View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_72 (Length: 225)

Name: NF9369_low_72
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_72
NF9369_low_72
[»] chr2 (26 HSPs)
chr2 (2-143)||(11098820-11098961)
chr2 (2-143)||(14291551-14291692)
chr2 (2-143)||(9296294-9296435)
chr2 (3-140)||(3491816-3491952)
chr2 (2-140)||(25398561-25398698)
chr2 (2-140)||(25403699-25403836)
chr2 (2-140)||(25407688-25407825)
chr2 (1-123)||(40738915-40739036)
chr2 (1-140)||(28259072-28259208)
chr2 (25-143)||(39811894-39812010)
chr2 (26-143)||(32246851-32246966)
chr2 (1-140)||(36757657-36757793)
chr2 (82-140)||(23078445-23078501)
chr2 (27-140)||(42039588-42039700)
chr2 (174-210)||(25398497-25398533)
chr2 (174-210)||(40738845-40738881)
chr2 (1-140)||(8390045-8390181)
chr2 (1-140)||(10707148-10707283)
chr2 (1-140)||(13569394-13569530)
chr2 (59-143)||(44312563-44312646)
chr2 (174-210)||(3491752-3491788)
chr2 (27-140)||(8040126-8040240)
chr2 (174-210)||(11098986-11099022)
chr2 (174-210)||(14291490-14291526)
chr2 (174-210)||(25403635-25403671)
chr2 (174-210)||(44312671-44312707)
[»] chr8 (33 HSPs)
chr8 (2-143)||(36979440-36979581)
chr8 (2-142)||(30655710-30655850)
chr8 (2-143)||(18870454-18870596)
chr8 (2-143)||(4759968-4760109)
chr8 (2-143)||(10689035-10689177)
chr8 (2-143)||(18853060-18853202)
chr8 (2-140)||(1261848-1261985)
chr8 (3-140)||(31071124-31071260)
chr8 (2-143)||(33037701-33037840)
chr8 (1-143)||(6311360-6311503)
chr8 (2-123)||(26287974-26288093)
chr8 (2-123)||(26301231-26301350)
chr8 (2-123)||(26313225-26313344)
chr8 (25-143)||(7289831-7289948)
chr8 (25-143)||(25328184-25328300)
chr8 (1-140)||(7412407-7412542)
chr8 (1-140)||(19175649-19175785)
chr8 (1-140)||(4456094-4456230)
chr8 (82-137)||(19752368-19752422)
chr8 (174-210)||(1262013-1262049)
chr8 (174-210)||(6311299-6311335)
chr8 (174-210)||(7289973-7290009)
chr8 (174-210)||(10689202-10689238)
chr8 (174-210)||(18853227-18853263)
chr8 (82-140)||(23799551-23799608)
chr8 (174-210)||(25328325-25328361)
chr8 (174-210)||(26287903-26287939)
chr8 (174-210)||(26301160-26301196)
chr8 (174-210)||(26313154-26313190)
chr8 (174-210)||(30655648-30655684)
chr8 (174-210)||(33037865-33037901)
chr8 (174-210)||(36979379-36979415)
chr8 (174-210)||(39784869-39784905)
[»] chr4 (26 HSPs)
chr4 (2-143)||(24742003-24742144)
chr4 (2-143)||(29760704-29760844)
chr4 (1-140)||(31985528-31985665)
chr4 (2-123)||(28468432-28468553)
chr4 (25-143)||(51520520-51520637)
chr4 (25-143)||(9224312-9224429)
chr4 (25-143)||(9229099-9229216)
chr4 (26-143)||(45357203-45357318)
chr4 (26-143)||(45347723-45347839)
chr4 (25-135)||(3814094-3814202)
chr4 (1-140)||(5396566-5396702)
chr4 (3-140)||(5147743-5147878)
chr4 (82-140)||(3777615-3777671)
chr4 (1-123)||(8689391-8689509)
chr4 (29-143)||(5732728-5732839)
chr4 (174-210)||(28468588-28468624)
chr4 (174-210)||(45357343-45357379)
chr4 (83-140)||(36315205-36315260)
chr4 (83-140)||(36329414-36329469)
chr4 (174-210)||(3814026-3814062)
chr4 (174-210)||(5732667-5732703)
chr4 (174-210)||(9224454-9224490)
chr4 (174-210)||(18855729-18855765)
chr4 (174-210)||(24741942-24741978)
chr4 (174-210)||(29760643-29760679)
chr4 (174-210)||(45347864-45347900)
[»] chr6 (17 HSPs)
chr6 (2-143)||(5674662-5674804)
chr6 (1-123)||(22709091-22709212)
chr6 (25-143)||(11857037-11857154)
chr6 (25-143)||(22010602-22010719)
chr6 (25-143)||(14737482-14737598)
chr6 (25-143)||(14742342-14742458)
chr6 (1-140)||(21356102-21356239)
chr6 (26-143)||(28155477-28155591)
chr6 (25-92)||(28184617-28184684)
chr6 (1-140)||(5757373-5757509)
chr6 (176-210)||(14742485-14742519)
chr6 (30-132)||(6438573-6438674)
chr6 (174-210)||(5674829-5674865)
chr6 (174-210)||(22010744-22010780)
chr6 (174-210)||(28184507-28184543)
chr6 (64-123)||(31936660-31936717)
chr6 (174-210)||(33335989-33336025)
[»] chr3 (34 HSPs)
chr3 (2-143)||(7167307-7167448)
chr3 (2-143)||(8477425-8477568)
chr3 (2-143)||(2671479-2671620)
chr3 (1-140)||(26928483-26928622)
chr3 (2-143)||(40372689-40372829)
chr3 (2-143)||(8738956-8739097)
chr3 (2-143)||(9091194-9091335)
chr3 (1-140)||(32143387-32143525)
chr3 (2-143)||(28501590-28501731)
chr3 (2-143)||(28503757-28503898)
chr3 (1-140)||(27453024-27453162)
chr3 (3-137)||(1306017-1306150)
chr3 (1-140)||(27974836-27974973)
chr3 (25-143)||(22173100-22173217)
chr3 (1-123)||(27986340-27986460)
chr3 (27-140)||(6794623-6794734)
chr3 (1-123)||(33386559-33386680)
chr3 (1-140)||(16264416-16264551)
chr3 (1-140)||(40592667-40592803)
chr3 (1-140)||(35925546-35925680)
chr3 (29-143)||(18656498-18656609)
chr3 (174-210)||(26928650-26928686)
chr3 (82-140)||(8370451-8370507)
chr3 (83-140)||(21711289-21711344)
chr3 (174-210)||(1305950-1305986)
chr3 (174-210)||(2671645-2671681)
chr3 (174-210)||(7167246-7167282)
chr3 (174-210)||(8477364-8477400)
chr3 (174-210)||(8739122-8739158)
chr3 (174-210)||(9091360-9091396)
chr3 (174-210)||(18656437-18656473)
chr3 (174-210)||(22173242-22173278)
chr3 (174-210)||(28503923-28503959)
chr3 (174-210)||(40372854-40372890)
[»] chr7 (33 HSPs)
chr7 (2-143)||(1533336-1533478)
chr7 (2-143)||(2058028-2058170)
chr7 (2-136)||(21639878-21640011)
chr7 (6-140)||(21646072-21646205)
chr7 (2-143)||(20357440-20357581)
chr7 (3-140)||(18408829-18408964)
chr7 (3-140)||(18413705-18413840)
chr7 (24-143)||(12406394-12406512)
chr7 (25-92)||(12397024-12397091)
chr7 (1-140)||(44848579-44848715)
chr7 (3-140)||(21983350-21983486)
chr7 (1-140)||(2479402-2479538)
chr7 (25-143)||(24024232-24024348)
chr7 (25-143)||(31109489-31109605)
chr7 (82-137)||(9189982-9190036)
chr7 (64-137)||(2580459-2580530)
chr7 (3-138)||(21988974-21989108)
chr7 (1-140)||(29159869-29160006)
chr7 (1-106)||(47263764-47263868)
chr7 (30-92)||(21812149-21812210)
chr7 (82-123)||(9185149-9185189)
chr7 (174-210)||(1533503-1533539)
chr7 (174-210)||(2057967-2058003)
chr7 (174-210)||(4866732-4866768)
chr7 (174-210)||(12396913-12396949)
chr7 (174-210)||(12406333-12406369)
chr7 (174-210)||(18408765-18408801)
chr7 (174-210)||(18413642-18413678)
chr7 (174-210)||(19992315-19992351)
chr7 (174-210)||(21639810-21639846)
chr7 (174-210)||(21646008-21646044)
chr7 (174-210)||(24024373-24024409)
chr7 (174-210)||(31109630-31109666)
[»] chr5 (27 HSPs)
chr5 (2-146)||(24135908-24136051)
chr5 (6-140)||(35387728-35387861)
chr5 (2-140)||(38219464-38219601)
chr5 (9-140)||(38192239-38192369)
chr5 (2-143)||(31180277-31180417)
chr5 (2-143)||(30631469-30631609)
chr5 (1-140)||(15464598-15464736)
chr5 (25-143)||(1457067-1457184)
chr5 (1-140)||(36932243-36932381)
chr5 (25-143)||(27445033-27445150)
chr5 (25-143)||(27449877-27449994)
chr5 (25-143)||(43592342-43592459)
chr5 (25-143)||(43598787-43598904)
chr5 (25-143)||(43604279-43604396)
chr5 (25-143)||(43609771-43609888)
chr5 (1-140)||(14520296-14520432)
chr5 (25-143)||(15044749-15044865)
chr5 (1-140)||(9353227-9353363)
chr5 (30-132)||(28807485-28807585)
chr5 (27-140)||(12084096-12084206)
chr5 (82-140)||(10281817-10281874)
chr5 (82-136)||(11916946-11916999)
chr5 (174-210)||(24135850-24135886)
chr5 (174-210)||(31180216-31180252)
chr5 (174-210)||(38192175-38192211)
chr5 (174-210)||(38219400-38219436)
chr5 (174-210)||(43592281-43592317)
[»] chr1 (24 HSPs)
chr1 (2-140)||(24202663-24202800)
chr1 (2-143)||(24787257-24787398)
chr1 (2-140)||(19358737-19358874)
chr1 (2-140)||(19361326-19361463)
chr1 (2-140)||(19379966-19380103)
chr1 (2-100)||(19366202-19366300)
chr1 (1-139)||(3281775-3281909)
chr1 (1-140)||(13604517-13604654)
chr1 (1-140)||(26644793-26644928)
chr1 (25-143)||(41390644-41390760)
chr1 (25-143)||(41398299-41398415)
chr1 (2-136)||(21536466-21536596)
chr1 (82-137)||(32889508-32889562)
chr1 (26-143)||(25444996-25445111)
chr1 (1-140)||(37069836-37069969)
chr1 (26-92)||(25439803-25439868)
chr1 (30-132)||(44023785-44023886)
chr1 (174-210)||(1055058-1055094)
chr1 (174-210)||(24202828-24202864)
chr1 (174-210)||(24787423-24787459)
chr1 (174-210)||(25445136-25445172)
chr1 (174-210)||(39445502-39445538)
chr1 (174-210)||(44023920-44023956)
chr1 (27-140)||(47703855-47703967)
[»] scaffold0188 (4 HSPs)
scaffold0188 (2-140)||(17846-17983)
scaffold0188 (2-140)||(23939-24076)
scaffold0188 (174-210)||(18011-18047)
scaffold0188 (174-210)||(24104-24140)
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-140)||(8312-8450)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-140)||(133174-133311)
[»] scaffold0135 (1 HSPs)
scaffold0135 (25-143)||(34967-35084)
[»] scaffold0087 (2 HSPs)
scaffold0087 (1-140)||(36727-36863)
scaffold0087 (1-140)||(43856-43992)
[»] scaffold0355 (3 HSPs)
scaffold0355 (25-143)||(9549-9664)
scaffold0355 (25-92)||(3754-3820)
scaffold0355 (174-210)||(9689-9725)
[»] scaffold0036 (1 HSPs)
scaffold0036 (83-139)||(85750-85804)
[»] scaffold0464 (1 HSPs)
scaffold0464 (174-210)||(365-401)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 11098820 - 11098961
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  11098820 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgcaag 11098919  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11098920 ctattgtttcttgtaaccctttgtaacactttcatcatattg 11098961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 14291692 - 14291551
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| || |||||||||||||||| | |    
T  14291692 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaagg 14291593  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14291592 ctattgtttcttgtaaccctttgtaacactttcatcatattg 14291551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 9296294 - 9296435
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| || ||||||| |||||||| | |    
T  9296294 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtataagcttgaagg 9296393  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9296394 ctattgtttcttgtaaccctttgtaacactttcatcatattg 9296435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 3491952 - 3491816
Alignment:
Q  3 aagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagc 102  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  || |||||||||||||||||||||    
T  3491952 aagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagc 3491853  T
Q  103 tattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||| |||||||||||||||||||||||||||||||||    
T  3491852 tatt-tttcttgtaaccctttgtaacactttcatcata 3491816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 25398698 - 25398561
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||| |||||  || ||||||||||||||||||||    
T  25398698 aaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaag 25398599  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  25398598 ctatt-tttcttgtaaccctttgtaacactttcatcata 25398561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 25403836 - 25403699
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||| |||||  || ||||||||||||||||||||    
T  25403836 aaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaag 25403737  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  25403736 ctatt-tttcttgtaaccctttgtaacactttcatcata 25403699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 25407825 - 25407688
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||| |||||  || ||||||||||||||||||||    
T  25407825 aaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaag 25407726  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  25407725 ctatt-tttcttgtaaccctttgtaacactttcatcata 25407688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 40739036 - 40738915
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    |||||||| || | |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||| |  || |||||||||||||||||||    
T  40739036 aaaagcttactattgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaagacttgttcttgtgtaagcttgcaa 40738937  T
Q  101 gctattgtttcttgtaacccttt 123  Q
    |||||| ||||||||||| ||||    
T  40738936 gctatt-tttcttgtaacacttt 40738915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 28259072 - 28259208
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| |||| |||| |||| ||||||||| |||||| ||  |||||||  |||   || ||||||||||||||||||    
T  28259072 aaaagcttccttttgtgtcttctcttt-aggggtcattattgagagagtggg-aaacacaaatgggtagaaattagatcttgttcttgtgtaagcttgca 28259169  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  28259170 agctatt--ttcttgtaactctttgtaacactttcatcata 28259208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 39811894 - 39812010
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa-gcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||| ||||||| ||||| | ||||  ||  ||||||||| |||    
T  39811894 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagt--cttgtaacctttt 39811991  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  39811992 gtaacactttc-tcatattg 39812010  T

