View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9369_low_85 (Length: 206)

Name: NF9369_low_85
Description: NF9369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9369_low_85
NF9369_low_85
[»] chr4 (25 HSPs)
chr4 (34-206)||(869641-869813)
chr4 (34-206)||(5714993-5715165)
chr4 (34-205)||(18270093-18270264)
chr4 (34-206)||(4425630-4425802)
chr4 (34-202)||(5708357-5708525)
chr4 (34-206)||(18263232-18263404)
chr4 (34-206)||(19919521-19919693)
chr4 (34-206)||(19925750-19925922)
chr4 (34-206)||(8859212-8859384)
chr4 (34-199)||(26964591-26964756)
chr4 (34-199)||(26971485-26971650)
chr4 (34-206)||(28392157-28392329)
chr4 (38-206)||(10620323-10620491)
chr4 (38-206)||(10627405-10627573)
chr4 (34-206)||(55613729-55613900)
chr4 (34-194)||(47387957-47388117)
chr4 (63-194)||(35224601-35224732)
chr4 (88-194)||(10676591-10676697)
chr4 (88-194)||(10890231-10890337)
chr4 (34-93)||(8846223-8846282)
chr4 (145-206)||(20579427-20579488)
chr4 (34-83)||(5667206-5667255)
chr4 (157-206)||(10825342-10825391)
chr4 (88-143)||(10690368-10690423)
chr4 (88-143)||(10904008-10904063)
[»] scaffold0234 (2 HSPs)
scaffold0234 (34-206)||(1334-1506)
scaffold0234 (34-206)||(10227-10399)
[»] scaffold0061 (1 HSPs)
scaffold0061 (34-206)||(5211-5383)
[»] chr6 (14 HSPs)
chr6 (34-206)||(27297679-27297851)
chr6 (34-206)||(17690455-17690627)
chr6 (34-206)||(27380242-27380414)
chr6 (34-206)||(27470625-27470797)
chr6 (34-206)||(29309910-29310082)
chr6 (34-206)||(29316869-29317041)
chr6 (34-206)||(17683472-17683644)
chr6 (54-206)||(27278407-27278559)
chr6 (54-206)||(27303298-27303450)
chr6 (37-206)||(11652721-11652890)
chr6 (38-199)||(18336613-18336774)
chr6 (89-194)||(28755282-28755386)
chr6 (34-93)||(25536292-25536351)
chr6 (63-138)||(16393546-16393621)
[»] scaffold0433 (1 HSPs)
scaffold0433 (34-206)||(8128-8300)
[»] chr3 (25 HSPs)
chr3 (34-206)||(6111120-6111292)
chr3 (37-206)||(13517832-13518001)
chr3 (34-206)||(15599899-15600071)
chr3 (34-206)||(10571581-10571753)
chr3 (34-206)||(10578347-10578519)
chr3 (34-206)||(15341234-15341406)
chr3 (34-206)||(15356601-15356773)
chr3 (34-206)||(15606444-15606616)
chr3 (34-206)||(18538015-18538187)
chr3 (45-206)||(13212331-13212492)
chr3 (34-206)||(17196763-17196935)
chr3 (34-206)||(1646511-1646683)
chr3 (58-206)||(8491428-8491576)
chr3 (34-206)||(16481473-16481644)
chr3 (34-206)||(32056060-32056232)
chr3 (34-199)||(16201240-16201404)
chr3 (58-202)||(23014362-23014505)
chr3 (130-206)||(13258661-13258737)
chr3 (34-140)||(17137399-17137505)
chr3 (138-206)||(17780178-17780246)
chr3 (138-206)||(19081479-19081547)
chr3 (34-95)||(17780244-17780305)
chr3 (34-95)||(19081545-19081606)
chr3 (63-194)||(25801243-25801373)
chr3 (125-188)||(54333201-54333264)
[»] chr1 (10 HSPs)
chr1 (34-206)||(18253050-18253222)
chr1 (34-206)||(18531528-18531700)
chr1 (34-206)||(27309568-27309740)
chr1 (34-206)||(9075892-9076064)
chr1 (34-163)||(27130442-27130571)
chr1 (34-206)||(16358048-16358222)
chr1 (130-206)||(21169424-21169500)
chr1 (58-194)||(22640878-22641014)
chr1 (34-71)||(36815747-36815784)
chr1 (34-67)||(27276691-27276724)
[»] scaffold0220 (1 HSPs)
scaffold0220 (34-206)||(19333-19505)
[»] chr8 (9 HSPs)
chr8 (34-206)||(22172505-22172677)
chr8 (34-206)||(6095166-6095338)
chr8 (34-206)||(21941687-21941859)
chr8 (34-206)||(15327243-15327415)
chr8 (34-206)||(15507612-15507784)
chr8 (34-169)||(28549067-28549203)
chr8 (58-199)||(24643993-24644133)
chr8 (34-169)||(29230434-29230568)
chr8 (34-169)||(24796039-24796169)
[»] scaffold0390 (2 HSPs)
scaffold0390 (34-206)||(5924-6096)
scaffold0390 (34-206)||(12940-13112)
[»] chr7 (12 HSPs)
chr7 (34-206)||(12739562-12739734)
chr7 (34-206)||(12751879-12752051)
chr7 (34-206)||(29328808-29328980)
chr7 (34-206)||(2653003-2653175)
chr7 (34-206)||(11535077-11535249)
chr7 (34-206)||(11541995-11542167)
chr7 (37-199)||(15153491-15153653)
chr7 (37-206)||(18562056-18562225)
chr7 (34-206)||(9978848-9979020)
chr7 (34-101)||(11557193-11557260)
chr7 (34-69)||(13393182-13393217)
chr7 (142-196)||(18256843-18256897)
[»] chr5 (7 HSPs)
chr5 (34-206)||(24694475-24694647)
chr5 (34-177)||(24701268-24701411)
chr5 (34-206)||(19713515-19713687)
chr5 (34-199)||(18565478-18565647)
chr5 (34-163)||(19706230-19706359)
chr5 (63-169)||(938602-938710)
chr5 (138-194)||(39539653-39539709)
[»] scaffold1199 (1 HSPs)
scaffold1199 (34-206)||(145-317)
[»] chr2 (5 HSPs)
chr2 (34-206)||(22790848-22791020)
chr2 (35-194)||(41664787-41664945)
chr2 (34-166)||(18620856-18620988)
chr2 (89-194)||(27353433-27353538)
chr2 (34-83)||(21329380-21329429)
[»] scaffold0063 (1 HSPs)
scaffold0063 (34-206)||(6548-6720)
[»] scaffold0213 (1 HSPs)
scaffold0213 (87-206)||(4313-4432)
[»] scaffold0008 (1 HSPs)
scaffold0008 (34-201)||(229407-229574)
[»] scaffold1303 (1 HSPs)
scaffold1303 (58-206)||(996-1143)
[»] scaffold0203 (1 HSPs)
scaffold0203 (103-206)||(29199-29302)
[»] scaffold0026 (1 HSPs)
scaffold0026 (77-199)||(26276-26398)
[»] scaffold0032 (1 HSPs)
scaffold0032 (41-188)||(107280-107427)
[»] scaffold0502 (1 HSPs)
scaffold0502 (38-199)||(70-231)
[»] scaffold0657 (1 HSPs)
scaffold0657 (167-206)||(3870-3909)
[»] scaffold0039 (1 HSPs)
scaffold0039 (131-188)||(87829-87885)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 869641 - 869813
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  869641 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctgaatctccgttggaattggctagcaccggtcatcggag 869740  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  869741 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 869813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 5714993 - 5715165
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||    
T  5714993 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacgtagttctctctgaatctccgttggaattggctagcactggtcatcggag 5715092  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5715093 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 5715165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 18270093 - 18270264
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  18270093 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggag 18270192  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18270193 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttcta 18270264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 4425802 - 4425630
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  4425802 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctttgaatctccgttggaattggctagcaccggtcatcggag 4425703  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4425702 aagttctgttcgtgtggactaagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 4425630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 5708357 - 5708525
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  5708357 cttaacctaattcacaaaagttgtgaaaccctagccgctgctctctaaacgtagttctctctgaatctccgttggaattggctagcaccggtcatcggag 5708456  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttctt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5708457 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttctt 5708525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 18263232 - 18263404
