||| |||||||||    
T  4741071 accatgggtgatggcttagtccgtttaccattttaggcataggctaagagtttcttttctgtttttt----atgctctgttcaggcaactattgtatata 4741166  T
Q  283 ttgttcttgactctgatgtcc 303  Q
    |||||||||||||||||||||    
T  4741167 ttgttcttgactctgatgtcc 4741187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 14788867 - 14788964
Alignment:
Q  112 aggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 209  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  14788867 aggtggtagataagattaagtcccttgcttttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagtcagttt 14788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 13043321 - 13043485
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13043321 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13043420  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 248  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| ||||    
T  13043421 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctatttt 13043485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 13051398 - 13051562
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13051398 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13051497  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 248  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| ||||    
T  13051498 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctatttt 13051562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 20017522 - 20017410
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    |||||||| || ||||||||||| ||||||| |||||||||||||| ||| |||||||| |||||||| || || |||   ||||||||| ||| ||| |    
T  20017522 caggtggtagaaaagattaagtctcttgcttatacgtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctttgtccgttca 20017423  T
Q  211 tcattttaggcat 223  Q
     |||||| |||||    
T  20017422 ccattttgggcat 20017410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 47160990 - 47161106
Alignment:
Q  114 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 213  Q
    ||||| |||| |||||||| | |  |||||| ||||||||||  |||||||  ||||||||| |||||||| |||   ||||||||||| | ||||||      
T  47160990 gtggtggataggattaagttgttaacttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttagaccgtttattg 47161089  T
Q  214 ttttaggcattggctaa 230  Q
    |||||||||||||||||    
T  47161090 ttttaggcattggctaa 47161106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 6894192 - 6894304
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||| ||| |||| |  ||||||||||||||||||||   |||||| |||||| |||||    
T  6894192 caggtggtcgataggattaagttactgactttcaaatggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgttta 6894291  T
Q  211 tcattttaggcat 223  Q
      |||||||||||    
T  6894292 ctattttaggcat 6894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 25845647 - 25845740
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    |||||||| ||||| |||||||||||  |||| | |||||||||| ||||||||  |||||| ||||| || || |||   |||||||||||||    
T  25845647 caggtggttgataaaattaagtcgctctctttcatgtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtc 25845740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 33388634 - 33388601
Alignment:
Q  150 ttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||||| |||||||||||||||||    
T  33388634 ttgaagacgaagtttgcttctcttcccttcaatt 33388601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 6925997 - 6926049
Alignment:
Q  158 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||| |||||    
T  6925997 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttta 6926049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 146 - 303
Target Start/End: Original strand, 16610602 - 16610759
Alignment:
Q  146 gtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  16610602 gtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaatagtttcttttctgt 16610701  T
Q  246 tttttgtttatgatcagttaggcaacttttgtatatattgttcttgactctgatgtcc 303  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16610702 tttttgtttatgatctgttaggcaacttttgtatatattgttcttgactctgatgtcc 16610759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 84 - 303
Target Start/End: Complemental strand, 31706552 - 31706337
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| | ||||||||||| ||||||    
T  31706552 tttaatgtcaaagattgtttggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaatt 31706453  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatata 282  Q
    | |||  |||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||     |||||| |  ||| |||||||| ||||| |||    
T  31706452 accatgggtggtggcttagtccgtttaccatattgggcataggctaagagtttcttttctgtt-----tttatgctttgttcaggcaactattgtaaata 31706358  T
Q  283 ttgttcttgactctgatgtcc 303  Q
    |||||||||||||||||||||    
T  31706357 ttgttcttgactctgatgtcc 31706337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 29651894 - 29651767
Alignment:
Q  116 ggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcatt 215  Q
    |||||| |||||||||| |||||||||| ||||||||||  ||||||   ||||||||| | |||||||||||  |||||||||||||| ||||| |||     
T  29651894 ggtcgacaagattaagttgcttgctttttcgtggttgaatgcgaagtacttttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatg 29651795  T
Q  216 ttaggcattggctaagagtttcttttct 243  Q
    || ||||| |||||||  ||||||||||    
T  29651794 ttgggcataggctaaggttttcttttct 29651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 704642 - 704490
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    ||||| || ||||||||  ||||||| | |||| | |||||||||||||  ||| ||||| | ||||||||| | ||||||| || |||||| |||||||    