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Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 32246966 - 32246851
Alignment:
Q  26 tttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaaccctttg 124  Q
    ||||||||||||| |||||||||||| ||| |||||| |||| |||||||||||| ||| ||||| ||||||| ||||||  |  |||||||||| ||||    
T  32246966 tttagggttcatagtgtgagagtgggaaaataccaaagggtataatctagggtttgttcatgtgtaaagcttgaaagcta--gagtcttgtaaccttttg 32246869  T
Q  125 taacactttcatcatattg 143  Q
    |||||||||| ||||||||    
T  32246868 taacactttc-tcatattg 32246851  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 36757657 - 36757793
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| ||||||||| |||| ||||||||| || ||| ||  |||||||  |||| ||| |||||||||||||||| |    
T  36757657 aaaagcttccttttgtgtcttctcttt-agggttcatcattgagagagtgggtaa-cacaaatgggtagaaattaggttttgttcttgtgtaagcttgaa 36757754  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||| ||  ||||| |||| ||||| |||||||||||||||    
T  36757755 agctttt--ttcttataactctttgaaacactttcatcata 36757793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 23078445 - 23078501
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||||||||||||||||||||  ||||||||||| |||| ||||||||||||||||    
T  23078445 ttcttgtgtaagcttgcaagctat--tttcttgtaactctttctaacactttcatcata 23078501  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 42039588 - 42039700
Alignment:
Q  27 ttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgt 125  Q
    ||||| |||||||||||||||||||  | ||| |||||| |||||  ||||  || || |||||||||||||||||||| | ||||||||||| ||| ||    
T  42039588 ttaggattcatattgtgagagtgggtga-cacaaaatgggtagaaattaggtcttgtttttgtgtaagcttgcaagctaat-tttcttgtaactcttcgt 42039685  T
Q  126 aacactttcatcata 140  Q
    |||||||||||||||    
T  42039686 aacactttcatcata 42039700  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 25398533 - 25398497
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25398533 agattaggtcatattggctgaactgggtcaacaatct 25398497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 40738881 - 40738845
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40738881 agattaggtcatattggctgaactgggtcaacaatct 40738845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 8390045 - 8390181
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||||| |||| |||||||  ||| |||||||||||||||||||  | ||| |||||| |||||  ||||  || |||||||| ||||||| |    
T  8390045 aaaagcttcctcttgtgttttctctt--aggattcatattgtgagagtgggtga-cacaaaatgggtagaaattaggtcttgttcttgtgcaagcttgta 8390141  T
Q  100 agctattgtttcttgtaaccctttgt-aacactttcatcata 140  Q
    ||||| |  |||||||||| |||| | |||||||||||||||    
T  8390142 agctaat--ttcttgtaactcttttttaacactttcatcata 8390181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 10707148 - 10707283
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    ||||||||||| | |||| |||||||  ||| |||||||||||||||||||  | |||  |  |||||||  ||||  || |||||||||||||||| ||    
T  10707148 aaaagcttccttttgtgttttctctt--aggattcatattgtgagagtgggtga-cacagatgggtagaaattaggtcttgttcttgtgtaagcttgtaa 10707244  T
Q  101 gctattgtttcttgtaacccttt-gtaacactttcatcata 140  Q
    |||| |  |||||||||| |||| |||||||||||||||||    
T  10707245 gctaat--ttcttgtaactcttttgtaacactttcatcata 10707283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 13569530 - 13569394
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    ||||||||||| | |||| |||||||  ||| |||||||||||||||||||  |  | |||| |||||||  ||||  || ||||||||||| |||  ||    
T  13569530 aaaagcttccttttgtgttttctctt--aggattcatattgtgagagtgggtgacaaacaaagggtagaaattaggtcttgttcttgtgtaaacttataa 13569433  T
Q  101 gctattgtttcttgtaac-cctttgtaacactttcatcata 140  Q
    ||||   ||||||||||| | ||||||||||||||||||||    
T  13569432 gcta--atttcttgtaactcttttgtaacactttcatcata 13569394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 44312563 - 44312646
Alignment:
Q  59 caaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    |||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||||||||||||| ||||||||    
T  44312563 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttc-tcatattg 44312646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 3491788 - 3491752
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  3491788 agattaggccatattggctgaactgggtcaacaatct 3491752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 8040240 - 8040126
Alignment:
Q  27 ttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgcaagctattgtttcttgtaaccct---t 122  Q
    ||||| |||||||||||||||||||  | ||| |||||| |||||  ||||  || |||||||||||||||| |||||| |  |||||||||| ||   |    
T  8040240 ttaggattcatattgtgagagtgggtga-cacaaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaat--ttcttgtaactctcttt 8040144  T
Q  123 tgtaacactttcatcata 140  Q
    ||||||||||||||||||    
T  8040143 tgtaacactttcatcata 8040126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 11098986 - 11099022
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  11098986 agattaggccatattggctgaactgggtcaacaatct 11099022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 14291526 - 14291490
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  14291526 agattaggccatattggctgaactgggtcaacaatct 14291490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 25403671 - 25403635
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| |||||||||||||||||| |||||||||||    
T  25403671 agattaggtcatattggctgaactgagtcaacaatct 25403635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 44312671 - 44312707
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  44312671 agattaggccatattggctgaactgggtcaacaatct 44312707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 36979581 - 36979440
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |    
T  36979581 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgaagg 36979482  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36979481 ctattgtttcttgtaaccctttgtaacactttcatcatattg 36979440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 30655850 - 30655710
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |    
T  30655850 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgaagg 30655751  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatatt 142  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30655750 ctattgtttcttgtaaccctttgtaacactttcatcatatt 30655710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 18870454 - 18870596
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| | |    
T  18870454 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaataccaaagggtagaatctagggtttgttcttgtgtaagcttgaatg 18870553  T
Q  102 ctattgtttcttgtaaccc-tttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  18870554 ctattgtttcttgtaacccttttgtaacactttcattatattg 18870596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 4759968 - 4760109
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| || |||||||||||||||| | |    
T  4759968 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaagg 4760067  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4760068 ctattgtttcttgtaaccctttgtaacactttcatcatattg 4760109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 10689035 - 10689177
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| || |||||||||||||||| |     
T  10689035 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaacatatgggtagaatctagggcttgttcttgtgtaagcttgaag 10689134  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  10689135 gctattgtttcttgtaaccctctgtaacactttcatcatattg 10689177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 18853060 - 18853202
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||| | |    
T  18853060 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaataccaaagggtaaaatctagggtttgttcttgtgtaagcttgaatg 18853159  T
Q  102 ctattgtttcttgtaaccc-tttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  18853160 ctattgtttcttgtaacccttttgtaacactttcattatattg 18853202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 1261848 - 1261985
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  || | ||||||||||||||||||    
T  1261848 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgtacttgtgtaagcttgcaag 1261947  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  1261948 ctatt-tttcttgtaaccctttgtaacactttcatcata 1261985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 31071124 - 31071260
Alignment:
Q  3 aagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagc 102  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||  || |||||||||||||||||||||    
T  31071124 aagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagc 31071223  T
Q  103 tattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||| |||||||||||||||||||||||||||||||||    
T  31071224 tatt-tttcttgtaaccctttgtaacactttcatcata 31071260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 33037701 - 33037840
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |  ||||||||||||||||| |||||||||||||||| | |    
T  33037701 aaagcttcctctagtgtcttctcttt-agggttcatattgtgagagtggggaaacacatatgggtagaatctagggtttgttcttgtgtaagcttgaagg 33037799  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  33037800 ctattgtttcttgtaaccctttgtaacactttc-tcatattg 33037840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 6311503 - 6311360
Alignment:
Q  1 aaaagcttcctctagtgtcttctctttt--agggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttg 97  Q
    ||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||||    
T  6311503 aaaagcttcctctagtgacttctcttttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctaggg-tttgtcttgtgtaaagcttg 6311405  T
Q  98 caagctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
     | ||||  ||||||||||||| |||||||||||||| ||||||||    
T  6311404 aaggctagagtttcttgtaaccttttgtaacactttc-tcatattg 6311360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 26288093 - 26287974
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||| |||||  || ||||||||||||||||||||    
T  26288093 aaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaag 26287995  T
Q  102 ctattgtttcttgtaacccttt 123  Q
    ||||| ||||||||||| ||||    
T  26287994 ctatt-tttcttgtaacacttt 26287974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 26301350 - 26301231
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||| |||||  || ||||||||||||||||||||    
T  26301350 aaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaag 26301252  T
Q  102 ctattgtttcttgtaacccttt 123  Q
    ||||| ||||||||||| ||||    
T  26301251 ctatt-tttcttgtaacacttt 26301231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 26313344 - 26313225
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||| |||||  || ||||||||||||||||||||    
T  26313344 aaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaag 26313246  T
Q  102 ctattgtttcttgtaacccttt 123  Q
    ||||| ||||||||||| ||||    
T  26313245 ctatt-tttcttgtaacacttt 26313225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 7289831 - 7289948
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  7289831 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatatagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 7289929  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  7289930 gtaacactttc-tcatattg 7289948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 25328184 - 25328300
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa-gcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||| | ||||  ||  ||||||||| |||    
T  25328184 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagt--cttgtaacctttt 25328281  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  25328282 gtaacactttc-tcatattg 25328300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 7412542 - 7412407
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| |  |||||||||||  ||||||||| |||| ||||||||| |||||| ||  |||||||  ||||  || ||||||||||||||||||    
T  7412542 aaaagcttccttttatgtcttctctt--agggttcattattgagagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgca 7412446  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    || ||||  |||||||||| |||||||||||||||||||||    
T  7412445 agttatt--ttcttgtaactctttgtaacactttcatcata 7412407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 19175649 - 19175785
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatg-gtagaatctagggttttttcttgtgtaagcttgc 98  Q
    ||||| ||||| | ||||||||||||  ||||||||| |||| ||||||||| |||||| ||||| ||||||  ||||  || |||||||||||||||||    
T  19175649 aaaagtttccttttgtgtcttctctt--agggttcatcattgagagagtggg-aaacac-aaatgtgtagaagttaggtcttgttcttgtgtaagcttgc 19175744  T
Q  99 aagctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    | |||||| ||||||||||| |||||||||||||||||||||    
T  19175745 aggctatt-tttcttgtaactctttgtaacactttcatcata 19175785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4456230 - 4456094
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| ||||||||| |||| ||||||||| || ||| ||  |||||||  || |  || |||||||||||||||||     
T  4456230 aaaagcttccttttgtgtcttctcttt-agggttcatcattgagagagtgggtaa-cacaaatgggtagaaattatgtcttgttcttgtgtaagcttgcc 4456133  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  4456132 agctatt--ttcttgtaactctttgtaacactttcatcata 4456094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 19752368 - 19752422
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatc 137  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  19752368 ttcttgtgtaagcttgcaagctatt-tttcttgtaactcattgtaacactttcatc 19752422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 1262013 - 1262049
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| |||||||||| |||||||||||||||||||    
T  1262013 agattaggtcatattggttgaactgggtcaacaatct 1262049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 6311335 - 6311299
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  6311335 agattaggccatattggctgaactgggtcaacaatct 6311299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 7289973 - 7290009
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  7289973 agattaggccatattggctgaactgggtcaacaatct 7290009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 10689202 - 10689238
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  10689202 agattaggccatattggctgaactgggtcaacaatct 10689238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 18853227 - 18853263
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18853227 agattaggccatattggctgaactgggtcaacaatct 18853263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 23799551 - 23799608
