View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_54 (Length: 261)
Name: NF9369_low_54
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 105 - 257
Target Start/End: Complemental strand, 54552945 - 54552793
Alignment:
| Q |
105 |
cgaccagccattccattttgagaactgatgcaatacctgatttaataaactatgaattctcactcaacatcatccctcgttgcatctttacgaaggattc |
204 |
Q |
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| T |
54552945 |
cgaccagccattccattttgagaactgatgcaatacctgatttaataaactatgaattctcactcaacatcatccctcgttgcatctttacgaaggattc |
54552846 |
T |
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| Q |
205 |
aacccttcctgttggtcctctttgtatcaaaacatatgtttgttgatgtccat |
257 |
Q |
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| T |
54552845 |
aacccttcctgttggtcctctttgtatcaaaacatatgtttgttgatgtccat |
54552793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 54553049 - 54552977
Alignment:
| Q |
1 |
ccgtatcatatcttcatcatgaatgtattccacctattgttcacaggtatttctggatttcccttatttattc |
73 |
Q |
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| T |
54553049 |
ccgtatcatatcttcatcatgaatgtattccacctattgttcacaggtatttctggatttcccttatttattc |
54552977 |
T |
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