View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_52 (Length: 264)

Name: NF9369_low_52
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_52
NF9369_low_52
[»] chr4 (11 HSPs)
chr4 (17-261)||(33759401-33759645)
chr4 (192-233)||(30848643-30848684)
chr4 (192-230)||(18508871-18508909)
chr4 (164-220)||(2734168-2734225)
chr4 (175-232)||(12276820-12276878)
chr4 (175-224)||(23151590-23151640)
chr4 (192-233)||(24980676-24980717)
chr4 (176-220)||(40391257-40391302)
chr4 (192-233)||(54235273-54235314)
chr4 (173-233)||(55827292-55827353)
chr4 (192-232)||(3249703-3249743)
[»] chr5 (11 HSPs)
chr5 (29-138)||(11598046-11598155)
chr5 (180-233)||(968333-968387)
chr5 (175-232)||(34252717-34252775)
chr5 (181-232)||(19644450-19644502)
chr5 (200-232)||(23344907-23344939)
chr5 (173-232)||(20219495-20219554)
chr5 (175-232)||(9956550-9956608)
chr5 (192-233)||(39030581-39030622)
chr5 (180-220)||(42324944-42324985)
chr5 (193-229)||(14611071-14611107)
chr5 (192-232)||(16500575-16500615)
[»] chr2 (11 HSPs)
chr2 (165-232)||(44726834-44726902)
chr2 (177-232)||(16180487-16180543)
chr2 (175-233)||(17437177-17437236)
chr2 (175-232)||(2884256-2884314)
chr2 (177-233)||(10459268-10459325)
chr2 (175-233)||(31469071-31469130)
chr2 (175-233)||(33829389-33829448)
chr2 (181-233)||(5713276-5713329)
chr2 (192-233)||(11386327-11386368)
chr2 (180-220)||(30517918-30517959)
chr2 (192-233)||(41912128-41912169)
[»] chr7 (8 HSPs)
chr7 (181-233)||(23971236-23971288)
chr7 (176-233)||(6803308-6803366)
chr7 (175-233)||(47967913-47967972)
chr7 (175-232)||(18732042-18732099)
chr7 (176-233)||(5026141-5026199)
chr7 (192-233)||(16866452-16866493)
chr7 (181-233)||(30794447-30794500)
chr7 (192-233)||(44816485-44816526)
[»] chr1 (7 HSPs)
chr1 (179-233)||(3694038-3694093)
chr1 (178-220)||(35310316-35310359)
chr1 (181-233)||(19758322-19758375)
chr1 (192-233)||(47543617-47543658)
chr1 (175-233)||(3739865-3739924)
chr1 (175-233)||(30693335-30693394)
chr1 (197-233)||(10498377-10498413)
[»] scaffold2113 (1 HSPs)
scaffold2113 (177-233)||(627-684)
[»] chr6 (12 HSPs)
chr6 (173-233)||(31522659-31522719)
chr6 (175-233)||(8437825-8437884)
chr6 (175-233)||(9829891-9829950)
chr6 (175-232)||(1986204-1986262)
chr6 (192-229)||(2282416-2282453)
chr6 (192-233)||(31323832-31323873)
chr6 (180-230)||(28596080-28596131)
chr6 (175-233)||(35003759-35003818)
chr6 (175-231)||(7343294-7343351)
chr6 (176-232)||(14446697-14446754)
chr6 (180-232)||(24640142-24640195)
chr6 (177-233)||(28004674-28004731)
[»] chr8 (5 HSPs)
chr8 (192-233)||(15114635-15114676)
chr8 (185-233)||(11196268-11196316)
chr8 (181-232)||(44080727-44080779)
chr8 (176-233)||(33557826-33557884)
chr8 (192-233)||(13209982-13210023)
[»] chr3 (9 HSPs)
chr3 (192-233)||(3956176-3956217)
chr3 (192-233)||(26104236-26104277)
chr3 (181-233)||(31280161-31280214)
chr3 (162-233)||(47783065-47783137)
chr3 (192-233)||(32221521-32221562)
chr3 (192-233)||(40955796-40955837)
chr3 (192-232)||(26914501-26914541)
chr3 (192-232)||(40905820-40905860)
chr3 (173-220)||(46829106-46829154)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 33759645 - 33759401
Alignment:
Q  17 acattgcagccactgagcatgaaccggaatctcagtggtaatatcatggtgagtaattgggaaaaacggagcctaatgcttatcatcaacgggcacacca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759645 acattgcagccactgagcatgaaccggaatctcagtggtaatatcatggtgagtaattgggaaaaacggagcctaatgcttatcatcaacgggcacacca 33759546  T
Q  117 gctggtaaccatattttgaaaagattnnnnnnnttagtttgcttgagtgtactcatttcgtcccaaaatataagtaaaattggtcaacaaaaattaatgt 216  Q
    |||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759545 gctggtaaccatattttgaaaacattaaaaaaattagtttgcttgagtgtactcatttcgtcccaaaatataagtaaaattggtcaacaaaaattaatgt 33759446  T
Q  217 atttagttcaaaatttgacttatggtttgttacaactcgaaagtc 261  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  33759445 atttagttcaaaatttgacttatggtttgttacaactagaaagtc 33759401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 30848684 - 30848643
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  30848684 aaaattggtcaacaaaaattaatgtattttgttcaaaatttg 30848643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 18508909 - 18508871
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaat 230  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  18508909 aaaattggtcaacaaaagttaatgtatttagttcaaaat 18508871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 2734168 - 2734225
Alignment:
Q  164 tgtactcatttcgtcccaaaatataagt-aaaattggtcaacaaaaattaatgtattt 220  Q
    ||||||| || ||||||||||||||||| |||||| |||||||||| |||||||||||    
