View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_62 (Length: 243)

Name: NF9369_low_62
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_62
NF9369_low_62
[»] chr7 (7 HSPs)
chr7 (19-243)||(18977590-18977813)
chr7 (19-131)||(37706436-37706547)
chr7 (21-62)||(14305100-14305141)
chr7 (21-66)||(24389613-24389658)
chr7 (31-67)||(7669396-7669432)
chr7 (21-69)||(25342507-25342555)
chr7 (21-69)||(25343313-25343361)
[»] chr2 (4 HSPs)
chr2 (29-243)||(24934417-24934630)
chr2 (21-66)||(26752719-26752764)
chr2 (21-69)||(1297116-1297164)
chr2 (21-69)||(9275597-9275645)
[»] chr6 (1 HSPs)
chr6 (34-239)||(9365741-9365949)
[»] chr1 (3 HSPs)
chr1 (21-67)||(30931898-30931944)
chr1 (19-64)||(25468518-25468563)
chr1 (22-62)||(24992745-24992785)
[»] chr8 (3 HSPs)
chr8 (21-64)||(14825654-14825697)
chr8 (21-66)||(27441477-27441522)
chr8 (21-69)||(38576295-38576343)
[»] chr4 (2 HSPs)
chr4 (21-66)||(31329714-31329759)
chr4 (30-62)||(45920323-45920355)
[»] chr3 (1 HSPs)
chr3 (21-66)||(46150726-46150771)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 18977813 - 18977590
Alignment:
Q  19 cattgacactaggtgtcaacggattcattaacatcaaatcttaaccatcaannnnnnnaatccaaaggttgtaattgtttcttaaattaactcaggtgag 118  Q
    ||||||||| |||||||||||||||| |||||| ||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  18977813 cattgacaccaggtgtcaacggattcgttaacaccaaatctcaaccatcaatttttttaatccaaaggttgtaattgtttcttaaattaactcaggtgag 18977714  T
Q  119 ccttcatcatatactttcatatgatcacacactcattaaacgaacaacaatggaagcatgtatgttctgactgatctcaactacacaatcacctctagtc 218  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  18977713 ccttcaccatatactttcatatgatcacacactcattaaacgaacaacaatggaagcatgtatgttctgactaatctcaactac-caatcacctctagtc 18977615  T
Q  219 ctgattcatgccaatcaaagatagc 243  Q
     |||||||| |||||||||||||||    
T  18977614 ttgattcataccaatcaaagatagc 18977590  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 37706436 - 37706547
Alignment:
Q  19 cattgacactaggtgtcaacggattcattaacatcaaatcttaaccatcaannnnnnnaatccaaaggttgtaattgtttcttaaattaactcaggtgag 118  Q
    ||||||||| |||| ||||||||||| |||||| ||||| | |||||||||       ||||||||| ||||||||||||||||||||||||||||||||    
T  37706436 cattgacaccaggtatcaacggattcgttaacaccaaatttcaaccatcaatttttttaatccaaag-ttgtaattgtttcttaaattaactcaggtgag 37706534  T
Q  119 ccttcatcatata 131  Q
    |||||| ||||||    
T  37706535 ccttcaccatata 37706547  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 14305100 - 14305141
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaa 62  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  14305100 ttgacactaggtgtcaacggattcattgacaccaaatcttaa 14305141  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 24389658 - 24389613
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccat 66  Q
    ||||||| ||||||||||||||||||| ||| ||||||| ||||||    
T  24389658 ttgacaccaggtgtcaacggattcattgacaccaaatctcaaccat 24389613  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 7669432 - 7669396
Alignment:
Q  31 gtgtcaacggattcattaacatcaaatcttaaccatc 67  Q
    |||||||||||||| |||||| |||||||||||||||    
T  7669432 gtgtcaacggattcgttaacaccaaatcttaaccatc 7669396  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 25342507 - 25342555
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccatcaa 69  Q
    ||||||| |||||||||||||||| || ||| ||||||| |||||||||    
T  25342507 ttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaa 25342555  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 25343313 - 25343361
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccatcaa 69  Q
    ||||||| |||||||||||||||| || ||| ||||||| |||||||||    
T  25343313 ttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaa 25343361  T

