View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_high_12 (Length: 309)
Name: NF9370_high_12
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 37147874 - 37147584
Alignment:
| Q |
1 |
atgtaaccaaaaaagtaatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctattgatttctctt |
100 |
Q |
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||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37147874 |
atgtaactataaaaataatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctattaatttctctt |
37147775 |
T |
|
| Q |
101 |
aattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147774 |
aattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatac |
37147675 |
T |
|
| Q |
201 |
cttttgctacacaaaatcatattcaaaacaaaaggattatctttaaataaatacctctcagatnnnnnnnttgcagaaagtcagaaacatt |
291 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37147674 |
ctttagctacacaaaatcatattcaaaacaaaaggattatctctaaataaatacctctcagataaaaaaattgcagaaagtcagaaacatt |
37147584 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 7894431 - 7894562
Alignment:
| Q |
63 |
ttttcgtaatggattgataatcgctattgatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaa |
162 |
Q |
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|||||||| | || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
7894431 |
ttttcgtattcgactgataatcgctattgatttcccttaattaagagttcaactttgatttaattaattaattcacaatttcgttttcaatttcatccaa |
7894530 |
T |
|
| Q |
163 |
caaacatcccttgtaatttatcctcttcaatt |
194 |
Q |
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| T |
7894531 |
caaacatttattgtaatttatcctcttcaatt |
7894562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 35718141 - 35718220
Alignment:
| Q |
122 |
ttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacc |
201 |
Q |
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|||||||||||||| ||||| | ||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
35718141 |
ttaattaattaatttacaatgtcgttttcaactttgtccaacaaacattctttgtaatttgtcctcttcaatttcatacc |
35718220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 35411163 - 35411082
Alignment:
| Q |
120 |
atttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacc |
201 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||||||||||| | ||| ||||||||||||| ||||| ||||| |
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| T |
35411163 |
atttaattaattaattcacaatttcgttttgaatttcgtccaacaaacattcattgaaatttatcctctttaattttatacc |
35411082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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