View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_46 (Length: 285)
Name: NF9369_low_46
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_46 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 40631433 - 40631699
Alignment:
| Q |
19 |
attggtgccatgagagctatggagatagcgaaggaccgaaattggagcaatttctagttagagacagattcaatgctagtggttttggcattcaaatcat |
118 |
Q |
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| T |
40631433 |
attggtgccatgagagctatggagatagcgaaggaccgaaattggagcaatttctagttagagacagattcaatgctagtggttttggcattcaaatcat |
40631532 |
T |
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| Q |
119 |
cctagggggtgccttggaaattaaggaatagatggtacaattggttagattttatttcttctattaattttttgatttctcatgtatttagagaagggaa |
218 |
Q |
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| T |
40631533 |
cctagggggtgccttggaaattaatgaatagatggtacaattggttagatttgatttcttctattaattttttgatttctcatgtatttagagaagggaa |
40631632 |
T |
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| Q |
219 |
tacatgtactgataagttagctaatattggtttaacttttaactgaagaggtcttggtggtatccct |
285 |
Q |
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| T |
40631633 |
tacatgtactgataagttagctaatattggtttaacttttaactgaagaggtcttggtggtatccct |
40631699 |
T |
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