View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_69 (Length: 238)
Name: NF9369_low_69
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35181559 - 35181781
Alignment:
| Q |
1 |
ctcattgctcataccaactacatgttgtttgttatgcattctgaatagaggttattacagcagatctttgtctaaagaagaacatagcttaaatcagcca |
100 |
Q |
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| T |
35181559 |
ctcactgctcataccaactacatgttgtttgttatgcattctgaatagaggttattacagcagatatttgtctaaagaagaacatagcataaatcagcca |
35181658 |
T |
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| Q |
101 |
aaaacattgtgcaggaaagactatagaagatgaagaatacatttccttggagaatccaatttataaattatagtgtcatgcatagcatacttcaaagaga |
200 |
Q |
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| T |
35181659 |
aaaacattgtgcaggaaagactatggaagatgaagaatacatttcgttggagaatccaatttataaattatagtgtcatgcatagcatacttcaaagaga |
35181758 |
T |
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| Q |
201 |
tttaagcatttgtctgttcaaag |
223 |
Q |
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| T |
35181759 |
tttaagcatttgtctgttcaaag |
35181781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 2321724 - 2321831
Alignment:
| Q |
74 |
aaagaagaacatagcttaaatcagccaaaaacattgtgcaggaaagactatagaagatgaagaatacatttccttggagaatccaatttataaattatag |
173 |
Q |
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||||||||||||| |||| ||| |||||||||| | |||||||||||||||| ||||||||||||| |||| |||||||||| |||| ||| |||||||| |
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| T |
2321724 |
aaagaagaacataccttagatctgccaaaaacagtatgcaggaaagactataaaagatgaagaataaattttcttggagaattcaatctatgaattatag |
2321823 |
T |
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| Q |
174 |
tgtcatgc |
181 |
Q |
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| T |
2321824 |
tatcatgc |
2321831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 9935455 - 9935557
Alignment:
| Q |
79 |
agaacatagcttaaatcagccaaaaacattgtgcaggaaagactatagaagatgaagaatacatttccttggagaatccaatttataaattatagtgtca |
178 |
Q |
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| T |
9935455 |
agaacatagcttagttcagccaaaaacagtatgcaggaaagactatagaagatgaagaatatatttccttggagaattcaatctatgtattatagtgtca |
9935554 |
T |
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| Q |
179 |
tgc |
181 |
Q |
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||| |
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| T |
9935555 |
tgc |
9935557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 9945100 - 9945154
Alignment:
| Q |
116 |
aaagactatagaagatgaagaatacatttccttggagaatccaatttataaatta |
170 |
Q |
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| T |
9945100 |
aaagactatagaagatgaagaataaatttccttggagaatccaatctatgaatta |
9945154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 9934714 - 9934769
Alignment:
| Q |
19 |
tacatgttgtttgttatgcattctgaatagaggttattacagcagatctttgtcta |
74 |
Q |
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||||||||| |||| || ||||||||||||||||| | |||||| ||||||||||| |
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| T |
9934714 |
tacatgttggttgtgatacattctgaatagaggttttgacagcaaatctttgtcta |
9934769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 9944971 - 9945024
Alignment:
| Q |
19 |
tacatgttgtttgttatgcattctgaatagaggttattacagcagatctttgtct |
73 |
Q |
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| T |
9944971 |
tacatgttggttgt-atacattctgaatagaggttatgacagcaaatctttgtct |
9945024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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