T  2734168 tgtactccttccgtcccaaaatataagtaaaaattagtcaacaaaagttaatgtattt 2734225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 12276820 - 12276878
Alignment:
Q  175 cgtcccaaaatataagtaaa-attggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||| |||||||||||||| |||||||| ||||| |||||||||||  ||||||||||    
T  12276820 cgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaattt 12276878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 23151640 - 23151590
Alignment:
Q  175 cgtcccaaaatataa-gtaaaattggtcaacaaaaattaatgtatttagtt 224  Q
    |||| |||||||||| | ||||||| |||||||||||||||||||||||||    
T  23151640 cgtctcaaaatataaagaaaaattgatcaacaaaaattaatgtatttagtt 23151590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 24980717 - 24980676
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||| |||||||||||||||||||||| || |||||||||    
T  24980717 aaaatttgtcaacaaaaattaatgtattttgtacaaaatttg 24980676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 40391257 - 40391302
Alignment:
Q  176 gtcccaaaatataagtaaaattgg-tcaacaaaaattaatgtattt 220  Q
    |||||||||||||||||||| | | |||||||||||||||||||||    
T  40391257 gtcccaaaatataagtaaaaatcgatcaacaaaaattaatgtattt 40391302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 54235314 - 54235273
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||    
T  54235314 aaaattgctcaacaaaagttaatgtatttggttcaaaatttg 54235273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 55827353 - 55827292
Alignment:
Q  173 ttcgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||||| |||| ||||||||||||| ||||| ||||| ||| ||| ||||    
T  55827353 ttcgtcccaaaatataagcaaaaattggtcaacaaaagttaatatatttggttaaaattttg 55827292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 3249703 - 3249743
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    |||||||||| |||||| ||||||||||| |||||||||||    
T  3249703 aaaattggtcgacaaaagttaatgtatttggttcaaaattt 3249743  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 11598046 - 11598155
Alignment:
Q  29 ctgagcatgaaccggaatctcagtggtaatatcatggtgagtaattgggaaaaacggagcctaatgcttatcatcaacgggcacaccagctggtaaccat 128  Q
    |||||||||||| ||||||||| ||| ||||||||||||| | ||||||||||| |||| | ||| |||||||||||| ||||||||||||||||| |||    
T  11598046 ctgagcatgaactggaatctcattggcaatatcatggtgaatgattgggaaaaatggaggccaattcttatcatcaacaggcacaccagctggtaagcat 11598145  T
Q  129 attttgaaaa 138  Q
    ||||||||||    
T  11598146 attttgaaaa 11598155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 968387 - 968333
Alignment:
Q  180 caaaatataagtaaaattg-gtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||| || |||||||||||||||| ||||||||||||||||||    
T  968387 caaaatataagtaaaaatgagtcaacaaaaattaatatatttagttcaaaatttg 968333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 34252717 - 34252775
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||||||| |||| |||| ||||||||||||| ||||||||||| |||||||||||    
T  34252717 cgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaattt 34252775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 19644502 - 19644450
Alignment:
Q  181 aaaatataagtaa-aattggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||||||||| ||||| |||||||||||||| |||||| |||||||||||    
T  19644502 aaaatataagtaagaattgatcaacaaaaattaacgtatttggttcaaaattt 19644450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 23344907 - 23344939
Alignment:
Q  200 tcaacaaaaattaatgtatttagttcaaaattt 232  Q
    |||||||||||||||||||||||||||||||||    
T  23344907 tcaacaaaaattaatgtatttagttcaaaattt 23344939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 20219495 - 20219554
Alignment:
Q  173 ttcgtcccaaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||| ||||| |||||||||||| ||||||||| ||||| |||||  ||||||||||    
T  20219495 ttcgtcctaaaatgtaagtaaaattgatcaacaaaagttaatatatttgattcaaaattt 20219554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 9956608 - 9956550
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||||||| ||||||||| ||||| ||||||| |||||||||||  ||||||||||    
T  9956608 cgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaattt 9956550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 39030581 - 39030622
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||    
T  39030581 aaaattggtcaacaaaagttaatgtatttggttaaaaatttg 39030622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 42324985 - 42324944
Alignment:
Q  180 caaaatataagtaaaa-ttggtcaacaaaaattaatgtattt 220  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  42324985 caaaatataagtaaaaattggtcaacaaaagttaatgtattt 42324944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 14611107 - 14611071
Alignment:
