View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9369_low_82 (Length: 212)
Name: NF9369_low_82
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9369_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 10396615 - 10396436
Alignment:
| Q |
14 |
caaaggtgagagggtggaagtactatcgcaggaagtgcatggttagctaagttaattacttgaacagttataaaaagaggtctcaatatcgattgaaaat |
113 |
Q |
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| T |
10396615 |
caaaggtgagagggtggaagtaccatcgcaggaagtgcatggttagctaagttaattacttgaacagttataaaaagaggtctcaatatcgattgaaaat |
10396516 |
T |
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| Q |
114 |
ataaaaggaggatatgaagatgaaaatacaaggtagaaataaagagaaacatgtttaataaggtccatcaagtgaagatac |
194 |
Q |
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| T |
10396515 |
ataaaaggaggatatgaagatgaaaatacaacgtagaaataaagagaaacatg-tcaatagggtccatcaagtgaagatac |
10396436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 31713416 - 31713480
Alignment:
| Q |
105 |
attgaaaatataaaaggaggatatgaagatgaaaatacaaggtagaaataaagagaaacatgttt |
169 |
Q |
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| T |
31713416 |
attgaaaattgaaacggaggatatgaagctgaaaatacaacacataaataaagagaaacgtgttt |
31713480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 8913512 - 8913409
Alignment:
| Q |
91 |
aggtctcaatatcgattgaaaatataaaaggaggatatgaagatgaaaatacaaggtagaaataaagagaaacatgtttaataaggtccatcaagtgaag |
190 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||| |||| | |||||| ||||||||||||| ||| |||||| ||||||||| |
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| T |
8913512 |
aggtctcaatatcgactgaaaatataaaaggaggatatgaagataaaaacacaacattgaaatagagagaaacatgttcgatagggtccaccaagtgaag |
8913413 |
T |
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| Q |
191 |
atac |
194 |
Q |
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|||| |
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| T |
8913412 |
atac |
8913409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 8913733 - 8913661
Alignment:
| Q |
14 |
caaaggtgagagggtggaag---tactatcgcaggaagtgcatggttagctaagttaattacttgaacagtta |
83 |
Q |
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|||||||||||||||| ||| ||| || ||||||||||||||| ||||||| ||| |||||||||| |||| |
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| T |
8913733 |
caaaggtgagagggtgaaagatgtaccattgcaggaagtgcatggctagctaacttatttacttgaactgtta |
8913661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 48069223 - 48069146
Alignment:
| Q |
86 |
aaaagaggtctcaatatcgattgaaaatataaaaggaggatatgaagatgaaaatacaaggtagaaataaagagaaac |
163 |
Q |
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| T |
48069223 |
aaaagaggtctcaataacgattgaaaatataaaaggatgatatgaagatgaaaacccaatatagaaatagagagaaac |
48069146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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