T  704642 tttaacgttaaagattgttcggttattcgggtgatagataagattaagtttcttacttttgcttggttgaaggcaaagtttgcttttcttccattcaatt 704543  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 236  Q
    |||||  |||||| ||||||| ||||| |||  | |||||||||||| |||||    
T  704542 atcatgggtggtgacttagtccgtttaccatactgggcattggctaaaagttt 704490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 30722638 - 30722538
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||| ||| ||||||  |||||||| || || |||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  30722638 tttaatgtcaaagaatgctcggttaatcaggtggtagacaatattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 30722539  T
Q  184 a 184  Q
    |    
T  30722538 a 30722538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 27482798 - 27482646
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||  ||||| ||| |||| || |||||||| |||||||||||||| || || |||  ||||||||||  ||| |  ||| | |||||||||||||    
T  27482798 tttaatgataaagaatgctcggtaattcaggtggttgataagattaagtccctcgccttttggtggttgaaggtgaaatacgttacacttcccttcaatt 27482699  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 236  Q
    |||||   ||||||||||||| ||| | ||| || ||||| ||||||||||||    
T  27482698 atcatggctggtggcttagtccgttcaccatgttgggcataggctaagagttt 27482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 29994645 - 29994735
Alignment:
Q  139 cttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggcta 229  Q
    |||||| ||||||||||  |||||||  || |||||||||||||||||||   |||||||||| || |||||   ||||||||||||||||    
T  29994645 cttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttactgttttaggcattggcta 29994735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 22922550 - 22922506
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaag 155  Q
    |||||||| || ||||||||||| |||||||||||||||||||||    
T  22922550 caggtggtagagaagattaagtctcttgcttttacgtggttgaag 22922506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 18967864 - 18967970
Alignment:
Q  123 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggca 222  Q
    ||||||||||| ||| |||||| |||||||||| |||| |||| ||||||||| || ||| |||||   || ||||||||||  ||||| ||  | ||||    
T  18967864 aagattaagtcactttcttttatgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccatttattatgctgggca 18967963  T
Q  223 ttggcta 229  Q
    |||||||    
T  18967964 ttggcta 18967970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 22924208 - 22924159
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaa 160  Q
    |||||||| || ||||||||||| |||| |||||||||||||||| ||||    
T  22924208 caggtggtagagaagattaagtctcttggttttacgtggttgaaggcgaa 22924159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 19315103 - 19314979
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    |||||||| |||||||||||||| ||  | |||| |||||||||| |||| |||| ||   ||||||  |||||||||   ||||||||||| | |||||    
T  19315103 caggtggttgataagattaagtcactcacatttatgtggttgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgttta 19315004  T
Q  211 tcattttaggcattggctaagagtt 235  Q
     |||  ||||||| |||||| ||||    
T  19315003 ccatgctaggcataggctaatagtt 19314979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 21041995 - 21042047
Alignment:
Q  158 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||| |||||    
T  21041995 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttta 21042047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 22923181 - 22923149
Alignment:
Q  123 aagattaagtcgcttgcttttacgtggttgaag 155  Q
    ||||||||||| |||||||||||||||||||||    
T  22923181 aagattaagtctcttgcttttacgtggttgaag 22923149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 150 - 303
Target Start/End: Original strand, 8090506 - 8090659
Alignment:
Q  150 ttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttt 249  Q
    ||||||||| ||||| |||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  8090506 ttgaagacggagtttatttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgttttt 8090605  T
Q  250 tgtttatgatcagttaggcaacttttgtatatattgttcttgactctgatgtcc 303  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  8090606 tgtttatgatctgttaggcaacttttgtatatattgttcttaactctgatgtcc 8090659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 248
Target Start/End: Complemental strand, 40638930 - 40638766
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    |||||||||||||| ||| | ||||  ||||||||||| |||||||| |||||| | ||||||||||||| |  ||||| || |||||||||||||||||    
T  40638930 tttaatgtcaaagagtgctcagttaatcaggtggtcgacaagattaaatcgcttacctttacgtggttgatgttgaagtatgcttctcttcccttcaatt 40638831  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 248  Q
    | |||  |||||||||||||| |||||  ||||| | ||| |||||| |||||||||| ||||||    
T  40638830 accatgggtggtggcttagtccgtttacgattttggacataggctaaaagtttcttttatgtttt 40638766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 31640241 - 31640356
Alignment:
Q  114 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 213  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||   ||||||||||||| |||||  |    
T  31640241 gtggtagataagattaagtcacttgcttttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtttacaa 31640340  T
Q  214 ttttaggcattggcta 229  Q
    || ||||||| |||||    
T  31640341 ttataggcataggcta 31640356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 20948080 - 20948244
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    ||||||| |||||| ||| |||||   ||||||||| | ||||||||||||||||| ||| ||||||||||| |||||| |  |||||||| | ||||||    
