View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_43 (Length: 291)
Name: NF9369_low_43
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_43 |
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| [»] scaffold0174 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 48823970 - 48823685
Alignment:
| Q |
1 |
ctttcgttcgactcttattttaatttggctaacgtacacttgagtgtta--------tggaaaaaacataataatatgatttttaataacaaggcagtat |
92 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| || ||||||||||||||||||||||||||||| ||| |
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| T |
48823970 |
ctttcgttcgactcttattttaatttggctaacgtatacttgggtgttaattatatatggaaagaatataataatatgatttttaataacaaggcactat |
48823871 |
T |
|
| Q |
93 |
caattgatgaattagtggacaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatcattggtggcttaac |
192 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48823870 |
caattgatgaattagtggacaagagatgaagctactctctttttggtggctgaaggcgaaacatataatttttgtttttaattatcattggtggcttaac |
48823771 |
T |
|
| Q |
193 |
cccttggcttgtttgagtattgtcatgtaattttgcttttcagtatttatacattgtagatgaactctctaaactttgtttgctct |
278 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48823770 |
cccttgacttgtttgagtattgtcatgtaattttgcttttaagtacttatacattgtagatgaactctctaaactttgtttgctct |
48823685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 21548160 - 21547964
Alignment:
| Q |
8 |
tcgactcttattttaatttggctaacgtacacttgagtgttatggaaaaaacataataatatgatttttaataacaaggcagtatcaattgatgaattag |
107 |
Q |
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|||| ||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| | |||||||| |||||||| |||| |||||| |||||| |
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| T |
21548160 |
tcgattcttattttaatttggctaacgtgcacttgggtgttatggaaagaacgtaataacaaaatttttaacgacaaggcattatcgattgataaattag |
21548061 |
T |
|
| Q |
108 |
tggacaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatca---ttggtggcttaaccccttggcttg |
203 |
Q |
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| T |
21548060 |
tggata--aggtgaagctactttctttttggtggctgaaggcgaaacatgtaatttttgcttttcgctatcattgttggcggcttaatcccttggcttg |
21547964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 276
Target Start/End: Complemental strand, 24433987 - 24433831
Alignment:
| Q |
122 |
agctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatca---ttggtggcttaaccccttggcttgtttgagtattgtcat |
218 |
Q |
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||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||| |||| | |||||||||||| |||||| ||| |
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| T |
24433987 |
agctactttctttttg-tggctgaagacgaaacatataatttttgcttttagttatcattgttggtggtttaatacattggcttgtttgggtattgccat |
24433889 |
T |
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| Q |
219 |
gtaattttgcttttcagtatttatacattgtagatgaactctctaaactttgtttgct |
276 |
Q |
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| T |
24433888 |
gtaattttgctttttagcacttgtaacttgtaggtgaactttgtaaacattgtttgct |
24433831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 276
Target Start/End: Complemental strand, 6041492 - 6041315
Alignment:
| Q |
95 |
attgatgaattagtggacaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatcattggtggcttaaccc |
194 |
Q |
| |
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||||||||||||| |||||| || |||| ||| |||||||||||| |||||| ||||||| |||||||||| | ||||| |||||||||||| || |
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| T |
6041492 |
attgatgaattagcagacaag--gtaaagccactttctttttggtggttgaaggggaaacatgtaatttttgcgct--attattgttggtggcttaatcc |
6041397 |
T |
|
| Q |
195 |
cttggcttgtttgagtattgtcatgtaattttgcttttcagtatttatacattgtagatgaactctctaaactttgtttgct |
276 |
Q |
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|||||||| |||| |||||| ||||||||||||||||||| | || || |||| |||||||| ||||| ||||||||| |
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| T |
6041396 |
cttggcttatttgggtattgctatgtaattttgcttttcagcacttgtaacctgtatgtgaactctataaacattgtttgct |
6041315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 96 - 281
Target Start/End: Original strand, 39718194 - 39718380
Alignment:
| Q |
96 |
ttgatgaattagtggacaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatca---ttggtggcttaac |
192 |
Q |
| |
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|||||||||||||||||||| |||||| |||| | |||||||||||||||| |||||||| ||| ||||||||||| |||||| |||||||||||| |
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| T |
39718194 |
ttgatgaattagtggacaag--gtgaagttactttttttttggtggctgaagtcgaaacatgtaaattttgcttttagttatcactgttggtggcttaat |
39718291 |
T |
|
| Q |
193 |
cccttggcttgtttgagtattgtcatgtaattttgcttttcagtatttatacattgtagatgaactctctaaactttgtttgctctctg |
281 |
Q |
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| T |
39718292 |
cctttggcatgtttgggtatcaccgtgtaatttttcttttcagtacttgtacatagtagatgaactttgtaaactttgtttgttctctg |
39718380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 24869632 - 24869851
Alignment:
| Q |
11 |
actcttattttaatttggctaacgtacacttgagtgttatggaaaaaacataataatatgatttttaataacaaggcagtatcaattgatgaattagtgg |
110 |
Q |
| |
|
|||||| || |||| |||||||||| || ||| ||| |||||||| ||| ||||| |||||||||||||||||||| | || ||| |||||||||||| |
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| T |
24869632 |
actcttcttgtaatatggctaacgtgcatttgggtgatatggaaagaacgaaataacatgatttttaataacaaggccgcttcgatttatgaattagtgg |
24869731 |
T |
|
| Q |
111 |
acaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatca---ttggtggcttaaccccttggcttgtttg |
207 |
Q |
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||| | || ||||| || ||||||| ||||||||||| |||| || ||||||||||||||| |||||| |||||||||||| ||||||| ||||||| |
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| T |
24869732 |
aca--aagttaagctgctatcttttttgtggctgaaggagaaatatgtaatttttgcttttagttatcattgttggtggcttaatcccttggtttgtttg |
24869829 |
T |
|
| Q |
208 |
agtattgtcatgtaattttgct |
229 |
Q |
| |
|
|||| |||||||||||||| |
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| T |
24869830 |
gatattagcatgtaattttgct |
24869851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 21515808 - 21515736
Alignment:
| Q |
209 |
gtattgtcatgtaattttgcttttcagtatttatacattgtagatgaactctctaaactttgtttgctctctg |
281 |
Q |
| |
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|||||| |||||||||||| ||||||||| || |||||| | | |||||||| ||||||||||||| |||||| |
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| T |
21515808 |
gtattgccatgtaattttgtttttcagtacttgtacattattggtgaactctgtaaactttgtttgttctctg |
21515736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 23554 - 23653
Alignment:
| Q |
48 |
tatggaaaaaacataataatatgatttttaataacaaggcagtatcaattgatgaattagtggacaagaggtgaagctactctctttttggtggctgaag |
147 |
Q |
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| T |
23554 |
tatggaaaaaacgcaataacaagatttttaataacaaggtagtgtctatttctggactggtggacaac--gttaagctactctctttttggtggctgaag |
23651 |
T |
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