View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9370_low_13 (Length: 413)
Name: NF9370_low_13
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 11696297 - 11696685
Alignment:
| Q |
18 |
agaagctttgttgctttatgttgatatgattgaaagaggtgttgagcctgataaattcacttatccttttgttttaaaggcttgttctttattaggcgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696297 |
agaagctttgttgctttatgttgatatgattgaaagaggtgttgagcctgataaattcacttatccttttgttttaaaggcttgttctttattaggcgtg |
11696396 |
T |
|
| Q |
118 |
gtcgatgaaggaattcaagttcatggtcatgtttttaagatgggtcttgaaggtgatgtcattgtgcaaaatagtttgatcaacatgtatggtaagtgtg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696397 |
gtcgatgaaggaattcaagttcatggtcatgtttttaagatgggtcttgaaggtgatgtcattgtgcaaaatagtttgatcaacatgtatggtaagtgtg |
11696496 |
T |
|
| Q |
218 |
gggagataaagaatgcttgtgatgtgtttaatggaatggatgaaaagagtgttgcttcatggagtgctattattggtgctcatgcttgtgtggaaatgtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696497 |
gggagataaagaatgcttgtgatgtgtttaatggaatggatgaaaagagtgttgcttcatggagtgctattattggtgctcatgcttgtgtggaaatgtg |
11696596 |
T |
|
| Q |
318 |
gaatgaatgtgtaatgcttcttgggaaaatgagtagtgaaggaaggtgtagggttgaagaaagcacacttgttaatgtgctctctgctt |
406 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696597 |
gaatgaatgtctaatgcttcttgggaaaatgagtagtgaaggaaggtgtagggttgaagaaagcacacttgttaatgtgctctctgctt |
11696685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University