View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_high_4 (Length: 449)
Name: NF9370_high_4
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 26966152 - 26965716
Alignment:
| Q |
1 |
ccactgctactaggcctactcgcgaggaaattcgagtagacaagtctatacctatgccgacggctgcacatatacagactccatctcctcatacatatgc |
100 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26966152 |
ccactactactaggcctactcgccaggaaattcgagtagacaagtctatacctatgccgacggctgcacatatacagactccatctcctcatacatatgc |
26966053 |
T |
|
| Q |
101 |
tccgcctccacctacgcatacttcatcacctgtgtatccacaacatgcctatgcaccaccagaacatacaccatcgggatacacactaccacctatttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26966052 |
tccgcctccacctacgcatacttcatcacctgtgtatccacaacatgcctatgcaccaccaaaacatacaccatcgggatacacactaccacctatttat |
26965953 |
T |
|
| Q |
201 |
ctaccaccaatatatccacatcatgcatatgctccatcggcgaatacaccacctacaaatccgttgtcgggtggacctttacacaagcggccacccagtg |
300 |
Q |
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| T |
26965952 |
ccaccaccaatatatccacatcatgcatatgctccatcggcgaatacaccacctacaaatccgttgtcgggtggaccttcacacatacggccacccagtg |
26965853 |
T |
|
| Q |
301 |
gtaaggggaagagtgtcggatccactaccgctagtcattctcgcaaggtaactcctgtagtttctagttctccagaccaatttatacctgtgccgacgac |
400 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26965852 |
gtaaggggaagggtgtcggatccactaccactagtcattctctcaaggtaacttgtgtagtttctagttctccagaccaatgtatacctgtgccgacgac |
26965753 |
T |
|
| Q |
401 |
tgcacatacacagattccatctcctcatacctatgct |
437 |
Q |
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| T |
26965752 |
tgcacatacacagattccatcttctcatacatatgct |
26965716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 47 - 435
Target Start/End: Complemental strand, 26965770 - 26965397
Alignment:
| Q |
47 |
tatacctatgccgacggctgcacatatacagactccatctcctcatacatatgctccgcctccacctacgcatacttcatcacctgtgtatccacaacat |
146 |
Q |
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||||||| |||||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| || |
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| T |
26965770 |
tatacctgtgccgacgactgcacatacacagattccatcttctcatacatatgctccgcctccacctacccatacttcatcagctgtgtatcaacaaaat |
26965671 |
T |
|
| Q |
147 |
gcctatgcaccaccagaacatacaccatcgggatacacactaccacctatttatctaccaccaatatatccacatcatgcatatgctccatcggcgaata |
246 |
Q |
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|| ||||||||||| ||| |||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||||| |||| |
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| T |
26965670 |
gcatatgcaccaccgaaacttacaccatcgggatacacgctaccacctac---------------atattcacatcatgcatacgctccatcggtgaatc |
26965586 |
T |
|
| Q |
247 |
caccacctacaaatccgttgtcgggtggacctttacacaagcggccacccagtggtaaggggaagagtgtcggatccactaccgctagtcattctcgcaa |
346 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26965585 |
caccacctacaaatccattgtcgggtggacctttacacaagcggccacccagtggtaaggggaagagtgtcggatccactaccgctagtcattctcacaa |
26965486 |
T |
|
| Q |
347 |
ggtaactcctgtagtttctagttctccagaccaatttatacctgtgccgacgactgcacatacacagattccatctcctcatacctatg |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
26965485 |
ggtaactcctgtagtttctagttctccagaccaatttatacctgtgccgatgactgcgcatacacagattccatctcctcatacctatg |
26965397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 434
Target Start/End: Complemental strand, 26965200 - 26965101
Alignment:
| Q |
338 |
ttctcgcaaggtaactcctgtagtttctagttctcc---agaccaatttatacctgtgccgacgactgcacatacacagattccatctcctcatacctat |
434 |
Q |
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||||||||||||||||| ||||||||| ||||||| |||||| ||||||||| |||||| |||||||||||||| || ||||||| ||||||||||| |
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| T |
26965200 |
ttctcgcaaggtaactcgagtagtttctggttctcctttagaccagtttatacctatgccgatgactgcacatacacggactccatcttctcatacctat |
26965101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 26965162 - 26965084
Alignment:
| Q |
37 |
tagacaagtctatacctatgccgacggctgcacatatacagactccatctcctcatacatatgctccgcctccacctac |
115 |
Q |
| |
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||||| ||| |||||||||||||| | ||||||||| || |||||||||| ||||||| ||| ||| |||||||||||| |
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| T |
26965162 |
tagaccagtttatacctatgccgatgactgcacatacacggactccatcttctcatacctatactctgcctccacctac |
26965084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 26965449 - 26965381
Alignment:
| Q |
47 |
tatacctatgccgacggctgcacatatacagactccatctcctcatacatatgctccgcctccacctac |
115 |
Q |
| |
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||||||| |||||| | |||| |||| ||||| ||||||||||||||| |||| ||| ||||||||||| |
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| T |
26965449 |
tatacctgtgccgatgactgcgcatacacagattccatctcctcatacctatgttccacctccacctac |
26965381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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