View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_47 (Length: 281)
Name: NF9369_low_47
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 10097356 - 10097616
Alignment:
| Q |
18 |
acataaacttttattattttcttagtcatatataataattcacataacattagataatttactttagtaattatcttttttggttataatatggttcaaa |
117 |
Q |
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| T |
10097356 |
acataaacttttattattttcttagtcatatataataattcacataacattagataatttactttagtaattatcttttttggttataatatggttcaaa |
10097455 |
T |
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| Q |
118 |
atgtatttcctatatctacaggtaccatagcacaattatttggagctggtgaaagtgaatgttctgtaatgatgctatggacctatgcactggcgtcaat |
217 |
Q |
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| T |
10097456 |
gtgtatttcctatgtctacaggtaccatagcacaattatttggagctggtgaaagtgaatgttctgtaatgatgctatggacctatgcattggcgtcaat |
10097555 |
T |
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| Q |
218 |
tgcagtgactctttggtcaacctacttcatgtggcttgtctcttgattattatttttcatt |
278 |
Q |
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| T |
10097556 |
tgcagtgactctttggtcaacctacttcatgtggcttgtctcttgattattatttttcatt |
10097616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 10092054 - 10092250
Alignment:
| Q |
71 |
ataatttactttagtaattatcttttttggttataatatggttcaaaatgtatttcctatatctacaggtaccatagcacaattatttggagctggtgaa |
170 |
Q |
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| T |
10092054 |
ataatttacctaagtaattagatttgttggttgtaatatttttcaaactttatttcctatgtctacaggtaccatagcacaattatttggagctggtgaa |
10092153 |
T |
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| Q |
171 |
agtgaatgttctgtaatgatgctatggacctatgcactggcgtcaattgcagtgactctttggtcaacctacttcatgtggcttgtctcttgattat |
267 |
Q |
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| T |
10092154 |
agtgaatgttcagttatgatgctatggacctatgcattggcgtcaattgcagtgactctttggtcaacttacttcatgtggcttgtctcttgattat |
10092250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 30669851 - 30669762
Alignment:
| Q |
164 |
tggtgaaagtgaatgttctgtaatgatgctatggacctatgcactggcgtcaattgcagtgactctttggtcaacctacttcatgtggct |
253 |
Q |
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| T |
30669851 |
tggtgaaagtgaatgctcagttatcatgctatggtcatatgctttggcgtcaattgcggttaccctttggtcaacctttttcatgtggct |
30669762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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