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||||     
T  18263232 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggat 18263331  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18263332 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 18263404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 19919693 - 19919521
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||||||||||  |||||||||||||||||||||||||    
T  19919693 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctgaatctccgttgaaattggctagcaccggtcatcggag 19919594  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19919593 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 19919521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 19925922 - 19925750
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||| ||||||||||||||||||||||||||    
T  19925922 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggag 19925823  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  19925822 aagttctgttcgtgtggactgagtagaggcattgctgctttgctttgctcgtgatcagaaatatttcttctac 19925750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 8859212 - 8859384
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  8859212 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 8859311  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  8859312 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 8859384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 26964591 - 26964756
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  26964591 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 26964690  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatattt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26964691 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagattt 26964756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 26971485 - 26971650
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  26971485 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 26971584  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatattt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26971585 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagattt 26971650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 28392329 - 28392157
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||| |  |||||||| |||||||||| ||||||||||||||| ||||||||||    
T  28392329 cttaacctaattcacaaaagttgtgaaaccctagctgccgctctttaaaccttcttctctctgaatctccgttggaattggctagcaccagtcatcggag 28392230  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28392229 aagtactgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 28392157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 10620491 - 10620323
Alignment:
Q  38 acctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagt 137  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  10620491 acctaattcacaaaagttgtgaaaccctagccgtcgctctctaaaccttgttctctctgaatctctgttggaattggctagcaccggtcatcggagaagt 10620392  T
Q  138 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  10620391 tctgttcgtgtggactgaatagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 10620323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 10627573 - 10627405
Alignment:
Q  38 acctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagt 137  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  10627573 acctaattcacaaaagttgtgaaaccctagccgtcgctctctaaaccttgttctctctgaatctccattggaattggctagcaccggtcatcggagaagt 10627474  T
Q  138 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  10627473 tctgttcgtgtggactgaatagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 10627405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 55613729 - 55613900
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||| ||||||||||    
T  55613729 cttaacctaattcacaaaagttgtgaaactc-agccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccagtcatcggag 55613827  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  55613828 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 55613900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 47388117 - 47387957
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||||||| |  ||||| || |||||||||| ||||||||||||||||||||||||||    
T  47388117 cttaacctaattcacaaaaggcgtgaaaccctagccgccactctctaaacctttttctcactgaatctccgttggaattggctagcaccggtcatcggag 47388018  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaa 194  Q
    |||||||||||||||||||| |||||||||||||||   |||||||||||||||| |||||    
T  47388017 aagttctgttcgtgtggactaagtagaggcatcgctatgttgctttgctcgtgatcagaaa 47387957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 35224601 - 35224732
Alignment:
Q  63 cctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 162  Q
    |||||||||| ||||||||||    |||| ||| ||| |||||| |||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  35224601 cctagccgcctctctctaaaccctattctttctgaatatccgttggaattgactagcacgggtcatcgaagaagctctgttcgtgtggactgagtagagg 35224700  T
Q  163 catcgctgctttgctttgctcgtgattagaaa 194  Q
    ||||| |   |||||||||||||||| |||||    
T  35224701 catcgatatcttgctttgctcgtgatcagaaa 35224732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 10676697 - 10676591
Alignment:
Q  88 ttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 187  Q
    |||||||| |||||| ||| | ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | || ||||||||||||    
T  10676697 ttctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgttactttgctcgtga 10676598  T
Q  188 ttagaaa 194  Q
    | |||||    
T  10676597 tcagaaa 10676591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 10890337 - 10890231
Alignment:
Q  88 ttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 187  Q
    |||||||| |||||| ||| | ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | || ||||||||||||    
T  10890337 ttctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgttactttgctcgtga 10890238  T
Q  188 ttagaaa 194  Q
    | |||||    
T  10890237 tcagaaa 10890231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 8846223 - 8846282
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctct 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  8846223 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctct 8846282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 20579488 - 20579427
Alignment:
Q  145 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  20579488 gtgtggactgaatagaggcatcgctgctttgctttgctcgtgatcagaattatttcttctac 20579427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 5667255 - 5667206
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaac 83  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5667255 cttaaccttattcacaaaagttgtgaaaccctagccgccgctctctaaac 5667206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 10825391 - 10825342
Alignment:
Q  157 tagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  10825391 tagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 10825342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 10690368 - 10690423
