View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_7 (Length: 464)

Name: NF9369_low_7
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_7
NF9369_low_7
[»] chr1 (3 HSPs)
chr1 (18-460)||(17215413-17215858)
chr1 (18-285)||(17217249-17217515)
chr1 (378-417)||(17217670-17217709)
[»] chr8 (2 HSPs)
chr8 (30-278)||(24226612-24226863)
chr8 (318-356)||(24226993-24227031)
[»] chr3 (5 HSPs)
chr3 (18-203)||(424424-424611)
chr3 (46-194)||(424950-425099)
chr3 (378-460)||(425300-425382)
chr3 (194-274)||(425055-425137)
chr3 (287-356)||(425247-425315)
[»] chr4 (5 HSPs)
chr4 (19-213)||(14242842-14243037)
chr4 (153-203)||(14243021-14243071)
chr4 (153-208)||(14243191-14243246)
chr4 (318-356)||(14243377-14243415)
chr4 (180-213)||(14243174-14243207)
[»] chr2 (7 HSPs)
chr2 (19-213)||(6353392-6353587)
chr2 (153-203)||(6353571-6353621)
chr2 (153-208)||(6353741-6353796)
chr2 (318-356)||(6353927-6353965)
chr2 (48-118)||(7562687-7562757)
chr2 (180-213)||(6353724-6353757)
chr2 (164-205)||(7562806-7562847)
[»] chr5 (5 HSPs)
chr5 (164-213)||(3011096-3011145)
chr5 (19-118)||(3010989-3011092)
chr5 (153-236)||(3011165-3011254)
chr5 (153-203)||(3011214-3011263)
chr5 (164-205)||(8767705-8767746)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 17215858 - 17215413
Alignment:
18 cattctagtaacaatatgttgttcaattaagtattgtcaaaggctgcatgttattggatgaatcaggaaaagagaatgagagctttggtgaaagtttgat 117  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||    
17215858 cattctaggaacaatatgttgttcaataaagtattgtcaaaggctgcaggttattggatgaatcaagaaaagagaatgagagctttggtcaaagtttgat 17215759  T
118 gaattatgatgccatgttactaggtgcttttatat-ttttgttactatctacttcaagacaattttacaatttctgcatgttttgttactatctact--g 214  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||  |    
17215758 gaattatgatgccatgttactaggtgcttttatatgttttgttactatctacttcaaaacaattttacagtttctgcatgttttgttactatctacttcg 17215659  T
215 tgacagttttacagtttctgcaattattgattaagacaatatgttggttttggattgtgacatggataattcattataattgcttcgaggtcaatattag 314  Q
    |||||||||||| |||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
17215658 tgacagttttacggtttcaacaattattgattaagacaatatgttgattttggattgtgacatggataattcattataattgcttcgaggtcaatatcag 17215559  T
315 ttattttacactaaaacactaaataagacaatgacaatatatgcctnnnnnnnnnnnnnnnnngacaatgacaacatataccatgtatggttttaacaac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||| |||||||||||||||||||    
17215558 ttattttacactaaaacactaaataagacaatgacaatatatgccttaaaaaaaaaaaaaaaagacaatgacaacatatatcatgtatggttttaacaac 17215459  T
415 atacctttgtctgatatcaatgtgtggatggcttgaccaccaaact 460  Q
    |||||| | |||||||||||||||||||||||||||||||||||||    
17215458 atacctctatctgatatcaatgtgtggatggcttgaccaccaaact 17215413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 17217249 - 17217515
Alignment:
18 cattctagtaacaatatgttgttcaattaagtattgtcaaaggctgcatgttattggatga---atcaggaaaag------agaatgagagctttggtga 108  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||   |||||||||||      |||| ||||||||||||||    
17217249 cattctagtaacaatatggtgttcaatgaagtaatgtcaaaggctgcaagttattggatgatggatcaggaaaaggaaaagagaaggagagctttggtga 17217348  T
109 aagtttgatgaattatgatgccatgttactaggtgcttttatat-ttttgttactatctacttcaagacaattttacaatttctgcatgttttgttacta 207  Q
    ||          |||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||    
17217349 aa----------ttatgatgtcatgttactagctgcttttatatgttttgttactatctacttcgagacaattttacagtttctgcatgttttattacta 17217438  T
