View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_57 (Length: 250)
Name: NF9369_low_57
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35181527 - 35181292
Alignment:
| Q |
1 |
aataaacatattccttggacctcataagtctatacacaacttaagtgtttgtgtgcaagtacataaaatgatccgaaattgaagttatggtgtcaagatg |
100 |
Q |
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| T |
35181527 |
aataaacatattccttggacctcagaagtctatacacaacttaagagtttgtgtgcaagtacagaaaatgatccgaaattgaagttatggtgtcaagatg |
35181428 |
T |
|
| Q |
101 |
ataaacaaccatgagtgttgtccaaaatccaagcatgatgagcaacttaagtgtttgtttacagactatagtccattcgagttgtccctttgaaagctat |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
35181427 |
ataaacaaccaagagtgttgtccaaaatccaagcatgatgagcaacttaagtgtttgtttacagactatattcccttcgagttgtccctttgaaagctat |
35181328 |
T |
|
| Q |
201 |
agagtgatgatgatcattgtgtcatacttgagtggtctctgc |
242 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
35181327 |
agag------tgatcattgtgtcatacttgagtggtctctgc |
35181292 |
T |
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