View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_48 (Length: 281)
Name: NF9369_low_48
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_48 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7979077 - 7979351
Alignment:
| Q |
1 |
tcccaatcaaaa-tatttaataacttgagaattatcattgattgaaagtattttgaaaaatataaatgttttatacctgaaggacatgactgctgctgcc |
99 |
Q |
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| T |
7979077 |
tcccaatcaaaaatatttaataacttgagaattatcattgattgaaaatattttgaaaaatataaaagttttatacctgaaggacatgactgctgctgcc |
7979176 |
T |
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| Q |
100 |
aaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatgatgaaataggtcaactttatctttttgc |
199 |
Q |
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| T |
7979177 |
aaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatgatgaaataggtcaactttatctttttgc |
7979276 |
T |
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| Q |
200 |
agcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgttaacaccaa |
274 |
Q |
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| T |
7979277 |
agcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgttaacaccaa |
7979351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 265
Target Start/End: Complemental strand, 8032219 - 8032035
Alignment:
| Q |
81 |
ggacatgactgctgctgccaaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatgatgaaatag |
180 |
Q |
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| T |
8032219 |
ggacatgactgctgcaaccaaggatacaccggaaatggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaatag |
8032120 |
T |
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| Q |
181 |
gtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgt |
265 |
Q |
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| T |
8032119 |
gtcaatttgatatttttgcaacttgaacacactgtattgtggaacttccgcaatgatgcacctccggtgaccatgtagacaatgt |
8032035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 3113 - 3298
Alignment:
| Q |
81 |
ggacatgactgctgctgccaaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatgatgaaatag |
180 |
Q |
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| T |
3113 |
ggacatgactgctgccaccaaagatacaccagaaatggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaatat |
3212 |
T |
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| Q |
181 |
gtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgtt |
266 |
Q |
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| T |
3213 |
gtcaatttgatatttttgcaacttggacacactgtattgtggaactttcgcagtgatgcacctccggtgaccatgtaaacaatgtt |
3298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 269
Target Start/End: Original strand, 14198547 - 14198743
Alignment:
| Q |
73 |
tacctgaaggacatgactgctgctgccaaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatga |
172 |
Q |
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||||| || |||||||| || || || || || ||||||||||| ||||| || | |||||| ||||| || ||||||||||| || ||||| ||||| | |
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| T |
14198547 |
taccttaacgacatgacagcggcggctaaagagacaccagaaatagagttcaagttagggaggtgagacaagacaaagtgaacagaggcaaaaatcatta |
14198646 |
T |
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| Q |
173 |
tgaaataggtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgttaac |
269 |
Q |
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| T |
14198647 |
taaaataagtcaatttgatttttttgcaatcggaacacacggtatcatgaaacttctgcaaagattttcctccggttaccatgtagacaatgttaac |
14198743 |
T |
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