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaacccttt-gtaacactttcatcata 140  Q
    |||||||||||||||| |||||| |  |||||||||| |||| |||||||||||||||||    
T  23799551 ttcttgtgtaagcttgtaagctaat--ttcttgtaactcttttgtaacactttcatcata 23799608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 25328325 - 25328361
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  25328325 agattaggccatattggctgaactgggtcaacaatct 25328361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 26287939 - 26287903
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  26287939 agattaggccatattggctgaactgggtcaacaatct 26287903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 26301196 - 26301160
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  26301196 agattaggccatattggctgaactgggtcaacaatct 26301160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 26313190 - 26313154
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  26313190 agattaggccatattggctgaactgggtcaacaatct 26313154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 30655684 - 30655648
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  30655684 agattaggccatattggctgaactgggtcaacaatct 30655648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 33037865 - 33037901
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  33037865 agattaggccatattggctgaactgggtcaacaatct 33037901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 36979415 - 36979379
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  36979415 agattaggccatattggctgaactgggtcaacaatct 36979379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 39784869 - 39784905
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  39784869 agattaggccatattggctgaactgggtcaacaatct 39784905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 24742144 - 24742003
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |    
T  24742144 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgaagg 24742045  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24742044 ctattgtttcttgtaaccctttgtaacactttcatcatattg 24742003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 29760844 - 29760704
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttt-tttcttgtgtaagcttgcaa 100  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| |||||||||||||  || |||||||||||||||||||     
T  29760844 aaagcttcctctagtgtcttctctt--agggttcatagtgtgagagtggggaaacaccaaagggtagaatctaggtcttgtttcttgtgtaagcttgcag 29760747  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29760746 gctattgtttcttgtaaccctttgtaacactttcatcatattg 29760704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 31985528 - 31985665
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||| ||  |||||||  ||||  || |||||||||||||||||||    
T  31985528 aaaagcttccttttgtgtcttctcttttagggttcacattgtgagagt-gggaaacacaaatgggtagaaattaggacttgttcttgtgtaagcttgcaa 31985626  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  31985627 gctatt-tttcttgtaaccctttgtaacactttcatcata 31985665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 28468432 - 28468553
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||  || || ||||||||||||||||     
T  28468432 aaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttattgtgtaagcttgcaaa 28468531  T
Q  102 ctattgtttcttgtaacccttt 123  Q
    ||||| ||||||||||| ||||    
T  28468532 ctattttttcttgtaacacttt 28468553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 51520637 - 51520520
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  51520637 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 51520539  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  51520538 gtaacactttc-tcatattg 51520520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 9224312 - 9224429
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||| ||||| ||||||| | ||||  | ||||| ||||| |||    
T  9224312 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaacctttt 9224410  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  9224411 gtaacactttc-tcatattg 9224429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 9229099 - 9229216
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||| ||||| ||||||| | ||||  | ||||| ||||| |||    
T  9229099 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaacctttt 9229197  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  9229198 gtaacactttc-tcatattg 9229216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 45357203 - 45357318
Alignment:
Q  26 tttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaaccctttg 124  Q
    ||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||| ||||| ||||||| ||||||  |  |||||||||| ||||    
T  45357203 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaagcta--gagtcttgtaaccttttg 45357300  T
Q  125 taacactttcatcatattg 143  Q
    |||||||||| ||||||||    
T  45357301 taacactttc-tcatattg 45357318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 45347723 - 45347839
Alignment:
Q  26 tttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaaccctttg 124  Q
    ||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  |  |||||||||| ||||    
T  45347723 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-gtcttgtaaccttttg 45347821  T
Q  125 taacactttcatcatattg 143  Q
    |||||||||| ||||||||    
T  45347822 taacactttc-tcatattg 45347839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 3814202 - 3814094
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||| ||||||||||| ||| ||||| ||||||| ||||||  |  |||||||||| |||    
T  3814202 ttttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaagcta--gagtcttgtaacctttt 3814106  T
Q  124 gtaacactttca 135  Q
    ||||||||||||    
T  3814105 gtaacactttca 3814094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 5396566 - 5396702
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    |||||||| || | ||||||||||||| ||||||||| |||| ||||||| | || ||| ||  |||||||  ||||  || ||||||||||||||||||    
T  5396566 aaaagctttcttttgtgtcttctcttt-agggttcatcattgagagagtgagtaa-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttgca 5396663  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||  ||||||||||| ||||| |||||||||||||||    
T  5396664 agctat--tttcttgtaactctttgcaacactttcatcata 5396702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 5147878 - 5147743
Alignment:
Q  3 aagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||| | |||| |||||||| |||||||||||||||||| ||||  | ||| |||||| |||||  ||||  || ||||||||||||||||||||    
T  5147878 aagcttccttttgtgttttctcttt-agggttcatattgtgagaatgggtga-cacaaaatgggtagaaattaggccttgttcttgtgtaagcttgcaag 5147781  T
Q  102 ctattgtttcttgtaac-cctttgtaacactttcatcata 140  Q
    ||||  |||||||||||   ||||||||||||||||||||    
T  5147780 ctat--tttcttgtaactattttgtaacactttcatcata 5147743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 3777671 - 3777615
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||||||| ||||||||||||  |||||||||| |||||||||||||||||||||    
T  3777671 ttcttgtgtaagtttgcaagctatt--ttcttgtaactctttgtaacactttcatcata 3777615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 8689391 - 8689509
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||| ||||| | ||||||||||||  ||||||||| |||| ||||||||| |||||| || ||||||||  ||||  || ||||||||||||||||||    
T  8689391 aaaagtttccttttgtgtcttctctt--agggttcatcattgagagagtggg-aaacacaaattggtagaaattaggtcttgttcttgtgtaagcttgca 8689487  T
Q  100 agctattgtttcttgtaacccttt 123  Q
    ||||||  ||||||||||| ||||    
T  8689488 agctat--tttcttgtaacacttt 8689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 5732839 - 5732728
Alignment:
Q  29 agggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa-gcttgcaagctattgtttcttgtaaccctttgtaa 127  Q
    |||||| ||| |||||||||||| ||| |||||| |||||| |||||||||| ||| ||||||| ||||| ||||||  ||  ||||||||| |||||||    
T  5732839 agggtttatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctagagt--cttgtaaccttttgtaa 5732743  T
Q  128 cactttcatcatattg 143  Q
    ||||||| ||||||||    
T  5732742 cactttc-tcatattg 5732728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 28468588 - 28468624
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| ||||||||||||||||||||||||||||||    
T  28468588 agattaggtcatattggctgaactgggtcaacaatct 28468624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 45357343 - 45357379
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||||| ||||||||||||||||||||||||||||    
T  45357343 agattatgccatattggctgaactgggtcaacaatct 45357379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 36315205 - 36315260
Alignment:
Q  83 tcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||||||||||  |||||| |  |||||||||| |||||||||||||||||||||    
T  36315205 tcttgtgtaagcttctaagctaat--ttcttgtaactctttgtaacactttcatcata 36315260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 36329414 - 36329469
Alignment:
Q  83 tcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||||||||||  |||||| |  |||||||||| |||||||||||||||||||||    
T  36329414 tcttgtgtaagcttctaagctaat--ttcttgtaactctttgtaacactttcatcata 36329469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 3814062 - 3814026
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  3814062 agattaggccatattggctgaactgggtcaacaatct 3814026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 5732703 - 5732667
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  5732703 agattaggccatattggctgaactgggtcaacaatct 5732667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 9224454 - 9224490
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  9224454 agattaggccatattggctgaactgggtcaacaatct 9224490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 18855765 - 18855729
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18855765 agattaggccatattggctgaactgggtcaacaatct 18855729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 24741978 - 24741942
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  24741978 agattaggccatattggctgaactgggtcaacaatct 24741942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 29760679 - 29760643
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  29760679 agattaggccatattggctgaactgggtcaacaatct 29760643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 45347864 - 45347900
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  45347864 agattaagccatattggctgaactgggtcaacaatct 45347900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 5674662 - 5674804
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagg-gttttttcttgtgtaagcttgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||    
T  5674662 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctaggtcttgtttcttgtgtaagcttgcaa 5674761  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5674762 gctattgtttcttgtaaccctttgtaacactttcatcatattg 5674804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 22709212 - 22709091
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||  || |||||||||||||||||||    
T  22709212 aaaaacttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaa 22709113  T
Q  101 gctattgtttcttgtaacccttt 123  Q
    |||||| ||||||||||| ||||    
T  22709112 gctatt-tttcttgtaacacttt 22709091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 11857154 - 11857037
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  11857154 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 11857056  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  11857055 gtaacactttc-tcatattg 11857037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 22010602 - 22010719
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  22010602 ttttagggttcatattgtgagagtggggaaatatcaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 22010700  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  22010701 gtaacactttc-tcatattg 22010719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 14737482 - 14737598
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||| | ||| ||||||| | ||||  |  |||||||||| |||    
T  14737482 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggcta--gagtcttgtaacctttt 14737579  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  14737580 gtaacactttc-tcatattg 14737598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 14742342 - 14742458
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||| | ||| ||||||| | ||||  |  |||||||||| |||    
T  14742342 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggcta--gagtcttgtaacctttt 14742439  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  14742440 gtaacactttc-tcatattg 14742458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 21356239 - 21356102
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||| ||||| ||||||||| |||| ||||||| | |||||| ||  |||||||  ||||  || ||||||||||||||||||    
T  21356239 aaaagcttccttttgtgtcttttcttt-agggttcattattgagagagtgag-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgca 21356142  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    || |||| ||||||||||| ||| |||||||||||||||||    
T  21356141 agttatt-tttcttgtaactcttagtaacactttcatcata 21356102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 28155477 - 28155591
Alignment:
Q  26 tttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaaccctttg 124  Q
    ||||||||||||| |||||||||||| ||| |||||| ||||| ||||||||||| ||| ||||| ||||||| ||||||    ||||||||||| ||||    
T  28155477 tttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaagcta--aattcttgtaaccttttg 28155573  T
Q  125 taacactttcatcatattg 143  Q
    |||||||||| ||||||||    
T  28155574 taacactttc-tcatattg 28155591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 28184684 - 28184617
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa 92  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||| |||||||    
T  28184684 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaa 28184617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 5757373 - 5757509
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    |||||||||||   ||||||||||||| ||||||||| |||| ||||| | |||| ||| ||  |||||||  ||||  || ||||||| ||||||||||    
T  5757373 aaaagcttccttccgtgtcttctcttt-agggttcattattgagagagagtggaa-cacaaatgggtagaaattaggtcttgttcttgtataagcttgca 5757470  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  5757471 agctatt--ttcttgtaactctttgtaacactttcatcata 5757509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 14742485 - 14742519
Alignment:
Q  176 attatgtcatattggctgaactgggtcaacaatct 210  Q
    |||| ||||||||||||||||||||||||||||||    