Alignment:
Q  88 ttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgtt 143  Q
    |||||||| |||||| ||| | ||||||||||| ||||||||||||||||||||||    
T  10690368 ttctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10690423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 10904008 - 10904063
Alignment:
Q  88 ttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgtt 143  Q
    |||||||| |||||| ||| | ||||||||||| ||||||||||||||||||||||    
T  10904008 ttctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10904063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 1506 - 1334
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  1506 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggag 1407  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1406 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 1334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 10399 - 10227
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  10399 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggag 10300  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10299 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 10227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 5383 - 5211
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  5383 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggag 5284  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5283 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 5211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 27297679 - 27297851
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  27297679 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 27297778  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27297779 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 27297851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 17690627 - 17690455
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  17690627 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 17690528  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17690527 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 17690455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 27380414 - 27380242
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| |||    
T  27380414 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcagag 27380315  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27380314 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 27380242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 27470797 - 27470625
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| |||    
T  27470797 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcagag 27470698  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27470697 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 27470625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 29309910 - 29310082
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  29309910 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttatctctgaatctccgttggaattggctagcaccggtcatcggag 29310009  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  29310010 aagttctgttcgtgtggactgagtagaggcatagctgctttgctttgctcgtgatcagaaatatttcttctac 29310082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 29316869 - 29317041
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| ||||||||||||||||||||||||||    
T  29316869 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttatctctgaatctctgttggaattggctagcaccggtcatcggag 29316968  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  29316969 aagttctgttcgtgtggactgagtagaggcatagctgctttgctttgctcgtgatcagaaatatttcttctac 29317041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 17683644 - 17683472
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||||| |||    
T  17683644 cttaacttaattcacaaaagttgtgaaaccctagtcaccgctctctaaacattgttctctttgaatctccgttggaattggctagcaccggtcatcagag 17683545  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  17683544 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttctgctac 17683472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 27278407 - 27278559
Alignment:
Q  54 ttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggact 153  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27278407 ttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 27278506  T
Q  154 gagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27278507 gagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 27278559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 27303298 - 27303450
Alignment:
Q  54 ttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggact 153  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27303298 ttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 27303397  T
Q  154 gagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303398 gagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 27303450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 11652721 - 11652890
Alignment:
Q  37 aacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaag 136  Q
    |||||||||||||||||||||||||||||||  |||||||||||||| |  |||| ||| |||||||||| |||||||||||||||||||||| ||||||    
T  11652721 aacctaattcacaaaagttgtgaaaccctagatgccgctctctaaaccttcttctttctgaatctccgttggaattggctagcaccggtcatcagagaag 11652820  T
Q  137 ttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    | | ||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  11652821 tacagtttgtgtggactgagtagaggcatcgctgctttgctttactcgtgatcagaaatatttcttctac 11652890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 18336613 - 18336774
Alignment:
Q  38 acctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagt 137  Q
    |||||||||| |||||| |||||||  || | |||||||||||||| | |||||||||  |||||||||  | |||||||||||| |||||  |||||||    
T  18336613 acctaattcataaaagtggtgaaacaatatctgccgctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcattagagaagt 18336712  T
Q  138 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatattt 199  Q
    | |||||||||||||||||||||| |||||||   |||||||||| ||||| ||||| ||||    
T  18336713 tatgttcgtgtggactgagtagagacatcgctatgttgctttgcttgtgatcagaaacattt 18336774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 28755386 - 28755282
Alignment:
Q  89 tctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 188  Q
    |||||||||| || |||| |||||||||||||||| ||||  || ||||||| |||||||||||||||||||| ||| ||| ||||| ||||||||||||    
T  28755386 tctctctcaaccttcgttggaattggctagcaccgatcattaga-aagttctattcgtgtggactgagtagagacattgctactttgatttgctcgtgat 28755288  T
Q  189 tagaaa 194  Q
     |||||    
T  28755287 cagaaa 28755282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 25536351 - 25536292
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctct 93  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||    
T  25536351 cttaacctaattcacaaaagttgtgaaacccaagccgccgctctctaaaccttgttctct 25536292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 16393621 - 16393546