T  20948080 tttaatgccaaagactgctcggtttctcaggtggtcaacaagattaagtcgcttgccttttcgtggttgaaggcgaagtattcttctcttcgcctcaatt 20948179  T
Q  184 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 248  Q
    | |||  |||||||||||||| ||||| ||| || ||  | |||||||  |||||||||| ||||    
T  20948180 accatgggtggtggcttagtccgtttaccatgttgggtgtaggctaaggttttcttttctttttt 20948244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 27708286 - 27708189
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 208  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||| |||| |||| | ||||||||||||||  ||||   |||||||||| ||||||    
T  27708286 caggtggttgataagattaagtcgctcgcttttacgtggttaaaggcgaaatttgctactcttcccttcaatcttcatggttggtggcttaatctgtt 27708189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 44736075 - 44735977
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 209  Q
    ||||||||||| ||||||||||| ||  |||||| |||||||||| ||||||||  | ||||||||||||||| ||||   | ||||||||||||||||    
T  44736075 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtctgttt 44735977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 27009200 - 27009296
Alignment:
Q  114 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    ||||| |||||||||||||| || ||||||| ||| |||||| |||| |||  |||||||||||||||||| |||   ||||||||||||| |||||    
T  27009200 gtggttgataagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgttta 27009296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43451291 - 43451330
Alignment:
Q  1 caagtgcgtaccacacgcttccactaattcaaatgcacac 40  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  43451291 caagtgcgcaccacacgcttccactaattcaaatgcacac 43451330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 9420795 - 9420722
Alignment:
Q  168 tctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctttt 241  Q
    ||||||||| |||||||||||  |||||||||||| | |||||  ||||||||||| |||||||  ||||||||    
T  9420795 tctcttcccctcaattatcatgggtggtggcttagcccgtttactattttaggcataggctaaggttttctttt 9420722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 45131220 - 45131107
Alignment:
Q  117 gtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattt 216  Q
    ||||| ||||||| |||||   |||| | ||||||||||  ||| | || ||||||||||||||||||||||  ||||||||||||||  |||| |||      
T  45131220 gtcgacaagattatgtcgcaaactttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgc 45131121  T
Q  217 taggcattggctaa 230  Q
    | ||||||||||||    
T  45131120 tgggcattggctaa 45131107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 9840768 - 9840855
Alignment:
Q  114 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 201  Q
    ||||| ||||||||||| ||||| ||||||| ||| |||||| | || |||| | ||||||| ||||||||||||   ||||||||||    
T  9840768 gtggttgataagattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggctta 9840855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 33645932 - 33645830
Alignment:
Q  115 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcat 214  Q
    |||| ||||||||||||||||| || |||| ||||||||||   || |||| | ||||||| |||||||| |||   |||||| |||||||||| | |||    
T  33645932 tggttgataagattaagtcgctcgcatttaggtggttgaaggaaaaatttgctactcttcctttcaattaccatggttggtgggttagtctgttcaccat 33645833  T
Q  215 ttt 217  Q
    |||    
T  33645832 ttt 33645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 21563423 - 21563488
Alignment:
Q  123 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 188  Q
    ||||||||||| ||| ||||||||||||||| | | || |||||||||||| | || |||||||||    
T  21563423 aagattaagtcactttcttttacgtggttgagggcaaaatttgtttctctttcattaaattatcat 21563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 30505717 - 30505838
Alignment:
Q  114 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 213  Q
    ||||| |||||||||||||  || || ||||  | |||||||  ||| |||  ||| ||||||||||||||||||   |||||| |||||||||||| ||    
T  30505717 gtggttgataagattaagtttctcgcatttatctagttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttacca 30505816  T
Q  214 ttttaggcattggctaagagtt 235  Q
    | || ||||| |||||| ||||    
T  30505817 tgttgggcataggctaatagtt 30505838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 52577965 - 52578101
Alignment:
Q  93 aaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagt 192  Q
    |||| |||| ||||| | |||||| | |||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||||   |    
T  52577965 aaagtttgctcggttcttcaggtgatagataagattaagtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggtt 52578064  T
Q  193 ggtggcttagtctgtttatcattttaggcattggcta 229  Q
    |||||||||||  ||||  |||| ||||||| |||||    
T  52578065 ggtggcttagtgcgtttgccattctaggcataggcta 52578101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 9831377 - 9831476
Alignment:
Q  105 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    ||||| |||||||| |||||||| ||||| |||||||||| |||||||||| |||| || ||| | ||||||||||||||||||   |||||||||||||    
T  9831377 gttattcaggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtc 9831476  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 30972515 - 30972395
Alignment:
Q  84 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 183  Q
    ||||||| |||||| ||| |  |||| |||||||| ||||| |||||||||||  |||| | |||| ||||| |||| |||  ||||||||||||||| |    
T  30972515 tttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtcgctgactttcatgtggctgaaggcgaaatttccttctcttcccttcaact 30972416  T
Q  184 atcatcagtggtggcttagtc 204  Q
    |||||   |||||||||||||    
T  30972415 atcatggctggtggcttagtc 30972395  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 22653286 - 22653385