T  14742485 attaggtcatattggctgaactgggtcaacaatct 14742519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 6438674 - 6438573
Alignment:
Q  30 gggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttg-caagctattgtttcttgtaaccctttgtaa 127  Q
    ||||||||| |||||||||||| ||| |||||| |||||  |||||||||| ||| ||||| ||||||| |||||||  |  |||||||||| |||||||    
T  6438674 gggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaaagcttgacaagcta--gagtcttgtaaccttttgtaa 6438578  T
Q  128 cactt 132  Q
    |||||    
T  6438577 cactt 6438573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 5674829 - 5674865
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  5674829 agattaggccatattggctgaactgggtcaacaatct 5674865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 22010744 - 22010780
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  22010744 agattaggccatattggctgaactgggtcaacaatct 22010780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 28184543 - 28184507
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  28184543 agattaggccatattggctgaactgggtcaacaatct 28184507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 31936717 - 31936660
Alignment:
Q  64 ggtagaatctagggttttttcttgtgtaagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||  |||| ||| ||||||||||||||||||||||||  ||||||||||| ||||    
T  31936717 ggtagaaattaggatttgttcttgtgtaagcttgcaagctat--tttcttgtaacacttt 31936660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 33335989 - 33336025
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| |||| |||||||||||||||||||||||||    
T  33335989 agattaggtcacattggctgaactgggtcaacaatct 33336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 7167448 - 7167307
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| | |    
T  7167448 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaataccaaagggtagaatctagggtttgttcttgtgtaagcttgaagg 7167349  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7167348 ctattgtttcttgtaaccctttgtaacactttcatcatattg 7167307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 8477568 - 8477425
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgggg-aaacaccaaatggtagaatctagggttt-tttcttgtgtaagcttgca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||  || ||| |||||||||||||||    
T  8477568 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgggggaaacaccaaagggtagaatctaggtcttgtttattgtgtaagcttgca 8477469  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8477468 agctattgtttcttgtaaccctttgtaacactttcatcatattg 8477425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 2671479 - 2671620
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| ||  ||||||||||||||||||     
T  2671479 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttggtcttgtgtaagcttgcaat 2671578  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2671579 ctattgtttcttgtaaccctttgtaacactttcatcatattg 2671620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 26928483 - 26928622
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  || |||||||||||||||||||    
T  26928483 aaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaa 26928582  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  26928583 gctattttttcttgtaaccctttgtaacactttcatcata 26928622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 40372689 - 40372829
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |  |||||||||||||| || ||||||||||||||||||||    
T  40372689 aaagcttcctctagtgtcttctcttttagggttcatattatgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgcaag 40372788  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  40372789 ctatt-tttcttgtaaccctttgtaacactttcatcatattg 40372829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 8738956 - 8739097
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |  |||||||||||||| || |||||||||||||||| | |    
T  8738956 aaagcttcctctagtgtcttctcttctagggttcatattgtgagagtggggaaatacatatgggtagaatctagggattgttcttgtgtaagcttgaagg 8739055  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8739056 ctattgtttcttgtaaccctttgtaacactttcatcatattg 8739097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 9091194 - 9091335
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |  |||||||||||||| || |||||||||||||||| | |    
T  9091194 aaagcttcctctagtgtcttctcttctagggttcatattgtgagagtggggaaatacatatgggtagaatctagggattgttcttgtgtaagcttgaagg 9091293  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9091294 ctattgtttcttgtaaccctttgtaacactttcatcatattg 9091335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 32143525 - 32143387
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||  || |||||||||||||||||||    
T  32143525 aaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaa 32143426  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  32143425 gctatt-tttcttgtaaccctttgtaacactttcatcata 32143387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 28501590 - 28501731
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |     
T  28501590 aaagcttcctctagtgacttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttattcttgtgtaaagcttgaag 28501689  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||  ||||||||||||| |||||||||||||| ||||||||    
T  28501690 gctagagtttcttgtaaccttttgtaacactttc-tcatattg 28501731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 28503757 - 28503898
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |     
T  28503757 aaagcttcctctagtgacttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttattcttgtgtaaagcttgaag 28503856  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||  ||||||||||||| |||||||||||||| ||||||||    
T  28503857 gctagagtttcttgtaaccttttgtaacactttc-tcatattg 28503898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 27453162 - 27453024
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||  ||||  || |||||||||||||||||||    
T  27453162 aaaagcttccttttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaaaataggaattgttcttgtgtaagcttgcaa 27453063  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  27453062 gctatt-tttcttgtaaccctttgtaacactttcatcata 27453024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 1306150 - 1306017
Alignment:
Q  3 aagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagc 102  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  ||||||| ||| |  || ||||||||||||||||||| |    
T  1306150 aagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaaactatgacttgttcttgtgtaagcttgcaaac 1306051  T
Q  103 tattgtttcttgtaaccctttgtaacactttcatc 137  Q
    |||| ||||||||||||||||||||||||||||||    
T  1306050 tatt-tttcttgtaaccctttgtaacactttcatc 1306017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 27974836 - 27974973
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| ||||||||| |||| |||| |||| |||||| ||  |||||||  ||||  || ||||||||||||||||||    
T  27974836 aaaagcttccttttgtgtcttctcttt-agggttcattattgagagaatggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgca 27974933  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  27974934 agctatt-tttcttgtaactctttgtaacactttcatcata 27974973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 22173100 - 22173217
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  22173100 ttttagggttcatattaggagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 22173198  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  22173199 gtaacactttc-tcatattg 22173217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 27986340 - 27986460
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||| ||||||||| ||  |||||||  ||||  || |||||||||||||||||||    
T  27986340 aaaagcttccttttgtgtcttctcttttagggttgatattgagagagt-gggaaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaa 27986438  T
Q  101 gctattgtttcttgtaacccttt 123  Q
    ||| || ||||||||||| ||||    
T  27986439 gct-ttttttcttgtaacacttt 27986460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 6794623 - 6794734
Alignment:
Q  27 ttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgta 126  Q
    |||||||||||||||||||||||||  | ||| ||  |||||||  ||||  || ||||||||||||||||||||||| | ||||||||||| |||||||    
T  6794623 ttagggttcatattgtgagagtgggtga-cacaaatgggtagaaattaggacttgttcttgtgtaagcttgcaagctaat-tttcttgtaactctttgta 6794720  T
Q  127 acactttcatcata 140  Q
    ||||||||||||||    
T  6794721 acactttcatcata 6794734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 33386559 - 33386680
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttca-tattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | |||||||||||||||||||||| ||||| |||||| ||||||||| ||  |||||||  ||||  || ||||||||||||||||||    
T  33386559 aaaagcttccttttgtgtcttctcttttagggttcattattgagagagt-gggaaacacaaatgggtagaaattaggacttgttcttgtgtaagcttgca 33386657  T
Q  100 agctattgtttcttgtaacccttt 123  Q
    | ||||| ||||||||||| ||||    
T  33386658 aactatt-tttcttgtaacacttt 33386680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 16264551 - 16264416
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatg-gtagaatctagggttttttcttgtgtaagcttgc 98  Q
    ||||||||||| | ||||||||||||  ||||||||| |||| ||||||||| || ||| ||||| ||||||  ||||  || |||||||| ||||||||    
T  16264551 aaaagcttccttttgtgtcttctctt--agggttcatcattgagagagtgggtaa-cac-aaatgtgtagaaattaggtcttgttcttgtggaagcttgc 16264456  T
Q  99 aagctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  16264455 aagctatt--ttcttgtaactctttgtaacactttcatcata 16264416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 40592667 - 40592803
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | |||| |||||||  ||| |||||||||||||||||||  | ||| |||||| |||||  |||  ||| |||||||||||||||| |    
T  40592667 aaaagcttccttttgtgttttctctt--aggattcatattgtgagagtgggtga-cacaaaatgggtagaaattagattttgttcttgtgtaagcttgta 40592763  T
Q  100 agctattgtttcttgtaacccttt-gtaacactttcatcata 140  Q
    ||||| |  |||||||||| |||| |||||||||||||||||    
T  40592764 agctaat--ttcttgtaactcttttgtaacactttcatcata 40592803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 35925680 - 35925546
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    ||||||||||| | |||| |||||||  ||| |||||||||||||||||||  | ||| ||  |||||||  |||| ||| |||| ||||||||||  ||    
T  35925680 aaaagcttccttttgtgttttctctt--aggattcatattgtgagagtgggtga-cacaaatgggtagaaattaggttttgttctagtgtaagcttataa 35925584  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
     ||| |  |||||||||| |||||||||||||||||||||    
T  35925583 actaat--ttcttgtaactctttgtaacactttcatcata 35925546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 18656609 - 18656498
Alignment:
Q  29 agggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa-gcttgcaagctattgtttcttgtaaccctttgtaa 127  Q
    |||||| ||| |||||||||||| ||| |||||| |||||| |||||||||| ||| ||||||| ||||| | ||||  ||  ||||||||| |||||||    
T  18656609 agggtttatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaatgctagagt--cttgtaaccttttgtaa 18656513  T
Q  128 cactttcatcatattg 143  Q
    ||||||| ||||||||    
T  18656512 cactttc-tcatattg 18656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 26928650 - 26928686
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| ||||||||||||||||||||||||||||||    
T  26928650 agattaggtcatattggctgaactgggtcaacaatct 26928686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 8370451 - 8370507
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||||||||||  |||||| |  |||||||||| |||||||||||||||||||||    
T  8370451 ttcttgtgtaagcttttaagctaat--ttcttgtaactctttgtaacactttcatcata 8370507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 21711344 - 21711289
Alignment:
Q  83 tcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||||||||||  |||||| |  |||||||||| |||||||||||||||||||||    
T  21711344 tcttgtgtaagcttttaagctaat--ttcttgtaactctttgtaacactttcatcata 21711289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 1305986 - 1305950
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  1305986 agattaggccatattggctgaactgggtcaacaatct 1305950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 2671645 - 2671681
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  2671645 agattaggccatattggctgaactgggtcaacaatct 2671681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 7167282 - 7167246
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  7167282 agattaggccatattggctgaactgggtcaacaatct 7167246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 8477400 - 8477364
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  8477400 agattaggccatattggctgaactgggtcaacaatct 8477364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 8739122 - 8739158
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  8739122 agattaggccatattggctgaactgggtcaacaatct 8739158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 9091360 - 9091396
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  9091360 agattaggccatattggctgaactgggtcaacaatct 9091396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 18656473 - 18656437
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18656473 agattaggccatattggctgaactgggtcaacaatct 18656437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 22173242 - 22173278
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  22173242 agattaggccatattggctgaactgggtcaacaatct 22173278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 28503923 - 28503959
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  28503923 agattaggccatattggctgaactgggtcaacaatct 28503959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 40372854 - 40372890
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  40372854 agattaggccatattggctgaactgggtcaacaatct 40372890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 1533336 - 1533478
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagg-gttttttcttgtgtaagcttgcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||  || ||||||||||||||||||||    
T  1533336 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgggaaaacaccaaagggtagaatctaggtcttgtttcttgtgtaagcttgcaa 1533435  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1533436 gctattgtttcttgtaaccctttgtaacactttcatcatattg 1533478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 2058170 - 2058028
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| || |||||||||||||||| |     
T  2058170 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaacatatgggtagaatctagggcttgttcttgtgtaagcttgaat 2058071  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2058070 gctattgtttcttgtaaccctttgtaacactttcatcatattg 2058028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 21640011 - 21639878
