View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_70 (Length: 228)
Name: NF9369_low_70
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_70 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 1314261 - 1314043
Alignment:
| Q |
1 |
atggatatatggatacgttgacgccgataataataatttaagtaaatgaggtaaatcaacttaatcacagtgtcatgcatgtgttacatagtttccaaca |
100 |
Q |
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| T |
1314261 |
atggatatatggatacgttgacaccgataataataatttaagtaaatgacatagttcaacttaatcacagtgtcatgcatgtgttacatagtttccaaca |
1314162 |
T |
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| Q |
101 |
agaaaatgatgagaattattagtacaaggttttaaaatgtggttgcgtagttattttagttatggaatcgttgaaactagaaa-aaaattgtgttacaac |
199 |
Q |
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| T |
1314161 |
agaaaatgatgagaattattagtacaaggttttaaactgtggtttcatagttattttagttatggaatcgttgaaactagaaaaaaaattgtgttacaac |
1314062 |
T |
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| Q |
200 |
ttttgtaaaattgtttgtt |
218 |
Q |
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| T |
1314061 |
tattgtaaaattgtttgtt |
1314043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 1295043 - 1294989
Alignment:
| Q |
101 |
agaaaatgatgagaattattagtacaaggttttaaaatgtggttgcgtagttatt |
155 |
Q |
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| T |
1295043 |
agaaaatgatgtgtataattagtacaaggttttaaattgtgattgcttagttatt |
1294989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 22953 - 22899
Alignment:
| Q |
101 |
agaaaatgatgagaattattagtacaaggttttaaaatgtggttgcgtagttatt |
155 |
Q |
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| T |
22953 |
agaaaatgatgtgtataattagtacaaggttttaaattgtgattgcttagttatt |
22899 |
T |
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