View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_77 (Length: 218)
Name: NF9369_low_77
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_77 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 22071918 - 22072105
Alignment:
| Q |
16 |
catccaacattttgcacaatcgtacaataatgtcttcagatatatttttggtgttcctgttgaaaaaagcaaatgatcctttgtatggttagaaatgcaa |
115 |
Q |
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| T |
22071918 |
catccaacattttgcacaatcgtacaacaatgtcttcagatatatttttggtattcctgttgaaaaaagcaaatgatcctttgtatggttagaaatgcaa |
22072017 |
T |
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| Q |
116 |
tgatctacaggtttatgaattgtatttattcaataactaataataagtttgattctatattaatgataaatatatacccgaatccttt |
203 |
Q |
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| T |
22072018 |
tgatctagaggtttatgatttgtatttattcaatatgtaataataagtttgattctatattaattataaatatatactcgaatccttt |
22072105 |
T |
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Target: scaffold0028 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 118005 - 118053
Alignment:
| Q |
23 |
cattttgcacaatcgtacaataatgtcttcagatatatttttggtgttc |
71 |
Q |
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| T |
118005 |
cattttgcacaattgtacaacaatgtcttgagaaatatttttggtgttc |
118053 |
T |
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