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  || ||||||||||||||||||||    
T  21640011 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaag 21639912  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcat 136  Q
    ||||| |||||||||||||||||||||||||||||    
T  21639911 ctatt-tttcttgtaaccctttgtaacactttcat 21639878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 21646205 - 21646072
Alignment:
Q  6 cttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagctat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  || ||||||||||||||||||||||||    
T  21646205 cttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctat 21646106  T
Q  106 tgtttcttgtaaccctttgtaacactttcatcata 140  Q
    | |||||||||||||||| ||||||||||||||||    
T  21646105 t-tttcttgtaaccctttttaacactttcatcata 21646072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 20357440 - 20357581
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||  | ||||||||| ||||||| |     
T  20357440 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcatgttcttgtgtaaagcttgaag 20357539  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  20357540 gctattgtttcttgtaaccctttgtaacactttc-tcatattg 20357581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 18408964 - 18408829
Alignment:
Q  3 aagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagc 102  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||| |||||  || ||||||||||||||||||||     
T  18408964 aagcttcctcttgtgtcttc-cttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagt 18408866  T
Q  103 tattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18408865 tatt-tttcttgtaaccctttgtaacactttcatcata 18408829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 18413840 - 18413705
Alignment:
Q  3 aagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagc 102  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||| |||||  || ||||||||||||||||||| |    
T  18413840 aagcttcctcttgtgtcttc-cttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaatc 18413742  T
Q  103 tattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18413741 tatt-tttcttgtaaccctttgtaacactttcatcata 18413705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 12406512 - 12406394
Alignment:
Q  24 cttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaaccctt 122  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| ||    
T  12406512 cttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttt 12406414  T
Q  123 tgtaacactttcatcatattg 143  Q
    |||||||||||| ||||||||    
T  12406413 tgtaacactttc-tcatattg 12406394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 12397091 - 12397024
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa 92  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  12397091 ttttagggttcatattgtgatagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 12397024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 44848579 - 44848715
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| || |||||| |||| ||||||||| |||||| ||  |||||||  ||||  || ||||||||||||||||||    
T  44848579 aaaagcttccttttgtgtcttctcttt-agagttcattattgagagagtggg-aaacacaaatgggtagaaattaggtcttattcttgtgtaagcttgca 44848676  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||| ||  |||||||||| |||||||||||||||||||||    
T  44848677 agctttt--ttcttgtaactctttgtaacactttcatcata 44848715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 21983486 - 21983350
Alignment:
Q  3 aagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||| | |||| |||||||| |||||||||||| ||||||||||  | ||| |||||| ||||| |||||  || ||||||||||||||||||||    
T  21983486 aagcttccttttgtgttttctcttt-agggttcatattttgagagtgggtga-cacaaaatgggtagaaactaggtcttgttcttgtgtaagcttgcaag 21983389  T
Q  102 ctattgtttcttgtaaccc--tttgtaacactttcatcata 140  Q
    ||||  ||||||||||| |  ||||||||||||||||||||    
T  21983388 ctat--tttcttgtaactctttttgtaacactttcatcata 21983350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 2479538 - 2479402
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| |  | |||||||||| ||||||||| |||| ||||||||| ||||||  |  |||||||  ||||  || ||||||||||||||||||    
T  2479538 aaaagcttccttttatatcttctcttt-agggttcattattgagagagtggg-aaacacacatgggtagaaattaggtcttgttcttgtgtaagcttgca 2479441  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||  ||||| |||| |||||||||||||||||||||    
T  2479440 agctatt--ttcttataactctttgtaacactttcatcata 2479402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 24024232 - 24024348
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa-gcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||  |||||||||||| ||| |||||| ||||||||||||||||| ||| ||||||| ||||| | ||||  ||  ||||||||  |||    
T  24024232 ttttagggttcatcgtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagt--cttgtaacatttt 24024329  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  24024330 gtaacactttc-tcatattg 24024348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 31109489 - 31109605
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtg-taagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| |||||||||||| ||| | |||| ||||||||||||||||| ||| ||||  ||||||| | ||||  |  |||||||||| |||    
T  31109489 ttttagggttcatagtgtgagagtgggaaaatatcaaagggtagaatctagggtttgttcatgtgcaaagcttgaaggcta--gagtcttgtaacctttt 31109586  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  31109587 gtaacactttc-tcatattg 31109605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 9189982 - 9190036
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatc 137  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  9189982 ttcttgtgtaagcttgcaagctatt-tttcttgtaactcattgtaacactttcatc 9190036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 2580530 - 2580459
Alignment:
Q  64 ggtagaatctagggttttttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatc 137  Q
    ||||||| |||||  || ||||||||||||||||||||||||  ||||||||||| | ||||||||||||||||    
T  2580530 ggtagaaactaggacttgttcttgtgtaagcttgcaagctat--tttcttgtaactcattgtaacactttcatc 2580459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 21989108 - 21988974
Alignment:
Q  3 aagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||| || ||| |||||||| |||||||||||| | ||||||||  | ||| |||||| ||||| ||||| ||| ||||||| |||||||||||     
T  21989108 aagcttcctttattgttttctcttt-agggttcatatttttagagtgggtga-cacaaaatgggtagaaactaggttttattcttgtataagcttgcaat 21989011  T
Q  102 ctattgtttcttgtaaccc--tttgtaacactttcatca 138  Q
    ||||  ||||||||||| |  ||||||||||||||||||    
T  21989010 ctat--tttcttgtaactctttttgtaacactttcatca 21988974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 29160006 - 29159869
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggg-gaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | |||| |||||||  ||| ||||||||||||||||||| || |||  ||  |||||||  ||||  || |||||||||||||||| |    
T  29160006 aaaagcttccttttgtgttttctctt--aggattcatattgtgagagtgggtgacacaaaaatgggtagaaattaggtcttgttcttgtgtaagcttgta 29159909  T
Q  100 agctattgtttcttgtaacccttt-gtaacactttcatcata 140  Q
    ||||| |  |||||||||| |||| |||||||||||||||||    
T  29159908 agctaat--ttcttgtaactcttttgtaacactttcatcata 29159869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 47263868 - 47263764
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgc 98  Q
    ||||||||||| | ||||||||| ||| ||||||||| |||| ||||||||| |||||| |||||| |||||  ||||  || |||||||||||||||||    
T  47263868 aaaagcttccttttgtgtcttctattt-agggttcattattgagagagtggg-aaacac-aaatggatagaaattaggtcttgttcttgtgtaagcttgc 47263772  T
Q  99 aagctatt 106  Q
    ||||||||    
T  47263771 aagctatt 47263764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 21812149 - 21812210
Alignment:
Q  30 gggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa 92  Q
    ||||||||| |||||||||||| ||| |||||| ||||| ||||||||||| ||| |||||||    
T  21812149 gggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 21812210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 9185149 - 9185189
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  9185149 ttcttgtgtaagcttgcaagctatt-tttcttgtaacacttt 9185189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 1533503 - 1533539
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  1533503 agattaggccatattggctgaactgggtcaacaatct 1533539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 2058003 - 2057967
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  2058003 agattaggccatattggctgaactgggtcaacaatct 2057967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 4866768 - 4866732
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  4866768 agattaggccatattggctgaactgggtcaacaatct 4866732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 12396949 - 12396913
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  12396949 agattaggccatattggctgaactgggtcaacaatct 12396913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 12406369 - 12406333
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  12406369 agattaggccatattggctgaactgggtcaacaatct 12406333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 18408801 - 18408765
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18408801 agattaggccatattggctgaactgggtcaacaatct 18408765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 18413678 - 18413642
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18413678 agattaggccatattggctgaactgggtcaacaatct 18413642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 19992351 - 19992315
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  19992351 agattaggccatattggctgaactgggtcaacaatct 19992315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 21639846 - 21639810
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  21639846 agattaggccatattggctgaactgggtcaacaatct 21639810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 21646044 - 21646008
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  21646044 agattaggccatattggctgaactgggtcaacaatct 21646008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 24024373 - 24024409
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  24024373 agattaggccatattggctgaactgggtcaacaatct 24024409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 31109630 - 31109666
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  31109630 agattaggccatattggctgaactgggtcaacaatct 31109666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 24136051 - 24135908
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||    
T  24136051 aaagcttcctctagtgtcttctcttttagggttcacattgtgagagtggggaaacaccaaagggtagaatctaggacttgttcttgtgtaagcttgcaag 24135952  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcatattgcat 146  Q
    ||||| |||||||||||||||||||||||||||||| || |||||    
T  24135951 ctatt-tttcttgtaaccctttgtaacactttcatcttagtgcat 24135908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 35387861 - 35387728
Alignment:
Q  6 cttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagctat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||  || ||||||||||||||||||||||||    
T  35387861 cttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttattcttgtgtaagcttgcaagctat 35387762  T
Q  106 tgtttcttgtaaccctttgtaacactttcatcata 140  Q
    | |||||||||||||||||||||||||||||||||    
T  35387761 t-tttcttgtaaccctttgtaacactttcatcata 35387728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 38219601 - 38219464
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||  || ||||||||||||||||||||    
T  38219601 aaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaag 38219502  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  38219501 ctatt-tttcttgtaaccctttgtaacactttcatcata 38219464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 38192369 - 38192239
Alignment:
Q  9 cctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagctattgt 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||  || ||||||||||||||||||||||||| |    
T  38192369 cctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-t 38192271  T
Q  109 ttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||||||||||||||||||||||||||||    
T  38192270 ttcttgtaaccctttgtaacactttcatcata 38192239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 31180417 - 31180277
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaa 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||| |     
T  31180417 aaagcttcctctagtgtcttctcttttatggttcatattgtgagagtggggaaacaccaaagggtagaatctaggg-tttgtcttgtgtaaagcttgaag 31180319  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||  |||||||||||||||||||||||||||| ||||||||    
T  31180318 gctagagtttcttgtaaccctttgtaacactttc-tcatattg 31180277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 30631609 - 30631469
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaa 100  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||||||| |     
T  30631609 aaagcttcctctagtgacttctcttt-agggttcatattgtgagagtggggaaacaccaaagggtagaatctatggtttgttcatgtgtaaagcttgaag 30631511  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    ||||  |||||||||||||||||||||||||||| ||||||||    
T  30631510 gctagagtttcttgtaaccctttgtaacactttc-tcatattg 30631469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 15464736 - 15464598
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||||||||||||| |||||||||||||| |||||| ||  |||||||  ||||  || ||||||||||||||||||    
T  15464736 aaaagcttccttttgtgtcttctcttttagggttcattattgtgagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgca 15464638  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  15464637 agctatt-tttcttgtaactctttgtaacactttcatcata 15464598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 1457067 - 1457184
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  1457067 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 1457165  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  1457166 gtaacactttc-tcatattg 1457184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 36932243 - 36932381
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttca-tattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||||| ||||||||| |||||||||||| ||||| |||||| ||||||||| ||  |||||||  || |  || ||||| ||||| ||||||    
T  36932243 aaaagcttcctcttgtgtcttctgttttagggttcattattgagagagt-gggaaacacaaatgggtagaaattaagtcttgttcttatgtaaacttgca 36932341  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  36932342 agctatt-tttcttgtaactctttgtaacactttcatcata 36932381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 27445150 - 27445033
