View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9370_low_12 (Length: 415)
Name: NF9370_low_12
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 8558242 - 8558639
Alignment:
| Q |
1 |
tcctgatgtgaagatatttcgtgagattgttgtccctgggtttgatcgctctgattttcacgtcaatcaggtaagaaattaagtgaagaaaaatactcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8558242 |
tcctgatgtgaagatatttcgtgagattgttgtccctgggtttgatcgctctgattttcacgtcaatcaggtaagaaattaagtgaagaaaaatactcaa |
8558341 |
T |
|
| Q |
101 |
tcatgtgcatatgttattgtatttccaattttgtattataaattaggtcctgtgaaatatcattactcttgagtcttttaatgagtgtggccattgccgt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8558342 |
tcatgtgcatatgttactgtatttccaattttgtattataaattaggtcctgtgaaatatcattactcttgagtcttttaatgagtgtggccattgccgt |
8558441 |
T |
|
| Q |
201 |
cttttggaatctgtttgtttatttttgtttcatttgcttgtgttcgattgtttgacataaagctacacatttcaggtttttgcgcctagtaaagatggaa |
300 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8558442 |
cttttggaatctatttgtttattgttgtttcatttgcttgtgttcgattgtttgacataaagctacacatttcaggtttttgcgcctagtaaagatggaa |
8558541 |
T |
|
| Q |
301 |
ccaagataccgatgttcattgtttccagaaaggatataattttgaatggttcacacccttgtttgttatatggatatggtggttttaacgtcagtctt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8558542 |
ccaagataccgatgttcattgtttccagaaaggatataattttgaatggttcacacccttgtttgttatatggatatggtggttttaacgtcagtctt |
8558639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 267 - 398
Target Start/End: Original strand, 8554033 - 8554164
Alignment:
| Q |
267 |
acatttcaggtttttgcgcctagtaaagatggaaccaagataccgatgttcattgtttccagaaaggatataattttgaatggttcacacccttgtttgt |
366 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| | |
|
|
| T |
8554033 |
acatttcaggtttttgctcctagtaaagatggaaccaagatcccaatgttcattgttgcgagaaaggatattattttggatggttcacacccttgtttat |
8554132 |
T |
|
| Q |
367 |
tatatggatatggtggttttaacgtcagtctt |
398 |
Q |
| |
|
||||||||||||| |||| |||| | |||||| |
|
|
| T |
8554133 |
tatatggatatggcggttataacattagtctt |
8554164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8553803 - 8553876
Alignment:
| Q |
1 |
tcctgatgtgaagatatttcgtgagattgttgtccctgggtttgatcgctctgattttcacgtcaatcaggtaa |
74 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
8553803 |
tcctgatatgaagatatttcgtgagattgttgttcccgggtttgatcgctctgagtttcatgtcaatcaggtaa |
8553876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 395
Target Start/End: Original strand, 53738431 - 53738560
Alignment:
| Q |
266 |
cacatttcaggtttttgcgcctagtaaagatggaaccaagataccgatgttcattgtttccagaaaggatataattttgaatggttcacacccttgtttg |
365 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| || |||||||||||| | | ||||||||| |||| ||||||||||||| ||| || |
|
|
| T |
53738431 |
cacatttcaggtttttttccctagtaaagatggcaccaagatcccaatgttcattgttgcaaaaaaggatattgttttcgatggttcacacccgtgtctg |
53738530 |
T |
|
| Q |
366 |
ttatatggatatggtggttttaacgtcagt |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
53738531 |
ttatatggatatggtggttttaacatcagt |
53738560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 53738156 - 53738228
Alignment:
| Q |
1 |
tcctgatgtgaagatatttcgtgagattgttgtccctgggtttgatcgctctgattttcacgtcaatcaggta |
73 |
Q |
| |
|
||||||| |||||||||| ||||| |||| |||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
53738156 |
tcctgatctgaagatattacgtgaaattgcagtccctgggtttgatcgctccgagtttcaagtcaatcaggta |
53738228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University