View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_low_19 (Length: 343)
Name: NF9370_low_19
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 10922529 - 10922216
Alignment:
| Q |
20 |
gagtctaattgctagaggagttatacatttatcgaacatgaagtcgtgaattttgatgcaatgcactatggtcattaaataaaccagtcacacgacgcta |
119 |
Q |
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| T |
10922529 |
gagtctaattgctagaggagttatacatttatctaacatgaagtcgtgaattttgatgcaatgcactatggtcattaaataaaccagtcacacgacgcta |
10922430 |
T |
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| Q |
120 |
gacagcttgtaaattaattgtttattcttggtgaatttggtgatgcctaatatctaagacaatactttaaagttgttaagctgttaatcatattgctgca |
219 |
Q |
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| T |
10922429 |
gacagcttgtaaattaattgtttattcttggtgaatttggtgatgcctaatatctaagacaatactttaaagttgttaagccgttaatcatattgctgca |
10922330 |
T |
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| Q |
220 |
actgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaaatcgactatagttgttaaac |
319 |
Q |
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| T |
10922329 |
actgattttgtatatatactcgtaccttgtgaatgataagcgttggtgatggtaaattatacaggtagtatacatagaaaatcgactatagttgttaaac |
10922230 |
T |
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| Q |
320 |
caattgaatctgtg |
333 |
Q |
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| T |
10922229 |
caattgaatctgtg |
10922216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 45407408 - 45407119
Alignment:
| Q |
15 |
cacttgagtctaattgctagaggagttatacatttatcgaacatgaagtcgtgaattttgatgcaatgcactatggtcat---taaataaaccagtcaca |
111 |
Q |
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| T |
45407408 |
cacttaagtttaattgttagagaagtcatacatttatcaaacacgaagtcataaattttgatgcattgcactatggtcatgattaaataaaccagtcaca |
45407309 |
T |
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| Q |
112 |
cga-------cgctagacagcttgtaaattaattgtttattcttggtgaatttggtgatgcctaatatctaagacaatactttaaagttgttaagctgtt |
204 |
Q |
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||| |||||||||||||||| ||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||| || |
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| T |
45407308 |
cgagtcacgacgctagacagcttgta--ttaattgtttattattggtgtatttggtgatggctgatatctaagacaatactttaaagttgttaagctatt |
45407211 |
T |
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| Q |
205 |
aatcatattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaa |
299 |
Q |
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| T |
45407210 |
aatcatattgctgcaactgattttgta--tataatcgtaccttgtgaatgataggtgct-atactggtacattatacatgtagtatacatagaaa |
45407119 |
T |
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