Alignment:
Q  63 cctagccgccgctctctaaacatagttctctctcaatctccgttag-aattggctagcaccggtcatcggagaagtt 138  Q
    |||||||||||||||||||||  |  ||||||| |||||||||| | |||||||||| || ||||||| ||||||||    
T  16393621 cctagccgccgctctctaaaccca-atctctctgaatctccgtttgaaattggctagtactggtcatcagagaagtt 16393546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 8128 - 8300
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  8128 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 8227  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8228 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 8300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 6111120 - 6111292
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  6111120 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 6111219  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6111220 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 6111292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 13517832 - 13518001
Alignment:
Q  37 aacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaag 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||||| ||||||    
T  13517832 aacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacattgttctctttgaatctccgttggaattggctagcaccggtcatcagagaag 13517931  T
Q  137 ttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13517932 ttatgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 13518001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 15600071 - 15599899
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  15600071 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 15599972  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  15599971 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 15599899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 10571753 - 10571581
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| |||||| |||||||||||||||||||    
T  10571753 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattgactagcaccggtcatcggag 10571654  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  10571653 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 10571581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 10578519 - 10578347
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  10578519 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 10578420  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||    
T  10578419 aagttctgttcgtgtggactgagtagaggcatcgctgctttgttttgctcgtgatcagaaaaatttctgctac 10578347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 15341406 - 15341234
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| |||||||||||||||| |||||||||    
T  15341406 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccgatcatcggag 15341307  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  15341306 aagttctgttcatgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatattttttctac 15341234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 15356773 - 15356601
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| |||||||||||||||| |||||||||    
T  15356773 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccgatcatcggag 15356674  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||    
T  15356673 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcatgatcagaaatattttttctac 15356601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 15606616 - 15606444
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||| ||    
T  15606616 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcgaag 15606517  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  15606516 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 15606444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 18538015 - 18538187
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||| |||||||||| ||||||||||||||||||||||||||    
T  18538015 cttaacctaattcacaaaagttgtgaaaccctagccgtcgctctctaaaccttggtctctctgaatctccgtttgaattggctagcaccggtcatcggag 18538114  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  18538115 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 18538187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 13212331 - 13212492
Alignment:
Q  45 tcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttc 144  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||    
T  13212331 tcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttttgttc 13212430  T
Q  145 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13212431 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 13212492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 17196935 - 17196763
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  17196935 cttaacttaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctttgaatctccgttggaattggctagcaccggtcatcggag 17196836  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||| |||||||||||||||||    
T  17196835 aagttctgttcgtgtggactgagtagaagcatcactgttttgctttactcgtgatcagaaatatttcttctac 17196763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 1646683 - 1646511
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||| ||||||||||||||||||||| || |||||||||||| | ||||||| | |||||||||||||||||||| ||||||||||||||||    
T  1646683 cttaacctaattaacaaaagttgtgaaaccctagtcgtcgctctctaaaccttgttctctttgaatctccgttagaattggcttgcaccggtcatcggag 1646584  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  1646583 aagttctgttcgtgtggactaagtagaggtatcgctactttgctttgctcgtgattagaaatatttattctac 1646511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 8491428 - 8491576
Alignment:
Q  58 gaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 157  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8491428 gaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagt 8491527  T
Q  158 agaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8491528 agaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 8491576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 16481644 - 16481473
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||| ||||||||||    
T  16481644 cttaacctaattcacaaaagttgtgaaactc-agccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccagtcatcggag 16481546  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  16481545 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 16481473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 32056232 - 32056060
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||| ||||||  ||||||||||||||||||||| |||    
T  32056232 cttaacctaattcacaaaagttgtgaagccctagccgccgctctctaaaccttgttctctctgaatttccgttgaaattggctagcaccggtcatcagag 32056133  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  32056132 aagttctgttcgtgtggaccgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 32056060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 16201240 - 16201404
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||| ||| || ||| ||||||||| |||| ||||||||||     