Q  193 aaattggtcaacaaaaattaatgtatttagttcaaaa 229  Q
    |||||||||||| |||||| |||||||||||||||||    
T  14611107 aaattggtcaactaaaatttatgtatttagttcaaaa 14611071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 16500575 - 16500615
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||| |||||||||||||||||| || |||||||||||    
T  16500575 aaaattgttcaacaaaaattaatgtaattggttcaaaattt 16500615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 44726902 - 44726834
Alignment:
Q  165 gtactcatttcgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||| |||||||    
T  44726902 gtactcatttcgtccaaaaatataagaaaaaattgatcaacaaaaattaatgtatttagtttaaaattt 44726834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 16180543 - 16180487
Alignment:
Q  177 tcccaaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  16180543 tcccaaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaattt 16180487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 17437236 - 17437177
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||  |||| || |||||||||||||||||||||||||||||||||||    
T  17437236 cgtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttg 17437177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 2884256 - 2884314
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  2884256 cgtcctaaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaattt 2884314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 10459268 - 10459325
Alignment:
Q  177 tcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||    
T  10459268 tcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttg 10459325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 31469071 - 31469130
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||| ||| ||||||||    
T  31469071 cgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttg 31469130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 33829389 - 33829448
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||  |||| ||||||||||||||||||| ||||| || |||||||||    
T  33829389 cgtcccaaaatataaacaaaaattggtcaacaaaaattaatatatttggtacaaaatttg 33829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 5713329 - 5713276
Alignment:
Q  181 aaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||| ||||||| ||||||| |||||||| ||||||| |||||||||||    
T  5713329 aaaatataaataaaatttggtcaaccaaaattaacgtatttaattcaaaatttg 5713276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 11386327 - 11386368
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||| ||||||||||||||| |||||| |||||||||||    
T  11386327 aaaattgatcaacaaaaattaatatatttaattcaaaatttg 11386368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 30517959 - 30517918
Alignment:
Q  180 caaaatataagtaaaa-ttggtcaacaaaaattaatgtattt 220  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  30517959 caaaatataagtaaaaatttgtcaacaaaaattaatgtattt 30517918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 41912169 - 41912128
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||| ||||||||||||||||||| | ||||||||||||    
T  41912169 aaaattgttcaacaaaaattaatgtatctggttcaaaatttg 41912128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 23971288 - 23971236
Alignment:
Q  181 aaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  23971288 aaaatataagaaaaattggtcaacaaaaataaatatatttagttcaaaatttg 23971236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 6803308 - 6803366
Alignment:
Q  176 gtcccaaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  6803308 gtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttg 6803366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 47967913 - 47967972
Alignment:
Q  175 cgtcccaaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||  |||||| |||||||||||||| |||||||||||| ||||||||    
T  47967913 cgtcccaaaatataaacaaaattcggtcaacaaaaatttatgtatttagtttaaaatttg 47967972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 18732099 - 18732042
Alignment:
Q  175 cgtcccaaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||||| |||||||||||    
T  18732099 cgtcctaaaatgtaagaaaaattggtcaataaaagttaatgtatttggttcaaaattt 18732042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 5026141 - 5026199
Alignment:
Q  176 gtcccaaaatataag-taaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||  ||||||||| ||||||| ||||| |||||||| |||||||||    
T  5026141 gtcccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttg 5026199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 16866493 - 16866452
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||    
T  16866493 aaaattggtcaacaaaagttaatgtatttggttaaaaatttg 16866452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 30794447 - 30794500
