View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9369_low_78 (Length: 216)
Name: NF9369_low_78
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_78 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 41906671 - 41906493
Alignment:
| Q |
22 |
tataaatctgaaatattttcgttcatacacttaccacaaggtcatatcttttgttcatattccatcagccaagataaaggacacaaactatctttcagtc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41906671 |
tataaatctgaaatattttcgttcatacacttaccacaaggtcatatcttttgttcatattccatcagccaagataaaggacacaaactatctttcagtc |
41906572 |
T |
|
| Q |
122 |
aggtttggcttctattttgatgtctcttttcaataaccatgtttgtgttaagttacatattacttactttctgcgcctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41906571 |
aggtttggcttctattttgatgtctcttttcaataaccatgtttgtgttaagttacatattacttactttctgcgcctt |
41906493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University