T  16201240 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaagctagt-cgctctaaatttctgttggaattggcttgcactggtcatcggat 16201338  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatattt 199  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||    
T  16201339 aagttctgttcgtgtggactgagtagaggcatcactgctttgcttttctcgtgatcagaaacattt 16201404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 58 - 202
Target Start/End: Complemental strand, 23014505 - 23014362
Alignment:
Q  58 gaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 157  Q
    |||||||||||||||||||||||||| |||| |||||| |||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  23014505 gaaaccctagccgccgctctctaaacctagt-ctctctgaatctctgttggaattggcttgcaccgatcatcggagaagttctgttcgtgtggactgagt 23014407  T
Q  158 agaggcatcgctgctttgctttgctcgtgattagaaatatttctt 202  Q
    |||| |||||| ||||||||||||||||||| | |||||||||||    
T  23014406 agagacatcgccgctttgctttgctcgtgatcataaatatttctt 23014362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 13258661 - 13258737
Alignment:
Q  130 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13258661 ggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 13258737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 17137399 - 17137505
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||| |||||||||||||||| ||||  ||| |||||||||| | ||||||| | |||||||||| ||||||||||||||| ||||||||||    
T  17137399 cttaacctaattaacaaaagttgtgaaacactagttgcctctctctaaactttgttctctttgaatctccgttggaattggctagcaccagtcatcggag 17137498  T
Q  134 aagttct 140  Q
    |||||||    
T  17137499 aagttct 17137505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 17780246 - 17780178
Alignment:
Q  138 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  17780246 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatatttcttctac 17780178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 19081547 - 19081479
Alignment:
Q  138 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  19081547 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatatttcttctac 19081479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 17780305 - 17780244
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  17780305 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctct 17780244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 19081606 - 19081545
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  19081606 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctct 19081545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 25801243 - 25801373
Alignment:
Q  63 cctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 162  Q
    ||||| ||| |||||||||||    |||||||| ||||||||||  ||||| ||||||||  ||| |||| ||||| ||||||||||||||| |||||||    
T  25801243 cctagtcgctgctctctaaaccctattctctctgaatctccgttgaaattgcctagcacca-tcaccggataagttatgttcgtgtggactgggtagagg 25801341  T
Q  163 catcgctgctttgctttgctcgtgattagaaa 194  Q
    | ||||| | ||||||||||||| || |||||    
T  25801342 cgtcgctacattgctttgctcgtaatcagaaa 25801373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 54333264 - 54333201
Alignment:
Q  125 tcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 188  Q
    ||||| |||||| ||||||||||| |||||||||||| ||||| | ||||| ||||||||||||    
T  54333264 tcatcagagaaggtctgttcgtgtagactgagtagagacatcgttactttgttttgctcgtgat 54333201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 18253050 - 18253222
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  18253050 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 18253149  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18253150 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 18253222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 18531700 - 18531528
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||| ||||||||||||||||||||||||||    
T  18531700 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggag 18531601  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18531600 aagttctgttcgtgtggactaagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 18531528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 27309740 - 27309568
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||  |||||||||||||||||||||||||    
T  27309740 cttaacctaattaacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctttgaatctccgttgaaattggctagcaccggtcatcggag 27309641  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    | ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  27309640 aggttcttttcgtgtggactgagtagaggcatcgctactttgctttgctcgtgatcagaaatatttcttctac 27309568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 9076064 - 9075892
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||| |||||||||||||||| |||| ||||    
T  9076064 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacctcgttctctttgaatctccgttggaattggctagcaccgatcataggag 9075965  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    | ||||||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  9075964 acgttctgttcatgtggaatgagtagaggcaacgctgctttgctttgctcgtgatcagaaataattcttctac 9075892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 27130571 - 27130442
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  27130571 cttaacctaattcacaaaagttgtgaaaccctagcctccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcttcggag 27130472  T
Q  134 aagttctgttcgtgtggactgagtagaggc 163  Q
    ||||||||||||||||||||||||||||||    
T  27130471 aagttctgttcgtgtggactgagtagaggc 27130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 16358222 - 16358048
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattgg-ctagcaccggtcatcgga 132  Q
    |||||||||||||||||||||||||||||| |||| | |||||||||||| | ||||||| | |||| ||||| ||||||| ||| |||||||| |||||    
T  16358222 cttaacctaattcacaaaagttgtgaaaccatagctgtcgctctctaaacgttgttctctttgaatccccgttggaattggtctatcaccggtcttcgga 16358123  T
Q  133 gaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgc-tcgtgattagaaatatttcttctac 206  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||| | |||||||||||||||    
T  16358122 gaagttctgttcttgtggactgagtagaggcatcgctgcttttcttttcttcgtgatcataaatatttcttctac 16358048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 21169500 - 21169424
Alignment:
Q  130 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  21169500 ggagaagttctgttcgtgtggactgagtagaggcatcgttgctttgctttgctcgtgatcagaaatatttcttctac 21169424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 22641014 - 22640878
Alignment:
Q  58 gaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 157  Q
    ||||||||||||||||||||| ||||    |||||||| |||||| ||| ||||||||||||||  |||||  |||||||||||  ||| ||||| ||||    
T  22641014 gaaaccctagccgccgctctcaaaaccccattctctctgaatctctgttggaattggctagcactagtcataagagaagttctgaacgtctggacagagt 22640915  T
Q  158 agaggcatcgctgctttgctttgctcgtgattagaaa 194  Q
    |||||||||||| | |||||||||||||||| |||||    
T  22640914 agaggcatcgctacgttgctttgctcgtgatcagaaa 22640878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 36815784 - 36815747
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgc 71  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36815784 cttaacctaattcacaaaagttgtgaaaccctagccgc 36815747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 27276724 - 27276691