Alignment:
Q  181 aaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||||| ||||||||||| ||||| |||||  |||||||||||    
T  30794447 aaaatataagtaaaatttggtcaacaaaatttaatatatttgattcaaaatttg 30794500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 44816485 - 44816526
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||| |||||||| ||||||||||| ||||||||||||    
T  44816485 aaaattggccaacaaaagttaatgtatttggttcaaaatttg 44816526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 3694093 - 3694038
Alignment:
Q  179 ccaaaatataagta-aaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  3694093 ccaaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttg 3694038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 35310359 - 35310316
Alignment:
Q  178 cccaaaatataagtaaaa-ttggtcaacaaaaattaatgtattt 220  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  35310359 cccaaaatataagtaaaaattggtcaacaaaaattaatgtattt 35310316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 19758375 - 19758322
Alignment:
Q  181 aaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||    
T  19758375 aaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttg 19758322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 47543617 - 47543658
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  47543617 aaaattggtcaacaaaaattaatgaatttggttcaaaatttg 47543658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 3739924 - 3739865
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||| |||||||||| |||| ||||||||||||| ||||||||||| ||| ||||||||    
T  3739924 cgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttg 3739865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 30693335 - 30693394
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||| ||||||||| ||||| ||| |||||||||||||||||||||  |||||||||||    
T  30693335 cgtccgaaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttg 30693394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 10498413 - 10498377
Alignment:
Q  197 tggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  10498413 tggtcaacaaaaattaatatatttagtttaaaatttg 10498377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 684 - 627
Alignment:
Q  177 tcccaaaatataagt-aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||    
T  684 tcccaaaatataagtgaaaattagtcaacaaaagttattgtatttagttcaaaatttg 627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 31522719 - 31522659
Alignment:
Q  173 ttcgtcccaaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||| |||| ||||||||||||||||| |||||| ||||  |||||||||||    
T  31522719 ttcgtcccaaaatgtaagcaaaattggtcaacaaaagttaatgcatttgattcaaaatttg 31522659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 8437884 - 8437825
Alignment:
Q  175 cgtcccaaaatataagtaaaattg-gtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||  |||||||||||    
T  8437884 cgtctcaaaatataagtaaaatttagtcaacaaaaattaatgtatttgattcaaaatttg 8437825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 9829891 - 9829950
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||| |||||||||||||| || |||||||||||||||||||||| ||| ||||||||    
T  9829891 cgtccctaaatataagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttg 9829950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 1986204 - 1986262
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||    
T  1986204 cgtcctaaaatataagtaaaagttggtcaataaaaattaatgcatttagtttaaaattt 1986262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 2282416 - 2282453
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaa 229  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  2282416 aaaattggtcaacaaaagttaatgtatttagttcaaaa 2282453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 31323832 - 31323873
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  31323832 aaaattggtcaacaaaagttaatgtattttgttcaaaatttg 31323873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 28596080 - 28596131
Alignment:
Q  180 caaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaat 230  Q
    |||||| ||||||||| ||||||||||||||||||| ||||| |||||||||    
T  28596080 caaaatgtaagtaaaaattggtcaacaaaaattaatatatttggttcaaaat 28596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 35003759 - 35003818
Alignment:
Q  175 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||| ||||||||||||||| ||||| || ||||||||||||||||  |||||||||||    
T  35003759 cgtcctaaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttg 35003818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 7343351 - 7343294
Alignment:
Q  175 cgtcccaaaatataagt-aaaattggtcaacaaaaattaatgtatttagttcaaaatt 231  Q
