View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_42 (Length: 295)

Name: NF9369_low_42
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_42
NF9369_low_42
[»] chr3 (2 HSPs)
chr3 (159-272)||(14006606-14006719)
chr3 (17-106)||(14006464-14006553)
[»] chr1 (1 HSPs)
chr1 (161-204)||(40501532-40501575)
[»] chr2 (1 HSPs)
chr2 (171-204)||(8112584-8112617)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 14006606 - 14006719
Alignment:
Q  159 tccctaatcacatcaaaagtcatttagactgattccttctaaaaaattacacaacaaacaatacctgtcacttgaaatgatgatgagtgaggaccgaact 258  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  14006606 tccctaatcacctcaaaagtcatttagacggattccttctaaaaaattacacaacaaacaatacctgccacttgaaatgataatgagtgaggaccgaact 14006705  T
Q  259 gaagggatatggcc 272  Q
    ||||||||| ||||    
T  14006706 gaagggatacggcc 14006719  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 14006464 - 14006553
Alignment:
Q  17 aataacacctaaggttgcaaaatacatgtaggcagtaaagaaagaaaaatctcaaaacctctacctgctaaacatgatagaggcgagaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  14006464 aataacacctaaggttgcaaaatacatgtaggcagtaaagaaagaaaaatctcaaaacctctacctgctaaacatgacagaggcaagaag 14006553  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 40501532 - 40501575
Alignment:
Q  161 cctaatcacatcaaaagtcatttagactgattccttctaaaaaa 204  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  40501532 cctaatcacctcaaaagtcatttagattgattccttctaaaaaa 40501575  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 8112584 - 8112617
Alignment:
Q  171 tcaaaagtcatttagactgattccttctaaaaaa 204  Q
    |||||||||||||| |||||||||||||||||||    
T  8112584 tcaaaagtcatttaaactgattccttctaaaaaa 8112617  T

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