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctag 67  Q
    ||||||||||||||||||||||||||||||||||    
T  27276724 cttaacctaattcacaaaagttgtgaaaccctag 27276691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 19333 - 19505
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  19333 cttaacctaattcacaaaagttgtgaaaccctagccgccactctctaaacgtagttctctctgaatctccgttgtaattggctagcaccggtcatcggag 19432  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19433 aagttctgttcatgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 19505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 22172505 - 22172677
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| |||||||||||||| |||||||||||    
T  22172505 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcactggtcatcggag 22172604  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22172605 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 22172677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 6095166 - 6095338
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||||| | || ||||||||||||||||||||||||||    
T  6095166 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctgaatcttcattggaattggctagcaccggtcatcggag 6095265  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  6095266 aagttttgttcgtgtggactgagtagaggcatcgctgttttgctttgctcgtgatcagaaatatttcttctac 6095338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 21941687 - 21941859
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||| |||||||| |||||||||||    
T  21941687 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattagctagcactggtcatcggag 21941786  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  21941787 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 21941859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 15327243 - 15327415
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  15327243 cttaacctaattcacaaaagttgtgaaaccctagctgccgctctctaaaacttgttctctttgaatctccgttggaattggctagcaccggtcatcggag 15327342  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    || || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15327343 aatttatgttcatgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 15327415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 15507612 - 15507784
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  15507612 cttaacctaattcacaaaagttgtgaaaccctagctgccgctctctaaaacttgttctctttgaatctccgttggaattggctagcaccggtcatcggag 15507711  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    || || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15507712 aatttatgttcatgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 15507784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 28549067 - 28549203
Alignment:
Q  34 cttaacctaattcacaaaa-gttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcgga 132  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||||| ||| |||||||||||||| ||||||||||    
T  28549067 cttaacctaattcacaaaaagttgtgaaaccctagccgccgctctctaaacctggttctctctgaatctctgttggaattggctagcactggtcatcgga 28549166  T
Q  133 gaagttctgttcgtgtggactgagtagaggcatcgct 169  Q
    |||||||||||||||||||||||||||||||||||||    
T  28549167 gaagttctgttcgtgtggactgagtagaggcatcgct 28549203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 58 - 199
Target Start/End: Original strand, 24643993 - 24644133
Alignment:
Q  58 gaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 157  Q
    ||||||| |||||| ||||||||||| |||| |||||| ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24643993 gaaaccccagccgctgctctctaaacctagt-ctctctgaatctccgttgtaattggctagcatcggtcatcggagaagttctgttcgtgtggactgagt 24644091  T
Q  158 agaggcatcgctgctttgctttgctcgtgattagaaatattt 199  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  24644092 agaggcatcgctgctctgctttgctcgtgatcagaaatattt 24644133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 29230434 - 29230568
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||| | ||||||||||||||||||||||||||||||  ||||| | ||||||||| |||||||||| ||||||||||| | | || ||| |||    
T  29230434 cttaacctaactaacaaaagttgtgaaaccctagccgccgctccttaaaccttgttctctcttaatctccgttggaattggctagta-ctgttatcagag 29230532  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgct 169  Q
    ||||||| |||||||||||| |||||||||||||||    
T  29230533 aagttcttttcgtgtggactaagtagaggcatcgct 29230568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 24796169 - 24796039
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||| ||| | ||  ||||| ||||||||||||| | |||| || ||| ||||| ||||  |||| ||||||||||||||||||||    
T  24796169 cttaacctaattcacaaa-gttataaa--cctagacgccgctctctaatcctagt-ctttctgaatcttcgttgaaattagctagcaccggtcatcggag 24796074  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgct 169  Q
    |||||||||||| ||||||| |||||||||||||||    
T  24796073 aagttctgttcg-gtggactcagtagaggcatcgct 24796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 6096 - 5924
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  6096 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 5997  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  5996 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 5924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 13112 - 12940
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  13112 cttaacctaattcacaacagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggag 13013  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  13012 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatgagaaagatttctgctac 12940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 12739562 - 12739734
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  12739562 cttaacctaattcacaaaagttgtgaaaccgtagccgccgctctctaaaccttgttctctcttaatctccgttggaattggctagcaccggtcatcggag 12739661  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12739662 aagttctgtttttgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 12739734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 12751879 - 12752051
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  12751879 cttaacctcatttacaaaagttgtgaaaccgtagccgccgctctctaaaccttgttctctctaaatctccgttggaattggctagcaccggtcatcggag 12751978  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12751979 aagttctgttcgtgtggacggagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 12752051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 29328808 - 29328980
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| |||||||||||||||||||||| |||    
T  29328808 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcagag 29328907  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29328908 aagttatgttcgtgtgaactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctac 29328980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 2653175 - 2653003
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||| ||| ||||||||||||||| ||||||||||    