    ||||| ||||||||||| ||||||| ||||||||| ||||| |||||| |||||||||    
T  7343351 cgtcctaaaatataagtaaaaattgatcaacaaaagttaatatatttatttcaaaatt 7343294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 14446697 - 14446754
Alignment:
Q  176 gtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    |||||||||| |||| |||| ||||||||||||| ||||||||| | |||||||||||    
T  14446697 gtcccaaaatgtaagcaaaagttggtcaacaaaagttaatgtatgttgttcaaaattt 14446754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 24640195 - 24640142
Alignment:
Q  180 caaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    |||||||| ||||||| ||| ||||||||| ||||| |||||||||||||||||    
T  24640195 caaaatattagtaaaagttgatcaacaaaagttaatttatttagttcaaaattt 24640142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 28004731 - 28004674
Alignment:
Q  177 tcccaaaatataagt-aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||  |||||| |||||||||| ||||||||||| | ||||||||||    
T  28004731 tcccaaaatataagggaaaattagtcaacaaaagttaatgtatttggctcaaaatttg 28004674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 15114635 - 15114676
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  15114635 aaaattggtcaacaaaaattaatgtatttgattcaaaatttg 15114676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 11196316 - 11196268
Alignment:
Q  185 tataagtaaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||| |||| || |||||||||||||||||||||| |||||||||||    
T  11196316 tataagcaaaactgatcaacaaaaattaatgtatttaattcaaaatttg 11196268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 44080779 - 44080727
Alignment:
Q  181 aaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||||||||||| ||| ||||||||||||||||||||||  |||||||||    
T  44080779 aaaatataagtaaaaattgatcaacaaaaattaatgtatttaactcaaaattt 44080727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 33557884 - 33557826
Alignment:
Q  176 gtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||| |||| |||||||||| ||| |||| |||| ||||||||||||||||||||||||    
T  33557884 gtcctaaaacataagtaaaaattgatcaataaaagttaatgtatttagttcaaaatttg 33557826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 13209982 - 13210023
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||    
T  13209982 aaaattgatcaacaaaagttaatgtatttggttcaaaatttg 13210023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 3956176 - 3956217
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  3956176 aaaattggtcaacaaaaataaatgtatttagtttaaaatttg 3956217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 26104236 - 26104277
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  26104236 aaaattggttaacaaaaactaatgtatttagttcaaaatttg 26104277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 31280161 - 31280214
Alignment:
Q  181 aaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||    
T  31280161 aaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttg 31280214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 47783065 - 47783137
Alignment:
Q  162 agtgtactcatttcgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||||| || | | ||||||| ||||||||| |||||||| |||| ||||||||||| ||||||||||||    
T  47783065 agtgtactccttccattccaaaatgtaagtaaaaattggtcaaaaaaagttaatgtatttggttcaaaatttg 47783137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 32221562 - 32221521
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    |||||| |||||||||| ||||||||||| ||||||||||||    
T  32221562 aaaattagtcaacaaaagttaatgtatttggttcaaaatttg 32221521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 40955796 - 40955837
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 233  Q
    ||||||| |||| |||||||| ||||||||||||||||||||    
T  40955796 aaaattgatcaataaaaattattgtatttagttcaaaatttg 40955837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 26914541 - 26914501
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||| ||||||||||||||||||| | |||||||||||    
T  26914541 aaaattgatcaacaaaaattaatgtatgtggttcaaaattt 26914501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 40905820 - 40905860
Alignment:
Q  192 aaaattggtcaacaaaaattaatgtatttagttcaaaattt 232  Q
    ||||||||||||||||| ||||| ||||| |||||||||||    
T  40905820 aaaattggtcaacaaaagttaatttatttggttcaaaattt 40905860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 46829154 - 46829106
Alignment:
Q  173 ttcgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtattt 220  Q
    ||||||| |||||||||| |||| ||||||||||||| |||||||||||    
T  46829154 ttcgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtattt 46829106  T

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