208 tcta-ctgtgacagttttacagtttctgcaattattgattaagacaatatgttggttttggattgtgacatggataatt 285  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
17217439 tctatttgtgacagttttacagtttctgcaattattgattaagaca--atgttagttttggattgtgacatggataatt 17217515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 417
Target Start/End: Original strand, 17217670 - 17217709
Alignment:
378 gacaatgacaacatataccatgtatggttttaacaacata 417  Q
    |||||||||| |||||| ||||||||||||||||||||||    
17217670 gacaatgacatcatatatcatgtatggttttaacaacata 17217709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 24226612 - 24226863
Alignment:
30 aatatgttgttcaattaagtattgtcaaaggctgcatgttattggatgaatcaggaaaagagaatgagagctttggtgaaagtttgatgaattatgatgc 129  Q
    ||||||||||||||| ||||||| ||||||| |||| ||||||||||| ||||| |||||| || || |||||| ||||| ||||||||||||||||||     
24226612 aatatgttgttcaatgaagtattatcaaaggttgcaagttattggatggatcagaaaaagataaggaaagcttttgtgaaggtttgatgaattatgatgt 24226711  T
130 catgttactaggtgcttttatat-ttttgttactatctacttcaagacaattttacaatttctgcatgttttgttactatctact--gtgacagttttac 226  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| | ||| |||||||||||||||||||||||    |||  ||||||    
24226712 catgttactagttgcttttatatattttgttactatctacttcgagataattttatagtttatgcatgttttgttactatctacttcaagactattttac 24226811  T
227 agtttctgcaattattgattaagacaatatgttggttttggattgtgacatg 278  Q
     |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
24226812 ggtttctacaattcttgattaagacaatatgttggttttggattgtgacatg 24226863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 24226993 - 24227031
Alignment:
318 ttttacactaaaacactaaataagacaatgacaatatat 356  Q
    |||||||||||||||||||||||||||||||||| ||||    
24226993 ttttacactaaaacactaaataagacaatgacaacatat 24227031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 424611 - 424424
Alignment:
18 cattctagtaacaatatgttgttcaattaagtattgtcaaaggctgcatgttattggatgaatcaggaaaagagaatgagagctttggtgaaagtttgat 117  Q
    |||||||||||||||| |||||||||  |||||||||| |||||| || ||||||||||  ||||||||||||||| |||||||||| ||||||||||||    
424611 cattctagtaacaatacgttgttcaacgaagtattgtcgaaggcttcaagttattggatagatcaggaaaagagaaggagagctttgatgaaagtttgat 424512  T
118 gaattatgatgccatgttactaggtgcttttata--tttttgttactatctacttcaagacaattttacaatttctgcatgttttgtt 203  Q
    ||||||||||| ||||||||||| || |||||||  ||||||||| || ||||||| ||||||||||||| ||||||| || ||||||    
424511 gaattatgatgtcatgttactagctgtttttatatgtttttgttaataactacttcgagacaattttacagtttctgcttggtttgtt 424424  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 424950 - 425099
Alignment:
46 aagtattgtcaaaggctgcatgttattggatgaatcaggaaaagagaatgagagctttggtgaaagtttgatgaattatgatgccatgttactaggtgct 145  Q
    |||||||||||| | ||||| ||||||||||| || |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||  | ||    
424950 aagtattgtcaacgtctgcaagttattggatggattaggaaacgagaaggagagctttggtgaaagtttgatgaattatgatgtcatgttactaacttct 425049  T
146 tttatat-ttttgttactatctacttcaagacaattttacaatttctgca 194  Q
    ||||||| ||||| | ||||||||||| ||||||||||||| ||||||||    
425050 tttatatgttttggtgctatctacttcgagacaattttacagtttctgca 425099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 378 - 460
Target Start/End: Original strand, 425300 - 425382
Alignment:
378 gacaatgacaacatataccatgtatggttttaacaacatacctttgtctgatatcaatgtgtggatggcttgaccaccaaact 460  Q