T  2653175 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgattctctgttggaattggctagcaccagtcatcggag 2653076  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  2653075 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 2653003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 11535249 - 11535077
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| ||||| |||| |||||||||||||||| |||||||||    
T  11535249 cttaacctaattcacaaaagttgtgaaaccctagccaccgctctctaaaccttgttctctcttaatcttcgttggaattggctagcaccgatcatcggag 11535150  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||    
T  11535149 aagttctgttcgtgtggactgagtagagacatcgctgctttgctttgctcgtgatcagaaagatttctactac 11535077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 11542167 - 11541995
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||| |||| |||||||||||||||| ||| |||||    
T  11542167 cttaacctaattcacaaaagttgtgaaaccctagccgccgttctctaaaccttgttctctcttaatcttcgttggaattggctagcaccgatcaccggag 11542068  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||    
T  11542067 aagttctgttcgtgtggactgagtagaggtatcgctgctttgctttgctcgtgatcagaaagatttctactac 11541995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 15153491 - 15153653
Alignment:
Q  37 aacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacata-gttctctctcaatctccgttagaattggctagcaccggtcatcggagaa 135  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  15153491 aacctcattcacaaaagttgtgaaacc-tagccgccgctctctaaacatttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaa 15153589  T
Q  136 gttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatattt 199  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  15153590 gttttgttcgtgtggactgagtagaggcatcgcttctttgctttgctcgtgatcagaaatattt 15153653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 18562056 - 18562225
Alignment:
Q  37 aacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaag 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  18562056 aacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaag 18562155  T
Q  137 ttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    || ||||||||| |||| |||||||||||||||| ||||||||||||||||| | ||||| |||| ||||    
T  18562156 ttatgttcgtgtagactaagtagaggcatcgctgttttgctttgctcgtgatcaaaaataattctactac 18562225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 9978848 - 9979020
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |  |||||||| ||||| |||| ||||||||||||||||||||||| |     
T  9978848 cttaacctaattcgcaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctgaatcttcgttggaattggctagcaccggtcatcgaaa 9978947  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||||||||||| ||||||| |||| ||||    
T  9978948 aagttctgttcgtgtggactaagtagaggcatcgctattttgctttgctcgtgatcagaaatagttctactac 9979020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 11557260 - 11557193
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatct 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||    
T  11557260 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatct 11557193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 13393182 - 13393217
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagcc 69  Q
    |||||||||||| |||||||||||||||||||||||    
T  13393182 cttaacctaatttacaaaagttgtgaaaccctagcc 13393217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 18256897 - 18256843
Alignment:
Q  142 ttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaata 196  Q
    |||||||||||| |||| ||| |||||| | |||||||||||||||| |||||||    
T  18256897 ttcgtgtggactaagtataggtatcgctacgttgctttgctcgtgatcagaaata 18256843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 24694647 - 24694475
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  24694647 cttaacctaattcacaaaagttgtgaaaccctagccgccgttctctaaacctcgttctctctgaatctccgttggaattggctagcaccggtcatcggag 24694548  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  24694547 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctac 24694475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 24701411 - 24701268
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  24701411 cttaacctaattcacaaaagttgtgaaaccctagccgccgttctctaaacctcgttctctctgaatctccgttggaattggctagcaccggtcatcggag 24701312  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgct 177  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  24701311 aagttctattcgtgtggactgagtagaggcatcgctgctttgct 24701268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 19713687 - 19713515
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |  |||||||| |||||||||| ||||||||||||||| ||||||||||    
T  19713687 cttaacctaattcacaaaagttgtgaaaccctagctgccgctctctaaacctttttctctctgaatctccgttggaattggctagcaccagtcatcggag 19713588  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    ||||||||||| |||||||| ||||||||||||| || ||||||||||||||||| ||||||| |||| ||||    
T  19713587 aagttctgttcatgtggactaagtagaggcatcgttgttttgctttgctcgtgatcagaaataattctactac 19713515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 18565647 - 18565478
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggt--catcgg 131  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| | | |||||||||| ||||||||||||||||||  |||| |    
T  18565647 cttaacctaattcacaaaagttgtgaaaccctagccgccggtctctaaaccttgttctatttgaatctccgttggaattggctagcaccggtcacatcag 18565548  T
Q  132 agaagttctgttcgtgtggactgagtagaggca--tcgctgctttgctttgctcgtgattagaaatattt 199  Q
    ||||||| |||| ||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  18565547 agaagttttgtttgtgtggactgagtagaggcatctcgctgctttgctttgctcgtgatcagaaatattt 18565478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 19706359 - 19706230
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||| || |||  |||||||||||||||||||||||||    
T  19706359 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctaaatatctgttgaaattggctagcaccggtcatcggag 19706260  T
Q  134 aagttctgttcgtgtggactgagtagaggc 163  Q
    ||||| |||||||||||||| |||||||||    
T  19706259 aagttatgttcgtgtggactaagtagaggc 19706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 938710 - 938602
Alignment:
Q  63 cctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatc---ggagaagttctgttcgtgtggactgagtag 159  Q
    ||||||||||||||||||||| |  |||||||| |||||||||| |||| |||||||||||||||||   | |||||||||||||||||||| |||||||    
T  938710 cctagccgccgctctctaaaccttattctctct-aatctccgttggaatcggctagcaccggtcatcatcgtagaagttctgttcgtgtggattgagtag 938612  T
Q  160 aggcatcgct 169  Q
    | ||||||||    
T  938611 aagcatcgct 938602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 39539653 - 39539709
Alignment:
Q  138 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaa 194  Q
    |||||| ||||||||||||||||| ||||||| | |||||||||| ||||| |||||    
T  39539653 tctgtttgtgtggactgagtagagacatcgctacgttgctttgcttgtgatcagaaa 39539709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 145 - 317
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  145 cttaacctaattcacaaaagttgtgaaaccatagccgccgctatctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggag 244  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  245 aagttctgttcgtgtggactgagtagagacatcgctgctttgctttgcttgtgatcagaaatatttcttctac 317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 22791020 - 22790848