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  27445150 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 27445052  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  27445051 gtaacactttc-tcatattg 27445033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 27449994 - 27449877
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  27449994 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 27449896  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  27449895 gtaacactttc-tcatattg 27449877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 43592459 - 43592342
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  43592459 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43592361  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  43592360 gtaacactttc-tcatattg 43592342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 43598904 - 43598787
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  43598904 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43598806  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  43598805 gtaacactttc-tcatattg 43598787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 43604396 - 43604279
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  43604396 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43604298  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  43604297 gtaacactttc-tcatattg 43604279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 43609888 - 43609771
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||| | ||||  | ||||||||||| |||    
T  43609888 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43609790  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  43609789 gtaacactttc-tcatattg 43609771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 14520432 - 14520296
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcata-ttgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| |||||||||| ||| ||||||||| || ||| ||  |||||||  ||||  || ||||||||||||||||||    
T  14520432 aaaagcttccttttgtgtcttctcttt-agggttcataattgagagagtgggtaa-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttgca 14520335  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  14520334 agctatt--ttcttgtaactctttgtaacactttcatcata 14520296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 15044865 - 15044749
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||| ||||| ||||||| ||||||  |  |||||||||| |||    
T  15044865 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaagcta--gagtcttgtaacctttt 15044768  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  15044767 gtaacactttc-tcatattg 15044749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 9353227 - 9353363
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| ||| ||||| |||| ||||||||| |||||| ||  |||||||  |||   || ||||||||||||||||||    
T  9353227 aaaagcttccttttgtgtcttctctttaagg-ttcattattgagagagtggg-aaacacaaatgggtagaaattagatcttgttcttgtgtaagcttgca 9353324  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||| ||  |||||||||| |||||||||||||||||||||    
T  9353325 agctttt--ttcttgtaactctttgtaacactttcatcata 9353363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 28807485 - 28807585
Alignment:
Q  30 gggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaaccctttgtaac 128  Q
    ||||||||| |||||||||||| ||| |||||| ||||| ||||||||||| ||| ||||| ||||||| ||||||  | ||||||||||| ||||||||    
T  28807485 gggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaac 28807581  T
Q  129 actt 132  Q
    ||||    
T  28807582 actt 28807585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 12084096 - 12084206
Alignment:
Q  27 ttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgta 126  Q
    ||||| |||||||||||||||||||  | ||| ||  |||||||  ||||  || |||||||||||||||  ||| || |  |||||||||| |||||||    
T  12084096 ttaggattcatattgtgagagtgggtga-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttttaagttaat--ttcttgtaactctttgta 12084192  T
Q  127 acactttcatcata 140  Q
    ||||||||||||||    
T  12084193 acactttcatcata 12084206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 10281874 - 10281817
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaacccttt-gtaacactttcatcata 140  Q
    |||||||||||||||| |||||| |  |||||||||| |||| |||||||||||||||||    
T  10281874 ttcttgtgtaagcttgtaagctaat--ttcttgtaactcttttgtaacactttcatcata 10281817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 11916946 - 11916999
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaac-cctttgtaacactttcat 136  Q
    ||||||||||||||||||| ||||  ||||||||||| | ||||||||||||||||    
T  11916946 ttcttgtgtaagcttgcaaactat--tttcttgtaactcttttgtaacactttcat 11916999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 24135886 - 24135850
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  24135886 agattaggccatattggctgaactgggtcaacaatct 24135850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 31180252 - 31180216
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  31180252 agattaggccatattggctgaactgggtcaacaatct 31180216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 38192211 - 38192175
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  38192211 agattaggccatattggctgaactgggtcaacaatct 38192175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 38219436 - 38219400
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  38219436 agattaggccatattggctgaactgggtcaacaatct 38219400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 43592317 - 43592281
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  43592317 agattaggccatattggctgaactgggtcaacaatct 43592281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 24202663 - 24202800
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  || ||||||||||||||||||||    
T  24202663 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaag 24202762  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  24202763 ctatt-tttcttgtaaccctttgtaacactttcatcata 24202800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 24787257 - 24787398
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa-gcttgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||||| ||||| |     
T  24787257 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagttgggaaacaccaaagggtagaatctaggatttgttcttgtgtaatgcttgaag 24787356  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcatcatattg 143  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  24787357 gctattgtttcttgtaaccctttgtaacactttc-tcatattg 24787398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 19358737 - 19358874
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||  || ||||||||||||||||||||    
T  19358737 aaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaag 19358836  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  19358837 ctatt-tttcttgtaaccctttgtaacactttcatcata 19358874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 19361326 - 19361463
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||  || |||||||||||||||||||     
T  19361326 aaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaaa 19361425  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  19361426 ctatt-tttcttgtaaccctttgtaacactttcatcata 19361463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 19379966 - 19380103
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||  || |||||||||||||||||||     
T  19379966 aaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaaa 19380065  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  19380066 ctatt-tttcttgtaaccctttgtaacactttcatcata 19380103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 19366202 - 19366300
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||  || |||||||||||||||||||    
T  19366202 aaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaa 19366300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 3281909 - 3281775
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||  ||||||||| |||| ||||||||| |||||| ||  |||||||  ||||  || ||||||||||||||||||    
T  3281909 aaaagcttccttttgtgtcttctctt--agggttcatcattgagagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgca 3281813  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcat 139  Q
    |||||||  |||||||||| ||||||||||||||||||||    
T  3281812 agctatt--ttcttgtaactctttgtaacactttcatcat 3281775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 13604517 - 13604654
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| ||||||||| |||| ||||||||| |||||| ||  |||||||  ||||  || |||||||||||| |||||    
T  13604517 aaaagcttccttttgtgtcttctcttt-agggttcattattgagagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagtttgca 13604614  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||| ||||||||||| |||||||||| ||||||||||    
T  13604615 agctatt-tttcttgtaactctttgtaacattttcatcata 13604654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 26644793 - 26644928
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||  ||||||||| |||| ||||||| | |||||| ||  |||||||  ||||  || ||||||||||||||||||    
T  26644793 aaaagcttccttttgtgtcttctctt--agggttcatcattgagagagtgag-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgca 26644889  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  26644890 agctatt--ttcttgtaactctttgtaacactttcatcata 26644928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 41390760 - 41390644
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa-gcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||| ||||||| ||||| | ||||  ||  ||||||||| |||    
T  41390760 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagt--cttgtaacctttt 41390663  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  41390662 gtaacactttc-tcatattg 41390644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 41398415 - 41398299
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa-gcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||| ||||||| ||||| | ||||  ||  ||||||||| |||    
T  41398415 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagt--cttgtaacctttt 41398318  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  41398317 gtaacactttc-tcatattg 41398299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 21536466 - 21536596
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaa 100  Q
    |||||||||| | ||||||||||||  ||||||||| |||| ||||||||| || ||| ||  |||||||  || |  || |||||||||||||||||||    
T  21536466 aaagcttccttttgtgtcttctctt--agggttcatcattgagagagtgggtaa-cacaaacgggtagaaattaagtattgttcttgtgtaagcttgcaa 21536562  T
Q  101 gctattgtttcttgtaaccctttgtaacactttcat 136  Q
    |||||  ||||||||||| |||||||||||||||||    
T  21536563 gctat--tttcttgtaactctttgtaacactttcat 21536596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 32889562 - 32889508
Alignment:
Q  82 ttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatc 137  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  32889562 ttcttgtgtaagcttgcaagctatt-tttcttgtaactcattgtaacactttcatc 32889508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 25444996 - 25445111
Alignment:
Q  26 tttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttg-caagctattgtttcttgtaacccttt 123  Q
    ||||||||||||| |||||||||||| ||| |||||| |||||  |||||||||| ||| ||||| |||||||  ||||||  |  |||||||||| |||    
T  25444996 tttagggttcatagtgtgagagtgggaaaataccaaagggtag-ctctagggtttgttcatgtgtaaagcttgataagcta--gagtcttgtaacctttt 25445092  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  25445093 gtaacactttc-tcatattg 25445111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 37069969 - 37069836
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| | ||||||| |||| | ||||||| || ||| ||  |||||||  ||||  || ||||||||||||||||||    
T  37069969 aaaagcttccttttgtgtcttctcttt-atggttcattattgagtgagtgggtaa-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttgca 37069872  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    | |||||     ||||||| |||||||||||||||||||||    
T  37069871 aactatt-----ttgtaactctttgtaacactttcatcata 37069836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 25439803 - 25439868
Alignment:
Q  26 tttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa 92  Q
    ||||||||||||| |||||||||||| ||| |||||| |||||  |||||||||| ||| |||||||    
T  25439803 tttagggttcatagtgtgagagtgggaaaataccaaagggtag-ctctagggtttgttcatgtgtaa 25439868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 44023785 - 44023886
Alignment:
Q  30 gggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttg-caagctattgtttcttgtaaccctttgtaa 127  Q
    ||||||||| |||||||||||| ||| |||||| |||||  |||||||||| ||| ||||| ||||||| |||||||  |  |||||||||| |||||||    
T  44023785 gggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaaagcttgacaagcta--gagtcttgtaaccttttgtaa 44023881  T
Q  128 cactt 132  Q
    |||||    
T  44023882 cactt 44023886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 1055058 - 1055094
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  1055058 agattaggccatattggctgaactgggtcaacaatct 1055094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 24202828 - 24202864
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  24202828 agattaggccatattggctgaactgggtcaacaatct 24202864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 24787423 - 24787459
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  24787423 agattaggccatattggctgaactgggtcaacaatct 24787459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 25445136 - 25445172
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  25445136 agattaggccatattggctgaactgggtcaacaatct 25445172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 39445538 - 39445502
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  39445538 agattaggccatattggctgaactgggtcaacaatct 39445502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 44023920 - 44023956
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  44023920 agattaggccatattggctgaactgggtcaacaatct 44023956  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 47703855 - 47703967
Alignment:
Q  27 ttagggttcatattgtgagagtggggaaacaccaaatgg-tagaatctagggttttttcttgtgtaagcttgcaagctattgtttcttgtaacccttt-g 124  Q
    ||||| |||||||||||||||||||  | ||| |||||| |||||  ||||  || |||||||||||||||| |||||| |  |||||||||  |||| |    
T  47703855 ttaggattcatattgtgagagtgggtga-cacaaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaat--ttcttgtaattcttttg 47703951  T
Q  125 taacactttcatcata 140  Q
    ||||||||||||||||    
T  47703952 taacactttcatcata 47703967  T