    ||||||||||||||||| |||||||| | ||||||| |||||| | |||||||||||| ||||||||||||||||||||||||    
425300 gacaatgacaacatatatcatgtatgatattaacaatatacctctttctgatatcaatatgtggatggcttgaccaccaaact 425382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 425055 - 425137
Alignment:
194 atgttttgttactatctact--gtgacagttttacagtttctgcaattattgattaagacaatatgttggttttggattgtga 274  Q
    |||||||| | |||||||||  | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
425055 atgttttggtgctatctacttcgagacaattttacagtttctgcaattcttgattaagacaatatgttggttttggattgtga 425137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 425247 - 425315
Alignment:
287 attataattgcttcgaggtcaatattagttattttacactaaaacactaaataagacaatgacaatatat 356  Q
    |||||||| ||||||| |||||||| | || |||||||||||||||| ||||||||||||||||| ||||    
425247 attataatggcttcgacgtcaatatcattt-ttttacactaaaacacgaaataagacaatgacaacatat 425315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 14242842 - 14243037
Alignment:
19 attctagtaacaatatgttgttcaattaagtattgtcaaaggctgcatgttattggatgaatcaggaaaagagaatgagagctttggtgaaagtttgatg 118  Q
    |||||||||||||||| |||||||   | |||||| |||||||||||  |||||||| |  |||||| |||| || ||  |||||||| ||||| ||| |    
14242842 attctagtaacaatatattgttcatggaggtattgccaaaggctgcaaattattggaaggttcaggagaagaaaaggaaggctttggttaaagtctgagg 14242941  T
119 aattatgatgccatgttactaggtgcttttatat-ttttgttactatctacttcaagacaattttacaatttctgcatgttttgttactatctact 213  Q
    |||||||||| ||||| || || ||| ||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
14242942 aattatgatgtcatgtcaccagctgcgtttatttgttttgttactacctacttcgagacaattttacaatttctgcatgttttgtttctatctact 14243037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 14243021 - 14243071
Alignment:
153 ttttgttactatctacttcaagacaattttacaatttctgcatgttttgtt 203  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
14243021 ttttgtttctatctacttcgagacaaatttacaatttctgcatgttttgtt 14243071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 14243191 - 14243246
Alignment:
153 ttttgttactatctacttcaagacaattttacaatttctgcatgttttgttactat 208  Q
    ||||||| ||||||||||| |||||||||||||||  |||||||||||||| ||||    
14243191 ttttgtttctatctacttcgagacaattttacaatgcctgcatgttttgtttctat 14243246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 14243377 - 14243415
Alignment:
318 ttttacactaaaacactaaataagacaatgacaatatat 356  Q
    |||||||||||||||||||||||||||||||||| ||||    
14243377 ttttacactaaaacactaaataagacaatgacaacatat 14243415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 14243174 - 14243207
Alignment:
180 tttacaatttctgcatgttttgttactatctact 213  Q
    |||||||||||||||||||||||| |||||||||    
14243174 tttacaatttctgcatgttttgtttctatctact 14243207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 6353392 - 6353587
Alignment:
19 attctagtaacaatatgttgttcaattaagtattgtcaaaggctgcatgttattggatgaatcaggaaaagagaatgagagctttggtgaaagtttgatg 118  Q
    |||||||||||||||| |||||||   | |||||| |||||||||||  |||||||| |  |||||| |||| || ||  |||||||| ||||| ||| |    
6353392 attctagtaacaatatattgttcatggaggtattgccaaaggctgcaaattattggaaggttcaggagaagaaaaggaaggctttggttaaagtctgagg 6353491  T
119 aattatgatgccatgttactaggtgcttttatat-ttttgttactatctacttcaagacaattttacaatttctgcatgttttgttactatctact 213  Q
    |||||||||| ||||| || || ||| ||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
6353492 aattatgatgtcatgtcaccagctgcgtttatttgttttgttactacctacttcgagacaattttacaatttctgcatgttttgtttctatctact 6353587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 6353571 - 6353621