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    |||||||| ||||||||||| |||||  | |||| |||||||||| |||| |||| ||   || ||||||||||||||   |||||||||||||||||||    
T  22653286 caggtggttgataagattaaatcgctcacatttatgtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtctgttta 22653385  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 11131287 - 11131194
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    |||||||| |||| |||||||| |||  |||||  ||||||||||  |||||||||  |||||||||| |||||||||   |||||||||||||    
T  11131287 caggtggtagataggattaagttgctatcttttcagtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 11131194  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 19846574 - 19846646
Alignment:
Q  158 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaa 230  Q
    ||||| || ||||||||||||||||||||||  ||||||| |||||| ||||| ||| || ||||||| ||||    
T  19846574 gaagtatgcttctcttcccttcaattatcatgggtggtggattagtccgtttaccatgttgggcattgtctaa 19846646  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 43001717 - 43001801
Alignment:
Q  120 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    |||||||||||||| ||  | |||| |||||||||| ||||||||  | ||||||  ||||||||||||  ||||||||||||||    
T  43001717 gataagattaagtcactaacatttatgtggttgaaggcgaagtttactactcttcatttcaattatcatatgtggtggcttagtc 43001801  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 8831039 - 8830949
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 201  Q
    |||||||| || || |||||||||||  |||||| || |||||||  ||| ||| ||| ||||||||||||||| ||| | ||||||||||    
T  8831039 caggtggttgacaaaattaagtcgctcacttttatgtagttgaaggagaaatttctttatcttcccttcaattaccatgactggtggctta 8830949  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 25130538 - 25130441
Alignment:
Q  114 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttat 211  Q
    |||||||||||||| ||||| || ||||| | ||||||||||  ||| |||| | ||||| || |||| ||||||   ||||||||||||| ||||||    
T  25130538 gtggtcgataagatcaagtccctcgctttcatgtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgtttat 25130441  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 48336968 - 48337036
Alignment:
Q  120 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 188  Q
    ||||| |||||||||||  |||| | |||||||||| |||| |||  |||||||||||||||| |||||    
T  48336968 gataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcat 48337036  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 8462613 - 8462514
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    |||||||| |||||||||||||| ||  | || | |||||||||| |||| |||| ||||||||||||||||||||||   |||||||||||||||||||    
T  8462613 caggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgttta 8462514  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 5751992 - 5752057
Alignment:
Q  123 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 188  Q
    ||||||||||||||||  ||||||||||||||| |||||| |   ||||||||| |||||||||||    
T  5751992 aagattaagtcgcttgtctttacgtggttgaaggcgaagtattcctctcttcccctcaattatcat 5752057  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 33282823 - 33282913
Alignment:
Q  120 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 210  Q
    ||||| |||||||||||| |||||| ||||||||||   || |||| |||||| ||  |||||||||||   ||||||||||||| |||||    
T  33282823 gataaaattaagtcgcttacttttaggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtccgttta 33282913  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 39435582 - 39435484
Alignment:
Q  82 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 180  Q
    |||| |||| |||||| ||| ||||| | |||||||| |||||||||||||| || |  || | |||||||||| |||| |||| ||||||||| ||||    
T  39435582 tattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgagttcatgtggttgaaggcgaaatttgcttctcttcctttca 39435484  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 37929106 - 37929199
Alignment:
Q  111 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    ||||||||||||| ||||||||| || || |||| ||||||||||  ||| |||  | |||||||||| || ||||||   |||||||||||||    
T  37929106 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 37929199  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 33191270 - 33191210
Alignment:
Q  144 acgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 204  Q
    ||||||||||||  ||| |||| | ||||||||||||||||||||   |||||||||||||    
T  33191270 acgtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtc 33191210  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 38738483 - 38738543
Alignment:
Q  170 tcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaa 230  Q
    ||||||| |||||||||||   ||||||||||| | |||||  ||||||||||||||||||    
T  38738483 tcttcccctcaattatcatggttggtggcttagcccgtttactattttaggcattggctaa 38738543  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 20009 - 19937
Alignment:
Q  227 ctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatatattgttcttgactctgatgtcc 303  Q
    |||||||||||||||||||||||     ||| || ||| |||||||| ||||| ||||||||||||||||||||||||    
T  20009 ctaagagtttcttttctgttttt-----atgctctgttcaggcaactattgtaaatattgttcttgactctgatgtcc 19937  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 24490 - 24558
Alignment:
Q  120 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 188  Q
    ||||| |||||||||||  |||| | |||||||||| |||| |||  |||||||||||||||| |||||    
T  24490 gataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcat 24558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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