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Target: scaffold0188 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 17846 - 17983
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||| |  || ||||||||||||||||||||    
T  17846 aaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactatgacttgttcttgtgtaagcttgcaag 17945  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  17946 ctatt-tttcttgtaaccctttgtaacactttcatcata 17983  T

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Target: scaffold0188; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 23939 - 24076
Alignment:
Q  2 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgcaag 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||| |  || ||||||||||||||||||||    
T  23939 aaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactatgacttgttcttgtgtaagcttgcaag 24038  T
Q  102 ctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  24039 ctatt-tttcttgtaaccctttgtaacactttcatcata 24076  T

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Target: scaffold0188; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 18011 - 18047
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18011 agattaggccatattggctgaactgggtcaacaatct 18047  T

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Target: scaffold0188; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 24104 - 24140
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  24104 agattaggccatattggctgaactgggtcaacaatct 24140  T

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Target: scaffold0140 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 8312 - 8450
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttca-tattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | |||||||||||||||||||||| ||||| |||||| ||||||||| ||   ||||||  ||||  || ||||||||||||||||||    
T  8312 aaaagcttccttttgtgtcttctcttttagggttcattattgagagagt-gggaaacacaaatacgtagaaattaggtcttgttcttgtgtaagcttgca 8410  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  8411 agctatt-tttcttgtaactctttgtaacactttcatcata 8450  T

