View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_67 (Length: 239)
Name: NF9369_low_67
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4598781 - 4599006
Alignment:
| Q |
1 |
taatttagtagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctct |
100 |
Q |
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| T |
4598781 |
taatttaatagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatccatgagcgcctct |
4598880 |
T |
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| Q |
101 |
tcgagtgacagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttc----nnnnnnnnnnttattagacaattgatttgatt |
196 |
Q |
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| T |
4598881 |
tcgagtgacagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttcaaaaaaaaataaaattattagacaattgatttgatt |
4598980 |
T |
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| Q |
197 |
aggaaagaaccaaaaaatattaaatg |
222 |
Q |
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| T |
4598981 |
aggaaagaaccaaaaaatattaaatg |
4599006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 4623302 - 4623447
Alignment:
| Q |
19 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
118 |
Q |
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| T |
4623302 |
agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga |
4623401 |
T |
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| Q |
119 |
tcattgtcctcgttcatacctatgatttaaatttattagaattttc |
164 |
Q |
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| T |
4623402 |
tcattgacttcattcatacctatgatttaaatttattagaattttc |
4623447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 25016030 - 25016140
Alignment:
| Q |
30 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
129 |
Q |
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| T |
25016030 |
tgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattgagctc |
25016129 |
T |
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| Q |
130 |
gttcataccta |
140 |
Q |
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|| |||||||| |
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| T |
25016130 |
gtccataccta |
25016140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 25037313 - 25037423
Alignment:
| Q |
30 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
129 |
Q |
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| T |
25037313 |
tgattgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatttaactc |
25037412 |
T |
|
| Q |
130 |
gttcataccta |
140 |
Q |
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|| |||||||| |
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| T |
25037413 |
gtccataccta |
25037423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 25002311 - 25002270
Alignment:
| Q |
46 |
ataatatagatgacgataatagtaatcaattctgttagtatc |
87 |
Q |
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| T |
25002311 |
ataataaagatgacgataaaagtaatcaattctgtcagtatc |
25002270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 18805701 - 18805556
Alignment:
| Q |
19 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
118 |
Q |
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||||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| | | |||||||||| | |||||||||||| || |||| | |
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| T |
18805701 |
agggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttgga |
18805602 |
T |
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| Q |
119 |
tcattgtcctcgttcatacctatgatttaaatttattagaattttc |
164 |
Q |
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|||| || ||| || | ||||||||||||||||||||||| ||||| |
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| T |
18805601 |
tcatcgtactcatttaaacctatgatttaaatttattagagttttc |
18805556 |
T |
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