Alignment:
153 ttttgttactatctacttcaagacaattttacaatttctgcatgttttgtt 203  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
6353571 ttttgtttctatctacttcgagacaaatttacaatttctgcatgttttgtt 6353621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 6353741 - 6353796
Alignment:
153 ttttgttactatctacttcaagacaattttacaatttctgcatgttttgttactat 208  Q
    ||||||| ||||||||||| |||||||||||||||  |||||||||||||| ||||    
6353741 ttttgtttctatctacttcgagacaattttacaatgcctgcatgttttgtttctat 6353796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 6353927 - 6353965
Alignment:
318 ttttacactaaaacactaaataagacaatgacaatatat 356  Q
    |||||||||||||||||||||||||||||||||| ||||    
6353927 ttttacactaaaacactaaataagacaatgacaacatat 6353965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 7562687 - 7562757
Alignment:
48 gtattgtcaaaggctgcatgttattggatgaatcaggaaaagagaatgagagctttggtgaaagtttgatg 118  Q
    |||||| |||||||||||  |||||||| |  |||||||||||  | || |||||||||||||||||||||    
7562687 gtattgccaaaggctgcagattattggaaggttcaggaaaagaataggaaagctttggtgaaagtttgatg 7562757  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 6353724 - 6353757
Alignment:
180 tttacaatttctgcatgttttgttactatctact 213  Q
    |||||||||||||||||||||||| |||||||||    
6353724 tttacaatttctgcatgttttgtttctatctact 6353757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 7562806 - 7562847
Alignment:
164 tctacttcaagacaattttacaatttctgcatgttttgttac 205  Q
    |||||||  ||||||||||| |||||||||||||||||||||    
7562806 tctactttgagacaattttaaaatttctgcatgttttgttac 7562847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 3011096 - 3011145
Alignment:
164 tctacttcaagacaattttacaatttctgcatgttttgttactatctact 213  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||    
3011096 tctacttcaagacaattttacaatttctgcatgttttgtttttatctact 3011145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 3010989 - 3011092
Alignment:
19 attctagtaacaatatgttgttcaatt---aagtattgtcaaaggctgcatgttattggatgaatcaggaaaagagaatgagagc-tttggtgaaagttt 114  Q
    ||||||||||||||| ||||||||| |   | |||||| ||||||||||| ||||||||| |  ||||||||||| || || ||| ||||||||||||||    
3010989 attctagtaacaatacgttgttcaagtgtgatgtattgccaaaggctgcaagttattggaaggttcaggaaaagaaaaggaaagcttttggtgaaagttt 3011088  T
115 gatg 118  Q
    ||||    
3011089 gatg 3011092  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 3011165 - 3011254
Alignment:
153 ttttgttactatctacttcaagac----aattttacaa-tttctgcatgttttgttactatctac-tgtgacagttttacagtttctgca 236  Q
    |||||||||| |||||||||||||    |||||||||| ||||||||||||||||| |||||||| || |||| ||||||| ||||||||    
3011165 ttttgttactgtctacttcaagacaattaattttacaattttctgcatgttttgtttctatctacttgagacaattttacaatttctgca 3011254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 3011214 - 3011263
Alignment:
153 ttttgttactatctacttcaagacaattttacaatttctgcatgttttgtt 203  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||||    
3011214 ttttgtttctatctacttga-gacaattttacaatttctgcatgttttgtt 3011263  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 8767746 - 8767705
Alignment:
164 tctacttcaagacaattttacaatttctgcatgttttgttac 205  Q
    |||||||  |||||||||||||||||||||||||||||||||    
8767746 tctactttgagacaattttacaatttctgcatgttttgttac 8767705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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