View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9369_low_55 (Length: 253)
Name: NF9369_low_55
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 8698454 - 8698209
Alignment:
| Q |
1 |
ccatcaagtacactctgatg-tcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcacca |
99 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8698454 |
ccatcaggtacactctgatggtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcacca |
8698355 |
T |
|
| Q |
100 |
aagtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgat |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8698354 |
gagtgtcacattttggatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgat |
8698255 |
T |
|
| Q |
200 |
ctctttcatggcatcattgaatgcattttcataggttgcctttgct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
8698254 |
atctttcatggcatcattgaatgcattttcatatgttgcttttgct |
8698209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19836137 - 19836044
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttatt |
94 |
Q |
| |
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|||||| ||| | |||||||||||||||||| || || | |||||| ||||||| |||| ||| ||||||||||| | ||||||||||||||| |
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| T |
19836137 |
ccatcatgtaaattctgatgtcctcacacatagtgacaattggctttcctctagggatgacaattgttgagttaaaagcctctgacatgttatt |
19836044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 20597454 - 20597210
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20597454 |
ccatcaggtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccag |
20597355 |
T |
|
| Q |
101 |
agtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
20597354 |
agtgtcacatttttgatcaccagtgaatttgtgtttgctccaatgcttggcatgaatgtttttgagatactcatatgctccttcccttatatccttgatc |
20597255 |
T |
|
| Q |
201 |
tctttcatggcatcattgaatgcattttcataggttgcctttgct |
245 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
20597254 |
tctttcatggcatcaatgaatgcattttcataagttgcttttgct |
20597210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 20623447 - 20623216
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaa |
100 |
Q |
| |
|
|||||||||| ||||| || |||||| |||| ||||||||||| || || |||||||| | ||| || || || || | ||||||||||||||||||| |
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|
| T |
20623447 |
ccatcaagtatactctaatttcctcaaacattgtcaccactggttttcccctagctataacaatggtagaattgaaggcttctgacatgttattcaccag |
20623348 |
T |
|
| Q |
101 |
agtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatc |
200 |
Q |
| |
|
|||||||||| | ||| |||||| || ||||||||||| | ||||| || || | ||||| ||||| |||||||||||||| || || ||| |
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|
| T |
20623347 |
agtgtcacatagtggtccactagtgaacttagacttgctccaatgtcttgcagggattttcataagatattcataagctccttcacttatctcttttatc |
20623248 |
T |
|
| Q |
201 |
tctttcatggcatcattgaatgcattttcata |
232 |
Q |
| |
|
||| ||| ||||||||||||||||| ||||| |
|
|
| T |
20623247 |
tctgccattgcatcattgaatgcattatcata |
20623216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 37102027 - 37102107
Alignment:
| Q |
165 |
agatactcatatgctccttcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttgcctttgct |
245 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||||| ||||| ||||||| |||||||| |||| | |||||||||| |
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|
| T |
37102027 |
agatactcatacgctccttcacttatggctttaatctcattcataacatcattaaatgcattgtcatgtgatgcctttgct |
37102107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 23331830 - 23331586
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaa |
100 |
Q |
| |
|
|||||||||| ||||| || |||||| |||| ||||||||||| || || |||||||| | ||| || || || || | ||| ||||||||||||||| |
|
|
| T |
23331830 |
ccatcaagtatactctaatttcctcaaacattgtcaccactggttttcccctagctataacaatggtagaattgaaggcttctaacatgttattcaccag |
23331731 |
T |
|
| Q |
101 |
agtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatc |
200 |
Q |
| |
|
|||||||||| | ||| |||||| || ||||||||||| | ||||| || || | ||||| ||||| |||||||||||||| | || ||| |
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|
| T |
23331730 |
agtgtcacatagtggtccactagtgaacttagacttgctccaatgtcttgcagggattttcataagatattcataagctccttcacttatctgttttatc |
23331631 |
T |
|
| Q |
201 |
tctttcatggcatcattgaatgcattttcataggttgcctttgct |
245 |
Q |
| |
|
||| ||| ||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
23331630 |
tctgccattgcatcattgaatgcattatcataactggcctttgct |
23331586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 24506376 - 24506273
Alignment:
| Q |
138 |
ctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttg |
237 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||||| || || ||| ||||| ||||||||||| ||||||| |||||||||||||| ||| |
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|
| T |
24506376 |
ctccaatgcttagcaggaatcaatttgaggtaatcatatgcaggttgacatatgtcctttatctctttcattgcatcatcaaatgcattttcataagtta |
24506277 |
T |
|
| Q |
238 |
cctt |
241 |
Q |
| |
|
|||| |
|
|
| T |
24506276 |
cctt |
24506273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 20067505 - 20067397
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaa |
100 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| ||||||||||| || ||| | ||||| || ||||||||||||| || ||||||||||| ||||| |
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|
| T |
20067505 |
ccatcaaatacactctaatgtcttcacacatcgtcaccactggttttgatcttggaatgatgatggttgagttaaatgcttcggacatgttattaaccaa |
20067406 |
T |
|
| Q |
101 |
agtgtcaca |
109 |
Q |
| |
|
|| ||||| |
|
|
| T |
20067405 |
tgtatcaca |
20067397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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