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| | |||||||||  ||||||||||||||||||||||||||    
T  22791020 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctatactttgttctctttgaatctccgtgggaattggctagcaccggtcatcggag 22790921  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  22790920 aagttctgttcgtgtggactgagtagaggcatcgcttctttgctttgctcgtcatcagaaatatttcttctac 22790848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 41664787 - 41664945
Alignment:
Q  35 ttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggaga 134  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||  |||||||||| |||||||||||||||| ||||||| ||    
T  41664787 ttaacctaattcacaaaagttgtgaaaccctagccgtcgttctctaaaccttgttctctccgaatctccgttggaattggctagcaccgatcatcgggga 41664886  T
Q  135 agttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaa 194  Q
    | ||||||||||||||||| |||||| |||||||| | ||||| |||||||||| |||||    
T  41664887 a-ttctgttcgtgtggactaagtagaagcatcgctacgttgctatgctcgtgatcagaaa 41664945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 18620856 - 18620988
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    |||||||||||||| | ||||||||||| |||||  ||| |||||||||| | ||||| ||| |||||| ||| ||||||||||||||| ||||||||||    
T  18620856 cttaacctaattcaaagaagttgtgaaatcctagttgccactctctaaactttgttctatctgaatctctgttggaattggctagcaccagtcatcggag 18620955  T
Q  134 aagttctgttcgtgtggactgagtagaggcatc 166  Q
    || ||||||||||||||||||||| ||| ||||    
T  18620956 aaattctgttcgtgtggactgagtggagacatc 18620988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 27353433 - 27353538
Alignment:
Q  89 tctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 188  Q
    ||||||| |||||||| | ||||||||| | |||||||||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||    
T  27353433 tctctctgaatctccgctggaattggctcgtaccggtcatcagagaagttctctacgtgtggactgagtagaggcatcgctacgttgctttgctcgtgat 27353532  T
Q  189 tagaaa 194  Q
     |||||    
T  27353533 cagaaa 27353538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 21329429 - 21329380
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaac 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21329429 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaac 21329380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 6548 - 6720
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| | ||||||| || ||||||||||||||| ||||||||||    
T  6548 cttaacctaattcacaaaagtggtgaaaccctagccgccgctctctaaaccttgttctctttgaatctccattggaattggctagcaccagtcatcggag 6647  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||| |||||||||||||||  |||||||||||||||||  |||||| |||| ||||    
T  6648 aagttctgttcgtgtggactaagtagaggcatcgctattttgctttgctcgtgatctgaaataattctactac 6720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 4313 - 4432
Alignment:
Q  87 gttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 186  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4313 gttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 4412  T
Q  187 attagaaatatttcttctac 206  Q
    || |||||||||||||||||    
T  4413 atcagaaatatttcttctac 4432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 229574 - 229407
Alignment:
Q  34 cttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggag 133  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| | ||||||| ||  || ||||||||||||||||||||||    
T  229574 cttaacctaattcacaaaagtggtgaaaccctagccgccgctctctaaaccttgttctctttgaatctccattgaaactggctagcaccggtcatcggag 229475  T
Q  134 aagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttct 201  Q
    ||||||||||| |||||||| |||| ||||||||||  ||||||||||||||||| ||||||| ||||    
T  229474 aagttctgttcatgtggactaagtataggcatcgctattttgctttgctcgtgatcagaaataattct 229407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 58 - 206
Target Start/End: Complemental strand, 1143 - 996
Alignment:
Q  58 gaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 157  Q
    |||||||||  || |||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1143 gaaaccctaatcgtcgctctctaaacttagt-ctctctgaatcaccgttggaattggctagcaccggtcatcggagaagttatgttcgtgtggactgagt 1045  T
Q  158 agaggcatcgctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  1044 agagacatcgctgctttgctttgctcgtgatcagaaatatttcttctac 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 29302 - 29199
Alignment:
Q  103 cgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatatttctt 202  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||     
T  29302 cgttggaattggctagcaccggccatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctg 29203  T
Q  203 ctac 206  Q
    ||||    
T  29202 ctac 29199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 77 - 199
Target Start/End: Original strand, 26276 - 26398
Alignment:
Q  77 tctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgc 176  Q
    ||||||| | ||||||||| |||||  ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26276 tctaaactttgttctctctgaatctttgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgc 26375  T
Q  177 tttgctcgtgattagaaatattt 199  Q
    ||||||| |||| ||||| ||||    
T  26376 tttgctcatgataagaaaaattt 26398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 107427 - 107280
Alignment:
Q  41 taattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagttct 140  Q
    |||||||||||||||||||||||||||||||| |||| ||||  | ||||||||| |||||||||| |||||||||  ||| ||||||||||||||||||    
T  107427 taattcacaaaagttgtgaaaccctagccgccactctttaaatcttgttctctctgaatctccgttggaattggctgacactggtcatcggagaagttct 107328  T
Q  141 gttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 188  Q
    |||||| ||||||  |||||||||| ||| | |||||||||| |||||    
T  107327 gttcgtttggactatgtagaggcattgctacgttgctttgcttgtgat 107280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 70 - 231
Alignment:
Q  38 acctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctcaatctccgttagaattggctagcaccggtcatcggagaagt 137  Q
    |||||||||| |||||| |||||||  || |||||||||||||||| | |||||||||  |||||||||  | |||||||||||| |||||  |||||||    
T  70 acctaattcataaaagtggtgaaacagtatccgccgctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcattagagaagt 169  T
Q  138 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgattagaaatattt 199  Q
    | ||||||| |||||||||||||| |||||||   ||  |||||| ||||||||||| ||||    
T  170 tatgttcgtatggactgagtagagacatcgctatgtttgtttgcttgtgattagaaacattt 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 3870 - 3909
Alignment:
Q  167 gctgctttgctttgctcgtgattagaaatatttcttctac 206  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  3870 gctgctttgctttgctcgtgatcagaaatatttcttctac 3909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 87829 - 87885
Alignment:
Q  131 gagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 188  Q
    |||||||| ||||||| |||||| ||||||||||||||| |||| ||||||| |||||    
T  87829 gagaagttatgttcgt-tggactaagtagaggcatcgctactttactttgcttgtgat 87885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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