View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_45 (Length: 289)
Name: NF9369_low_45
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 7165738 - 7165985
Alignment:
| Q |
1 |
agcttttgtcaaaaaactataactaaaaattatttatggtcaaatgtgatcaataccatctcaatctcatttacgtagatatttaaaacttagatatctt |
100 |
Q |
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|||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7165738 |
agcttttgtcaaaaaactataactgaaaattat----ggtcagatgtgatcaataccatctcaatctcatttacgtagatatttaaaacttagatatcta |
7165833 |
T |
|
| Q |
101 |
tagcttgtcattaaccctttnnnnnnn-tagttgtgacatccatgtcatcaccatctttaccacctaggtacctattccctgtccttatcactagatgat |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
7165834 |
tagcttgtcattaaccctttaaaaaaaatagttgtgacatccatgtcatcaccatctttgccacctaggtacctattcactgtccttatcactagatgat |
7165933 |
T |
|
| Q |
200 |
gttgaacacaaatagaacaaagttggagtcacatattatgtcctctaaatta |
251 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7165934 |
gttgaacgcaaatagaacaaagttggagtcacatattatgtcctctaaatta |
7165985 |
T |
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