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Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 29 - 243
Target Start/End: Complemental strand, 24934630 - 24934417
Alignment:
Q  29 aggtgtcaacggattcattaacatcaaatcttaaccatcaannnnnnnaatccaaaggttgtaattgtttcttaaattaactcaggtgagccttcatcat 128  Q
    |||||||||||||||| |||||| ||||||| |||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  24934630 aggtgtcaacggattcgttaacaccaaatctcaaccatcaatttttttaatccaaaggttgtaactgtttcttaaattaactcaggtgagccttcaccat 24934531  T
Q  129 atactttcatatgatcacacactcattaaacgaacaacaatggaagcatgtatgttctgactgatctcaactacacaatcacctctagtcctgattcatg 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||     
T  24934530 atactttcatatgatcacacactcattaaacgaacaacattggaagcatgtatgttctgactgatctaaactac-caatcacctcttgtcctgattcata 24934432  T
Q  229 ccaatcaaagatagc 243  Q
    |||||||||||||||    
T  24934431 ccaatcaaagatagc 24934417  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 26752764 - 26752719
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccat 66  Q
    ||||||| ||||||||||| |||| || ||||||||||||||||||    
T  26752764 ttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccat 26752719  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 1297164 - 1297116
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccatcaa 69  Q
    ||||||| |||||||||||||||| || ||| ||||||| |||||||||    
T  1297164 ttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaa 1297116  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 9275597 - 9275645
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccatcaa 69  Q
    ||||||| |||||||||||||||| || ||| ||||||| |||||||||    
T  9275597 ttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaa 9275645  T

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Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 9365741 - 9365949
Alignment:
Q  34 tcaacggattcattaacatcaaatcttaaccatcaannnnnnnaatccaaaggttgtaattgtttcttaaattaact----caggtgagccttcatcata 129  Q
    ||||||||||| || ||| ||||||| |||||||||       ||||||||||||||||||||||||||||||||||    || ||||||||||| |||     
T  9365741 tcaacggattcgttgacaccaaatctcaaccatcaatttttt-aatccaaaggttgtaattgtttcttaaattaactaactcacgtgagccttcaccatt 9365839  T
Q  130 tactttcatatgatcacacactcattaaacgaacaacaatggaagcatgtatgttctgactgatctcaactacacaatcacctctagtcctgattcatgc 229  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  9365840 tactttcatatgatcacaaactcattaaacgaacaacaatggaagtatgtatgttctaactgatctcaactacacaatcacctctagtcctgattcatac 9365939  T
Q  230 caatcaaaga 239  Q
    ||||||||||    
T  9365940 caatcaaaga 9365949  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 30931898 - 30931944
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccatc 67  Q
    ||||||| |||||||||||||||| |||||| |||||||||||||||    
T  30931898 ttgacaccaggtgtcaacggattcgttaacaccaaatcttaaccatc 30931944  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 25468518 - 25468563
Alignment:
Q  19 cattgacactaggtgtcaacggattcattaacatcaaatcttaacc 64  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| ||||    
T  25468518 cattgacaccaggtgtcaacggattcattgacaccaaatctcaacc 25468563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 24992785 - 24992745
Alignment:
Q  22 tgacactaggtgtcaacggattcattaacatcaaatcttaa 62  Q
    |||||| |||||||||||||||| || ||||||||||||||    
T  24992785 tgacaccaggtgtcaacggattcgttgacatcaaatcttaa 24992745  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 14825654 - 14825697
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaacc 64  Q
    |||||||||||||||||||||||| || |||||||||| |||||    
T  14825654 ttgacactaggtgtcaacggattcgttgacatcaaatcctaacc 14825697  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 27441477 - 27441522
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccat 66  Q
    ||||||| ||||||||||| |||| || ||||||||||||||||||    
T  27441477 ttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccat 27441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 38576343 - 38576295
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccatcaa 69  Q
    ||||||| |||||||||||||||| || ||| ||||||| |||||||||    
T  38576343 ttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaa 38576295  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 31329759 - 31329714
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccat 66  Q
    ||||||| |||||||||||||||| |||||| |||||| |||||||    
T  31329759 ttgacaccaggtgtcaacggattcgttaacaccaaatcctaaccat 31329714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 45920323 - 45920355
Alignment:
Q  30 ggtgtcaacggattcattaacatcaaatcttaa 62  Q
    |||||||||||||||||| ||||||||||||||    
T  45920323 ggtgtcaacggattcattgacatcaaatcttaa 45920355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 46150771 - 46150726
Alignment:
Q  21 ttgacactaggtgtcaacggattcattaacatcaaatcttaaccat 66  Q
    |||||||||||||||||||||||| || ||| ||||||| ||||||    
T  46150771 ttgacactaggtgtcaacggattcgttgacaccaaatctcaaccat 46150726  T

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