View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_low_16 (Length: 406)
Name: NF9370_low_16
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_16 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 33382989 - 33383377
Alignment:
| Q |
1 |
gaagattggctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33382989 |
gaagattggctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaa |
33383088 |
T |
|
| Q |
101 |
ttggagcatttgtgactcattgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctgaacaatttta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383089 |
ttggagcatttgtgactcattgtggatggaattcagttttagaaggtgtggttgctggggtacctatcgttacttggcctgttgctgctgaacaatttta |
33383188 |
T |
|
| Q |
201 |
caatgagaagttggtgaatgaggtacttaaaattggtgtacctgttggagttaaaaaatgggttggattggagggagat-agtgttcaatgggatgcact |
299 |
Q |
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| T |
33383189 |
caatgagaagttggtgaatgaggtacttaaaattggtgtacctgttggagttaaaaaatgggttggattggagggagataagtgttcaatgggatgcact |
33383288 |
T |
|
| Q |
300 |
ggaaaaagctgtgaagaggattatggaagatgaagaagtagaggaaatgaggaaaagagtgaaattgttgtcaaagttagctaagaggt |
388 |
Q |
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| T |
33383289 |
ggaaaaagctgtgaagaggattatggaagatgaagaagtagaggaaatgaggaaaagagtgaaattgttgtcaaagttagctaagaggt |
33383377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 353
Target Start/End: Complemental strand, 33391045 - 33390713
Alignment:
| Q |
21 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaattggagcatttgtgactcat |
120 |
Q |
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| T |
33391045 |
atttgagaaaagaatgaaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcat |
33390946 |
T |
|
| Q |
121 |
tgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctgaacaattttacaatgagaagttggtgaatg |
220 |
Q |
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||||||||||| | | ||| ||| |||||| |||||| |||||||| ||||||||||| | ||| |||| |||||||| |||||||||||||| | || |
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| T |
33390945 |
tgtggatggaacttaactttggaaagtgtagctgctggagtacctatgattacttggcctatagctcctgagcaattttataatgagaagttggtaactg |
33390846 |
T |
|
| Q |
221 |
aggtacttaaaattggtgtacctgttggagttaaaaaatgggttggattggagggagatagtgttcaatgggatgcactggaaaaagctgtgaagaggat |
320 |
Q |
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| |||||||||||||||||||||||||||| ||||| ||||| |||| || | | |||| ||||| ||||||||| |||| || |||||||||| | | |
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| T |
33390845 |
atgtacttaaaattggtgtacctgttggagctaaaacatgggatggaaaggtgagtgataaagttcattgggatgcagtggagaaggctgtgaagaaggt |
33390746 |
T |
|
| Q |
321 |
tatggaagatgaagaagtagaggaaatgaggaa |
353 |
Q |
| |
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|||||||| ||||||| | ||||||||||||| |
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| T |
33390745 |
tatggaaggagaagaagcaaaggaaatgaggaa |
33390713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 33401823 - 33401723
Alignment:
| Q |
113 |
tgactcattgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctgaacaattttacaatgagaagtt |
212 |
Q |
| |
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||||||||||||||||||| ||| |||||||||||| |||||| |||||||| | |||||||| || | ||||| |||||| |||||||||||| |
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| T |
33401823 |
tgactcattgtggatggaactcaactttagaaggtgtgtgtgctggagtacctatggcgacttggccactttcagctgagcaatttatcaatgagaagtt |
33401724 |
T |
|
| Q |
213 |
g |
213 |
Q |
| |
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| |
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| T |
33401723 |
g |
33401723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 27688826 - 27688480
Alignment:
| Q |
7 |
tggctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaattggag |
106 |
Q |
| |
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|||||||| |||||||| ||| |||||| ||||||||| ||||||||||||||||||||||| || ||| | ||||||||||||| |||||||| || | |
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| T |
27688826 |
tggctacctgaaggattcgaggaaagaacggaaggaaaaggactaattataagaggttggtctccacaagtgatgattcttgaacatgaagcaatcgggg |
27688727 |
T |
|
| Q |
107 |
catttgtgactcattgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctgaacaattttacaatga |
206 |
Q |
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|||||||||| ||||| ||||||||||| ||||||||||| || || ||||| |||||||| ||||||||||||| || || || |||||||||||||| |
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| T |
27688726 |
catttgtgacgcattgcggatggaattcggttttagaaggagtggtagctggagtacctatgattacttggcctgtggcggccgagcaattttacaatga |
27688627 |
T |
|
| Q |
207 |
gaagttggtgaatgaggtacttaaaattggtgtacctgttggagttaaaaaatgggttggattggagggagatagtgttcaatgggatgcactggaaaaa |
306 |
Q |
| |
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||||||||| | |||||||||||||| |||||||||||||||||||||||| |||||| || || |||| |||| ||||||||||| |||| || |
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| T |
27688626 |
gaagttggtcactgaggtacttaaaactggtgtacctgttggagttaaaaagtgggttatgaaggttggggataatgttgaatgggatgcagtggagaag |
27688527 |
T |
|
| Q |
307 |
gctgtgaagaggattatggaagatgaagaagtagaggaaatgaggaa |
353 |
Q |
| |
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|||||||||||| ||||||||| ||||||| | | ||||||||||| |
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| T |
27688526 |
gctgtgaagagggttatggaaggggaagaagcatatgaaatgaggaa |
27688480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 18989456 - 18989693
Alignment:
| Q |
21 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaattggagcatttgtgactcat |
120 |
Q |
| |
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||||||||||| |||| ||||||| ||||||||||||||||||||| | | ||| |||||| || |||| |||| ||||||||||||||||||||| |
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| T |
18989456 |
atttgagaaaataatgaaaggaaaaggactaattataagaggttggcctcttcaacttttgatttttcaacataaagctattggagcatttgtgactcat |
18989555 |
T |
|
| Q |
121 |
tgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctgaacaattttacaatgagaagttggtgaatg |
220 |
Q |
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|
| T |
18989556 |
tgtggatggaacttaactttggaaagtgtggctgctggagtacctatgattacttggcctatagcttttgaggaattttataatgagaagttggtaactg |
18989655 |
T |
|
| Q |
221 |
aggtacttaaaattggtgtacctgttggagttaaaaaa |
258 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||| |
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| T |
18989656 |
aagtacttaaaattggtgtacctgttggagataaaaaa |
18989693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 19001890 - 19001937
Alignment:
| Q |
21 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtc |
68 |
Q |
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|||||||||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
19001890 |
atttgagaaaaggatgaaaggaaacggactaattataagaggttggtc |
19001937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 11686 - 11646
Alignment:
| Q |
98 |
caattggagcatttgtgactcattgtggatggaattcagtt |
138 |
Q |
| |
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||||||| |||||| ||||||||||||| |||||||||||| |
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|
| T |
11686 |
caattggtgcatttttgactcattgtggttggaattcagtt |
11646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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