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Target: scaffold0006 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 133174 - 133311
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| ||||||||| |||| ||||||||| |||||| ||  |||||||  ||||  || |||||||||||| |||||    
T  133174 aaaagcttccttttgtgtcttctcttt-agggttcattattgagagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagtttgca 133271  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    ||||||| ||||||||||| |||||||||| ||||||||||    
T  133272 agctatt-tttcttgtaactctttgtaacattttcatcata 133311  T

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Target: scaffold0135 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 34967 - 35084
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||| ||||| ||||||| | ||||  | ||||| ||||| |||    
T  34967 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaacctttt 35065  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  35066 gtaacactttc-tcatattg 35084  T

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Target: scaffold0087 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 36727 - 36863
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| ||||||||| |||| ||||||||| |||||| ||  |||||||   | |  || ||||||||||||||||||    
T  36727 aaaagcttccttttgtgtcttctcttt-agggttcattattgagagagtggg-aaacacaaatgggtagaaatcatgtcttgttcttgtgtaagcttgca 36824  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  36825 agctatt--ttcttgtaactctttgtaacactttcatcata 36863  T

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Target: scaffold0087; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 43856 - 43992
Alignment:
Q  1 aaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaagcttgca 99  Q
    ||||||||||| | ||||||||||||| ||||||||| |||| ||||| | |||| ||| ||  |||||||  ||||  || ||||||| ||||||||||    
T  43856 aaaagcttccttttgtgtcttctcttt-agggttcattattgagagagagtggaa-cacaaatgggtagaaattaggtcttgttcttgtataagcttgca 43953  T
Q  100 agctattgtttcttgtaaccctttgtaacactttcatcata 140  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  43954 agctatt--ttcttgtaactctttgtaacactttcatcata 43992  T

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Target: scaffold0355 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 9549 - 9664
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa-gcttgcaagctattgtttcttgtaacccttt 123  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||| |||||||||| ||| ||||||| ||||| | ||||  ||  ||||||||| |||    
T  9549 ttttagggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaggctagagt--cttgtaacctttt 9645  T
Q  124 gtaacactttcatcatattg 143  Q
    ||||||||||| ||||||||    
T  9646 gtaacactttc-tcatattg 9664  T

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Target: scaffold0355; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 3754 - 3820
Alignment:
Q  25 ttttagggttcatattgtgagagtggggaaacaccaaatggtagaatctagggttttttcttgtgtaa 92  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||| ||||||||||| ||| |||||||    
T  3754 ttttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 3820  T

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Target: scaffold0355; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 9689 - 9725
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  9689 agattaggccatattggctgaactgggtcaacaatct 9725  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 85804 - 85750
Alignment:
Q  83 tcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcat 139  Q
    ||||||||||||||  |||||| |  |||||||||| ||||||||||||||||||||    
T  85804 tcttgtgtaagcttttaagctaat--ttcttgtaactctttgtaacactttcatcat 85750  T

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Target: scaffold0464 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 401 - 365
Alignment:
Q  174 agattatgtcatattggctgaactgggtcaacaatct 210  Q
    |||||| | ||||||||||||||||||||||||||||    
T  401 agattaggccatattggctgaactgggtcaacaatct 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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